FF:11661-122F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004940 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004940 | ||
|accession_numbers=CAGE;DRX008114;DRR008986;DRZ000411;DRZ001796;DRZ011761;DRZ013146 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037084;DRR041450;DRZ007092 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002037,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002603 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000195 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11661-122F5 | |id=FF:11661-122F5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000195 | ||
|is_obsolete= | |||
|library_id=CNhs12117 | |||
|library_id_phase_based=2:CNhs12117 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11661 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTGAAA.11661 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11661 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTGAAA.11661 | |||
|name=Astrocyte - cerebellum, donor3 | |name=Astrocyte - cerebellum, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12117,LSID839,release011,COMPLETED | |profile_hcage=CNhs12117,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.344041770719677,0,0.339065823559826,0.468646196339541,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391691727760566,0,0,0,0,0,0.254961117478783,0,0,0.326545713681524,0,0,0,0,0,0,0,0,0,0,0,0,0.338773767784077,0.211363379907382,0,0,0,0,0,0,0,0.034992531893908,0,0,0,0.409472156107243,0,0.118349181246503,0.118415106013485,0.255926652504235,0,0,0.0210714788003877,0,0,0,0,0,0,0,0,0.211363379907382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118415106013485,0.1246150001342,0,0,0,0.187365617120921,0.290752203158795,0,0.287883245271605,0,0,-0.0980353512377064,0.319918720538634,0,0,0,0,0,0,0.118415106013485,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.206808515332453,0.300017952744542,0,0,0.118415106013485,0,0,0 | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC1815 | |rna_catalog_number=SC1815 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122F5 | |rna_tube_id=122F5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.GTGAAA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.84437160347891e-208!GO:0005737;cytoplasm;6.93093734695666e-168!GO:0043226;organelle;2.88595181101819e-164!GO:0043229;intracellular organelle;4.24103060215622e-164!GO:0043231;intracellular membrane-bound organelle;5.6849136171365e-163!GO:0043227;membrane-bound organelle;1.37489880850108e-162!GO:0044444;cytoplasmic part;3.81951793204593e-116!GO:0044422;organelle part;1.85748627790305e-112!GO:0044446;intracellular organelle part;2.27958652632596e-111!GO:0032991;macromolecular complex;3.44431231701651e-77!GO:0005515;protein binding;3.59523058257783e-73!GO:0030529;ribonucleoprotein complex;7.47897757658248e-67!GO:0044237;cellular metabolic process;1.20743073563585e-65!GO:0044238;primary metabolic process;1.24014722071471e-65!GO:0043170;macromolecule metabolic process;6.11379144122103e-61!GO:0005739;mitochondrion;7.72724784196664e-61!GO:0005634;nucleus;1.81064086809776e-58!GO:0043233;organelle lumen;2.97157426790654e-54!GO:0031974;membrane-enclosed lumen;2.97157426790654e-54!GO:0016043;cellular component organization and biogenesis;2.20325205658916e-47!GO:0005840;ribosome;1.13819143462417e-46!GO:0044428;nuclear part;3.91563994026925e-46!GO:0031090;organelle membrane;7.44865448415536e-46!GO:0003723;RNA binding;1.58885806120547e-45!GO:0003735;structural constituent of ribosome;4.75261085357302e-42!GO:0044429;mitochondrial part;9.61558821817363e-42!GO:0043234;protein complex;2.12046019603883e-39!GO:0033279;ribosomal subunit;2.91673689948652e-36!GO:0006412;translation;3.57132517911403e-36!GO:0019538;protein metabolic process;3.15426086516011e-35!GO:0009058;biosynthetic process;4.76621489728511e-35!GO:0043283;biopolymer metabolic process;2.5807687003709e-34!GO:0031967;organelle envelope;3.10611756461907e-34!GO:0031975;envelope;5.73836580455579e-34!GO:0044249;cellular biosynthetic process;3.02773391791318e-32!GO:0015031;protein transport;9.04503594998848e-32!GO:0010467;gene expression;1.06566553329077e-31!GO:0033036;macromolecule localization;3.17087992227082e-31!GO:0044260;cellular macromolecule metabolic process;6.58797983956731e-31!GO:0009059;macromolecule biosynthetic process;7.37143055273182e-31!GO:0044267;cellular protein metabolic process;3.83284248505048e-30!GO:0006996;organelle organization and biogenesis;6.33811360015079e-30!GO:0031981;nuclear lumen;9.22469832126275e-30!GO:0006396;RNA processing;1.84952911374032e-29!GO:0008104;protein localization;2.96238960548662e-29!GO:0005829;cytosol;3.92870346050382e-29!GO:0045184;establishment of protein localization;9.94378979568807e-29!GO:0005740;mitochondrial envelope;1.1666601826151e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.42468000534993e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.85852289477241e-27!GO:0019866;organelle inner membrane;2.80393301491814e-27!GO:0046907;intracellular transport;3.94410454798166e-27!GO:0031966;mitochondrial membrane;4.80488330039391e-27!GO:0005743;mitochondrial inner membrane;8.47545002211503e-26!GO:0065003;macromolecular complex assembly;8.70618702391685e-25!GO:0016071;mRNA metabolic process;2.15881769233404e-24!GO:0043228;non-membrane-bound organelle;8.03933195652855e-24!GO:0043232;intracellular non-membrane-bound organelle;8.03933195652855e-24!GO:0022607;cellular component assembly;6.92799710974537e-23!GO:0008380;RNA splicing;2.57601191113182e-22!GO:0006886;intracellular protein transport;8.99468238582671e-22!GO:0044445;cytosolic part;6.83415194278066e-21!GO:0006397;mRNA processing;7.08760207090146e-20!GO:0015934;large ribosomal subunit;7.53854525247102e-20!GO:0006119;oxidative phosphorylation;3.87394302316639e-19!GO:0006259;DNA metabolic process;5.19151904957671e-19!GO:0005654;nucleoplasm;1.25313947702622e-18!GO:0044455;mitochondrial membrane part;5.01009058742289e-18!GO:0008134;transcription factor binding;5.78730962128879e-18!GO:0015935;small ribosomal subunit;1.72956711740947e-17!GO:0051649;establishment of cellular localization;1.76155834480984e-16!GO:0044451;nucleoplasm part;1.98225866272273e-16!GO:0051641;cellular localization;2.49259705698999e-16!GO:0012505;endomembrane system;2.83930152865595e-16!GO:0031980;mitochondrial lumen;3.10935828570629e-16!GO:0005759;mitochondrial matrix;3.10935828570629e-16!GO:0005681;spliceosome;4.06438761607736e-16!GO:0005783;endoplasmic reticulum;4.61148467697735e-16!GO:0048770;pigment granule;1.31228157200574e-15!GO:0042470;melanosome;1.31228157200574e-15!GO:0005746;mitochondrial respiratory chain;1.77699465886527e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.58953310141096e-15!GO:0003676;nucleic acid binding;4.29426168028762e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.03899510795972e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.36971914238035e-15!GO:0003954;NADH dehydrogenase activity;8.36971914238035e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.36971914238035e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.63121727665145e-15!GO:0005794;Golgi apparatus;1.45805297715523e-14!GO:0051186;cofactor metabolic process;2.52616618576108e-14!GO:0006457;protein folding;4.41736699039557e-14!GO:0007049;cell cycle;5.38704732114255e-14!GO:0016070;RNA metabolic process;8.90979890406272e-14!GO:0044432;endoplasmic reticulum part;1.05423998093076e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.97801942026363e-13!GO:0016874;ligase activity;2.59460743202119e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.30633429295508e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.35350540750575e-13!GO:0042773;ATP synthesis coupled electron transport;8.35350540750575e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.04098084274157e-12!GO:0045271;respiratory chain complex I;1.04098084274157e-12!GO:0005747;mitochondrial respiratory chain complex I;1.04098084274157e-12!GO:0006323;DNA packaging;1.64084307311681e-12!GO:0000166;nucleotide binding;2.57355958405817e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.62232902091063e-12!GO:0005761;mitochondrial ribosome;6.23547322478334e-12!GO:0000313;organellar ribosome;6.23547322478334e-12!GO:0051276;chromosome organization and biogenesis;7.11409893058677e-12!GO:0003712;transcription cofactor activity;7.16687131327213e-12!GO:0006605;protein targeting;8.63061180467532e-12!GO:0006512;ubiquitin cycle;1.24245055552518e-11!GO:0016462;pyrophosphatase activity;3.34881920263726e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.02837734842917e-11!GO:0005730;nucleolus;4.58911212435652e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.25121432169324e-11!GO:0006732;coenzyme metabolic process;5.52071348007185e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;5.61039235599188e-11!GO:0022402;cell cycle process;8.27819983075567e-11!GO:0017111;nucleoside-triphosphatase activity;9.95620432548646e-11!GO:0044265;cellular macromolecule catabolic process;1.08666132012798e-10!GO:0043412;biopolymer modification;1.18132359894899e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.65836002420214e-10!GO:0016192;vesicle-mediated transport;4.95858647859517e-10!GO:0051082;unfolded protein binding;5.13087169270222e-10!GO:0006366;transcription from RNA polymerase II promoter;7.00672647435663e-10!GO:0048523;negative regulation of cellular process;1.05143689658874e-09!GO:0006464;protein modification process;1.19706136321e-09!GO:0006333;chromatin assembly or disassembly;1.24255609506184e-09!GO:0065004;protein-DNA complex assembly;1.99829597812286e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.25689481988218e-09!GO:0048193;Golgi vesicle transport;2.58580826209853e-09!GO:0019941;modification-dependent protein catabolic process;2.61027913047425e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.61027913047425e-09!GO:0043285;biopolymer catabolic process;2.65711733278226e-09!GO:0005789;endoplasmic reticulum membrane;2.77903598571003e-09!GO:0012501;programmed cell death;3.27574131427002e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.6667619698117e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.75213259464867e-09!GO:0044257;cellular protein catabolic process;3.97408073681101e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.4892276328124e-09!GO:0000375;RNA splicing, via transesterification reactions;4.4892276328124e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.4892276328124e-09!GO:0022618;protein-RNA complex assembly;4.98380655467416e-09!GO:0044248;cellular catabolic process;5.55879628832742e-09!GO:0050794;regulation of cellular process;5.55879628832742e-09!GO:0009057;macromolecule catabolic process;5.63151876167595e-09!GO:0006915;apoptosis;5.64621823792222e-09!GO:0000278;mitotic cell cycle;7.41848419314088e-09!GO:0006334;nucleosome assembly;7.7067993762151e-09!GO:0031497;chromatin assembly;8.0778819993238e-09!GO:0032553;ribonucleotide binding;1.67728327983742e-08!GO:0032555;purine ribonucleotide binding;1.67728327983742e-08!GO:0008135;translation factor activity, nucleic acid binding;1.75508259350927e-08!GO:0051726;regulation of cell cycle;2.28009026431419e-08!GO:0005793;ER-Golgi intermediate compartment;2.4194871135219e-08!GO:0006913;nucleocytoplasmic transport;2.66280980839971e-08!GO:0000074;regulation of progression through cell cycle;2.68715432872517e-08!GO:0008219;cell death;3.31438446514455e-08!GO:0016265;death;3.31438446514455e-08!GO:0048519;negative regulation of biological process;3.36509849918572e-08!GO:0000785;chromatin;4.68131096203116e-08!GO:0030163;protein catabolic process;4.70904989443863e-08!GO:0051169;nuclear transport;6.03721973148845e-08!GO:0017038;protein import;6.88840031742531e-08!GO:0017076;purine nucleotide binding;7.00164251657491e-08!GO:0016564;transcription repressor activity;8.11730449843276e-08!GO:0051188;cofactor biosynthetic process;1.0179966661847e-07!GO:0009055;electron carrier activity;1.12687318484783e-07!GO:0043687;post-translational protein modification;1.13654897144425e-07!GO:0006461;protein complex assembly;1.22568479311571e-07!GO:0003714;transcription corepressor activity;1.28289282653343e-07!GO:0044427;chromosomal part;1.36404821607907e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.55443081668703e-07!GO:0050789;regulation of biological process;1.78298818876507e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.90556788467254e-07!GO:0005694;chromosome;2.47298261235643e-07!GO:0044431;Golgi apparatus part;2.8452457463618e-07!GO:0005635;nuclear envelope;2.9551527128783e-07!GO:0006163;purine nucleotide metabolic process;5.33805722968892e-07!GO:0031252;leading edge;5.47522591207397e-07!GO:0031965;nuclear membrane;6.46607265136172e-07!GO:0009150;purine ribonucleotide metabolic process;6.46607265136172e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.2628060751228e-07!GO:0008565;protein transporter activity;9.50305860658928e-07!GO:0007005;mitochondrion organization and biogenesis;1.00785867195878e-06!GO:0031324;negative regulation of cellular metabolic process;1.07834792954584e-06!GO:0016568;chromatin modification;1.07834792954584e-06!GO:0009259;ribonucleotide metabolic process;1.09210807917843e-06!GO:0008639;small protein conjugating enzyme activity;1.1309202805937e-06!GO:0006399;tRNA metabolic process;1.15925510652004e-06!GO:0005524;ATP binding;1.34072367832487e-06!GO:0003924;GTPase activity;1.34218741796021e-06!GO:0048475;coated membrane;1.42203941348577e-06!GO:0030117;membrane coat;1.42203941348577e-06!GO:0016604;nuclear body;1.42509255512117e-06!GO:0032559;adenyl ribonucleotide binding;1.59902312784321e-06!GO:0005788;endoplasmic reticulum lumen;1.60417019725253e-06!GO:0016049;cell growth;1.62914602863464e-06!GO:0008361;regulation of cell size;1.75072127667005e-06!GO:0004842;ubiquitin-protein ligase activity;1.79310107893396e-06!GO:0045786;negative regulation of progression through cell cycle;1.89644447064707e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.89644447064707e-06!GO:0005667;transcription factor complex;2.0076544664154e-06!GO:0009141;nucleoside triphosphate metabolic process;2.14512093976324e-06!GO:0006164;purine nucleotide biosynthetic process;2.41102636289285e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.51196994481405e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.54761190996052e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.54761190996052e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.54761190996052e-06!GO:0042254;ribosome biogenesis and assembly;2.70961187495349e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.88513996467297e-06!GO:0016481;negative regulation of transcription;2.98294972833106e-06!GO:0006974;response to DNA damage stimulus;3.55180377851276e-06!GO:0015986;ATP synthesis coupled proton transport;3.57630928897318e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.57630928897318e-06!GO:0030120;vesicle coat;3.5835145419684e-06!GO:0030662;coated vesicle membrane;3.5835145419684e-06!GO:0019787;small conjugating protein ligase activity;3.60340018009009e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.69133644410983e-06!GO:0003743;translation initiation factor activity;5.57379299569262e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.57379299569262e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.57379299569262e-06!GO:0009260;ribonucleotide biosynthetic process;6.53502104218848e-06!GO:0065002;intracellular protein transport across a membrane;6.86280627474644e-06!GO:0016740;transferase activity;7.26691407440216e-06!GO:0030554;adenyl nucleotide binding;7.26691407440216e-06!GO:0009060;aerobic respiration;7.44601448323293e-06!GO:0005773;vacuole;7.44601448323293e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.629258365062e-06!GO:0045259;proton-transporting ATP synthase complex;7.74951346965094e-06!GO:0005905;coated pit;7.93715042438408e-06!GO:0005768;endosome;8.17243746262206e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.80401901423941e-06!GO:0043038;amino acid activation;9.03315562420864e-06!GO:0006418;tRNA aminoacylation for protein translation;9.03315562420864e-06!GO:0043039;tRNA aminoacylation;9.03315562420864e-06!GO:0009142;nucleoside triphosphate biosynthetic process;9.28000306746957e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.28000306746957e-06!GO:0044453;nuclear membrane part;1.01265876047867e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.1432492573642e-05!GO:0022403;cell cycle phase;1.15581884417064e-05!GO:0016881;acid-amino acid ligase activity;1.20646568683205e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.34300474803508e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39871327830742e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39871327830742e-05!GO:0000139;Golgi membrane;1.5031433131384e-05!GO:0006446;regulation of translational initiation;1.57671093680634e-05!GO:0042981;regulation of apoptosis;1.58405701094021e-05!GO:0046034;ATP metabolic process;1.58405701094021e-05!GO:0019829;cation-transporting ATPase activity;1.66127391940594e-05!GO:0009108;coenzyme biosynthetic process;1.66382153806679e-05!GO:0009892;negative regulation of metabolic process;1.68205928361594e-05!GO:0031988;membrane-bound vesicle;1.70634481569469e-05!GO:0043067;regulation of programmed cell death;1.75449512491034e-05!GO:0045333;cellular respiration;2.14799426314096e-05!GO:0006260;DNA replication;2.15040034641568e-05!GO:0016563;transcription activator activity;2.24816262998169e-05!GO:0016607;nuclear speck;2.43401178177376e-05!GO:0003713;transcription coactivator activity;2.4726744583069e-05!GO:0007067;mitosis;2.48809559778411e-05!GO:0000087;M phase of mitotic cell cycle;2.58575881141159e-05!GO:0001558;regulation of cell growth;2.68522084479768e-05!GO:0006413;translational initiation;3.46946101551495e-05!GO:0006754;ATP biosynthetic process;3.4907178845023e-05!GO:0006753;nucleoside phosphate metabolic process;3.4907178845023e-05!GO:0005762;mitochondrial large ribosomal subunit;3.54045626468317e-05!GO:0000315;organellar large ribosomal subunit;3.54045626468317e-05!GO:0015630;microtubule cytoskeleton;3.68738982542019e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.93163787937458e-05!GO:0006752;group transfer coenzyme metabolic process;4.60797077600808e-05!GO:0015078;hydrogen ion transmembrane transporter activity;4.74246445600806e-05!GO:0000902;cell morphogenesis;5.35989802659542e-05!GO:0032989;cellular structure morphogenesis;5.35989802659542e-05!GO:0043069;negative regulation of programmed cell death;5.37490536626443e-05!GO:0007010;cytoskeleton organization and biogenesis;5.37490536626443e-05!GO:0000323;lytic vacuole;5.65111292554258e-05!GO:0005764;lysosome;5.65111292554258e-05!GO:0003697;single-stranded DNA binding;5.67822200761194e-05!GO:0006606;protein import into nucleus;5.87637901807453e-05!GO:0044440;endosomal part;6.15069389169863e-05!GO:0010008;endosome membrane;6.15069389169863e-05!GO:0005770;late endosome;6.49296049317417e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.63162068601423e-05!GO:0008654;phospholipid biosynthetic process;6.71696266558459e-05!GO:0006281;DNA repair;6.86904616837228e-05!GO:0043066;negative regulation of apoptosis;6.86904616837228e-05!GO:0051301;cell division;6.8763941333596e-05!GO:0009056;catabolic process;6.96779526234238e-05!GO:0051170;nuclear import;7.60839389132114e-05!GO:0016853;isomerase activity;7.62232822506014e-05!GO:0009117;nucleotide metabolic process;7.84867099785252e-05!GO:0009719;response to endogenous stimulus;7.84867099785252e-05!GO:0000786;nucleosome;8.04945697433513e-05!GO:0004298;threonine endopeptidase activity;8.48357062368225e-05!GO:0006793;phosphorus metabolic process;9.14003167983555e-05!GO:0006796;phosphate metabolic process;9.14003167983555e-05!GO:0031410;cytoplasmic vesicle;9.34246348308787e-05!GO:0006916;anti-apoptosis;9.51974939781741e-05!GO:0031982;vesicle;0.000107108256792586!GO:0005643;nuclear pore;0.000121570533742349!GO:0051427;hormone receptor binding;0.000121570533742349!GO:0051329;interphase of mitotic cell cycle;0.000125588247953181!GO:0042623;ATPase activity, coupled;0.000131622500008312!GO:0016044;membrane organization and biogenesis;0.000135343287928046!GO:0048468;cell development;0.000149473096306088!GO:0044262;cellular carbohydrate metabolic process;0.000163927404288813!GO:0045892;negative regulation of transcription, DNA-dependent;0.000171231633903271!GO:0040008;regulation of growth;0.000181935351012361!GO:0016310;phosphorylation;0.000184559155590496!GO:0006099;tricarboxylic acid cycle;0.000190352344195272!GO:0046356;acetyl-CoA catabolic process;0.000190352344195272!GO:0051187;cofactor catabolic process;0.000209077361237255!GO:0030867;rough endoplasmic reticulum membrane;0.000212197852343071!GO:0006364;rRNA processing;0.000213619404639506!GO:0051325;interphase;0.00022378719977841!GO:0035257;nuclear hormone receptor binding;0.000225136046783513!GO:0009109;coenzyme catabolic process;0.000251057779233701!GO:0006084;acetyl-CoA metabolic process;0.000258022073421415!GO:0030036;actin cytoskeleton organization and biogenesis;0.000263148364817009!GO:0016491;oxidoreductase activity;0.000267860585706074!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00027727169006901!GO:0033116;ER-Golgi intermediate compartment membrane;0.00029111213575375!GO:0005525;GTP binding;0.000331614819180876!GO:0030133;transport vesicle;0.000373025267814862!GO:0008092;cytoskeletal protein binding;0.000374073703813464!GO:0000245;spliceosome assembly;0.000378526952710281!GO:0043623;cellular protein complex assembly;0.000415952905907916!GO:0016887;ATPase activity;0.000424785948550544!GO:0016859;cis-trans isomerase activity;0.000455528776020279!GO:0016072;rRNA metabolic process;0.000455575950282341!GO:0043566;structure-specific DNA binding;0.000477070931046754!GO:0032446;protein modification by small protein conjugation;0.000485788647468697!GO:0046474;glycerophospholipid biosynthetic process;0.000519525289203612!GO:0045454;cell redox homeostasis;0.000539815809024747!GO:0016567;protein ubiquitination;0.000539815809024747!GO:0005791;rough endoplasmic reticulum;0.000569211576330159!GO:0005798;Golgi-associated vesicle;0.000579675868545938!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000590303651733637!GO:0030118;clathrin coat;0.000606325518448595!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000647699985159543!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000710639671974536!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000783338433599069!GO:0019899;enzyme binding;0.000787697224540502!GO:0000314;organellar small ribosomal subunit;0.000787697224540502!GO:0005763;mitochondrial small ribosomal subunit;0.000787697224540502!GO:0030176;integral to endoplasmic reticulum membrane;0.000829373699723385!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00083934562143677!GO:0065007;biological regulation;0.00086600984854335!GO:0046930;pore complex;0.000890103663725499!GO:0008250;oligosaccharyl transferase complex;0.000958603743927877!GO:0019222;regulation of metabolic process;0.00109768101449927!GO:0007006;mitochondrial membrane organization and biogenesis;0.00112955387078337!GO:0007264;small GTPase mediated signal transduction;0.00113235433943119!GO:0030029;actin filament-based process;0.00116204744454508!GO:0003899;DNA-directed RNA polymerase activity;0.00116204744454508!GO:0031902;late endosome membrane;0.0012282949258557!GO:0030132;clathrin coat of coated pit;0.00127301633587541!GO:0050657;nucleic acid transport;0.00130094842320953!GO:0051236;establishment of RNA localization;0.00130094842320953!GO:0050658;RNA transport;0.00130094842320953!GO:0043681;protein import into mitochondrion;0.00130299213028196!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00132726472573485!GO:0051101;regulation of DNA binding;0.00133274645964481!GO:0006403;RNA localization;0.00135021842734575!GO:0008286;insulin receptor signaling pathway;0.00141033167642364!GO:0015980;energy derivation by oxidation of organic compounds;0.00141304211401493!GO:0051246;regulation of protein metabolic process;0.00145702395451672!GO:0051789;response to protein stimulus;0.00146915922874176!GO:0006986;response to unfolded protein;0.00146915922874176!GO:0030027;lamellipodium;0.00154201664725665!GO:0016779;nucleotidyltransferase activity;0.00154201664725665!GO:0040029;regulation of gene expression, epigenetic;0.00155621849358594!GO:0008610;lipid biosynthetic process;0.00161785296505785!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00174721732576347!GO:0048522;positive regulation of cellular process;0.00176486978434966!GO:0005774;vacuolar membrane;0.00181956322901725!GO:0001726;ruffle;0.00185421511761912!GO:0016126;sterol biosynthetic process;0.0020030600956549!GO:0019843;rRNA binding;0.00201220064321834!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00201324044545283!GO:0045941;positive regulation of transcription;0.00206070691493583!GO:0005769;early endosome;0.00209273008333787!GO:0051920;peroxiredoxin activity;0.00212489425894835!GO:0046467;membrane lipid biosynthetic process;0.00251975643292388!GO:0032561;guanyl ribonucleotide binding;0.00252277723128337!GO:0019001;guanyl nucleotide binding;0.00252277723128337!GO:0000279;M phase;0.00264279830609715!GO:0018196;peptidyl-asparagine modification;0.00274070111113334!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00274070111113334!GO:0045893;positive regulation of transcription, DNA-dependent;0.0027667919377208!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00281449121529511!GO:0006839;mitochondrial transport;0.00282794676729153!GO:0004386;helicase activity;0.00291063766047596!GO:0043488;regulation of mRNA stability;0.00291063766047596!GO:0043487;regulation of RNA stability;0.00291063766047596!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00294805334546844!GO:0008026;ATP-dependent helicase activity;0.00300069719090538!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00315235176682571!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00315235176682571!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00315235176682571!GO:0006626;protein targeting to mitochondrion;0.00324861618108113!GO:0046489;phosphoinositide biosynthetic process;0.00329154984200926!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00330811065008618!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00330811065008618!GO:0000151;ubiquitin ligase complex;0.00342089677521173!GO:0007050;cell cycle arrest;0.0034280882854455!GO:0005885;Arp2/3 protein complex;0.00384141904105327!GO:0005048;signal sequence binding;0.00384141904105327!GO:0007040;lysosome organization and biogenesis;0.00404984743258643!GO:0005765;lysosomal membrane;0.0040661247376141!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00407408549424506!GO:0006414;translational elongation;0.00432463933581773!GO:0006790;sulfur metabolic process;0.00449575200575258!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0045555424744391!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00480956397238286!GO:0004576;oligosaccharyl transferase activity;0.00497958645789081!GO:0006695;cholesterol biosynthetic process;0.00500431606093773!GO:0005741;mitochondrial outer membrane;0.00502744185938215!GO:0017166;vinculin binding;0.00506178400308072!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00527412949986151!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00528116002542058!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00528116002542058!GO:0044437;vacuolar part;0.00542969378584691!GO:0007033;vacuole organization and biogenesis;0.00555024357659995!GO:0006778;porphyrin metabolic process;0.00560499358044888!GO:0033013;tetrapyrrole metabolic process;0.00560499358044888!GO:0005874;microtubule;0.00569208209590254!GO:0048471;perinuclear region of cytoplasm;0.0060973931135872!GO:0043021;ribonucleoprotein binding;0.00638851948547636!GO:0033673;negative regulation of kinase activity;0.00638851948547636!GO:0006469;negative regulation of protein kinase activity;0.00638851948547636!GO:0031968;organelle outer membrane;0.00657412169758294!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00680008165347504!GO:0006402;mRNA catabolic process;0.00682871276029414!GO:0006779;porphyrin biosynthetic process;0.00690289142857229!GO:0033014;tetrapyrrole biosynthetic process;0.00690289142857229!GO:0006613;cotranslational protein targeting to membrane;0.00698247534011013!GO:0051348;negative regulation of transferase activity;0.00735163701461962!GO:0019867;outer membrane;0.00740793663593021!GO:0051168;nuclear export;0.00742485679753043!GO:0051098;regulation of binding;0.00748081365477321!GO:0007243;protein kinase cascade;0.0074961255627454!GO:0015631;tubulin binding;0.00767033317179707!GO:0006091;generation of precursor metabolites and energy;0.00812579312862488!GO:0030119;AP-type membrane coat adaptor complex;0.00823721893898136!GO:0043284;biopolymer biosynthetic process;0.00824067602424781!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00839724906928026!GO:0006979;response to oxidative stress;0.00879053155513968!GO:0031301;integral to organelle membrane;0.00887016103015291!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00907346430197129!GO:0006740;NADPH regeneration;0.00936117706537553!GO:0006098;pentose-phosphate shunt;0.00936117706537553!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00986417645939112!GO:0001666;response to hypoxia;0.00988313276238817!GO:0006650;glycerophospholipid metabolic process;0.00988313276238817!GO:0051028;mRNA transport;0.0101942914355895!GO:0048487;beta-tubulin binding;0.0111721752462102!GO:0016272;prefoldin complex;0.0111736649940288!GO:0030131;clathrin adaptor complex;0.0112078353455702!GO:0030137;COPI-coated vesicle;0.0112727160480712!GO:0030663;COPI coated vesicle membrane;0.0115347438294314!GO:0030126;COPI vesicle coat;0.0115347438294314!GO:0065009;regulation of a molecular function;0.0118433183910162!GO:0005813;centrosome;0.0120071755972992!GO:0005684;U2-dependent spliceosome;0.0120291959458899!GO:0006509;membrane protein ectodomain proteolysis;0.0120636648978838!GO:0033619;membrane protein proteolysis;0.0120636648978838!GO:0030658;transport vesicle membrane;0.0121727932679669!GO:0006595;polyamine metabolic process;0.0123795374731058!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0128128750062031!GO:0006350;transcription;0.0128431783162646!GO:0031543;peptidyl-proline dioxygenase activity;0.0129139986545154!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0132400056814407!GO:0015399;primary active transmembrane transporter activity;0.0132400056814407!GO:0030125;clathrin vesicle coat;0.0133443305836012!GO:0030665;clathrin coated vesicle membrane;0.0133443305836012!GO:0042802;identical protein binding;0.0136951529155768!GO:0003729;mRNA binding;0.0137699508950979!GO:0009165;nucleotide biosynthetic process;0.013884065081336!GO:0004860;protein kinase inhibitor activity;0.0140524664831824!GO:0003724;RNA helicase activity;0.0149257152199118!GO:0019798;procollagen-proline dioxygenase activity;0.0151181655562268!GO:0046483;heterocycle metabolic process;0.015361177664358!GO:0030880;RNA polymerase complex;0.0157953982325246!GO:0006897;endocytosis;0.0161198477839696!GO:0010324;membrane invagination;0.0161198477839696!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0164214302515044!GO:0008637;apoptotic mitochondrial changes;0.0166969070139633!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0171107366875137!GO:0042168;heme metabolic process;0.0183440823500153!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0187541083436471!GO:0003756;protein disulfide isomerase activity;0.0193324152453361!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193324152453361!GO:0006082;organic acid metabolic process;0.0194610828193405!GO:0005581;collagen;0.0195130864865773!GO:0016197;endosome transport;0.0195446095422031!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0203877208013397!GO:0015002;heme-copper terminal oxidase activity;0.0203877208013397!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0203877208013397!GO:0004129;cytochrome-c oxidase activity;0.0203877208013397!GO:0005815;microtubule organizing center;0.0206766443882439!GO:0043433;negative regulation of transcription factor activity;0.0207888458630406!GO:0031323;regulation of cellular metabolic process;0.0211047432620973!GO:0019752;carboxylic acid metabolic process;0.0211124524210344!GO:0043414;biopolymer methylation;0.0217506893048612!GO:0005862;muscle thin filament tropomyosin;0.0218284188065594!GO:0035258;steroid hormone receptor binding;0.0220598886721843!GO:0048518;positive regulation of biological process;0.0222284043698149!GO:0042158;lipoprotein biosynthetic process;0.0222852970402712!GO:0008033;tRNA processing;0.0222852970402712!GO:0006783;heme biosynthetic process;0.0227147477727441!GO:0006338;chromatin remodeling;0.0227147477727441!GO:0006007;glucose catabolic process;0.0229177395948994!GO:0046519;sphingoid metabolic process;0.0230327062675268!GO:0051252;regulation of RNA metabolic process;0.0231556157358084!GO:0030660;Golgi-associated vesicle membrane;0.0231556157358084!GO:0005637;nuclear inner membrane;0.0236454460588683!GO:0051059;NF-kappaB binding;0.0241629705807956!GO:0006383;transcription from RNA polymerase III promoter;0.0241629705807956!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.024165578506917!GO:0006506;GPI anchor biosynthetic process;0.0244166522093438!GO:0005869;dynactin complex;0.0249051700277074!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0252018595427384!GO:0010257;NADH dehydrogenase complex assembly;0.0252018595427384!GO:0033108;mitochondrial respiratory chain complex assembly;0.0252018595427384!GO:0032507;maintenance of cellular protein localization;0.0252609994261798!GO:0006891;intra-Golgi vesicle-mediated transport;0.0258468053765382!GO:0003746;translation elongation factor activity;0.0258687181317115!GO:0000049;tRNA binding;0.0261776702386328!GO:0008186;RNA-dependent ATPase activity;0.0277571062303017!GO:0033559;unsaturated fatty acid metabolic process;0.0289041800437354!GO:0006636;unsaturated fatty acid biosynthetic process;0.0289041800437354!GO:0019318;hexose metabolic process;0.0292311889260782!GO:0006672;ceramide metabolic process;0.0299657232009498!GO:0046822;regulation of nucleocytoplasmic transport;0.0303859539678474!GO:0007346;regulation of progression through mitotic cell cycle;0.0304901064734027!GO:0008629;induction of apoptosis by intracellular signals;0.0304952378586597!GO:0016584;nucleosome positioning;0.0304952378586597!GO:0030659;cytoplasmic vesicle membrane;0.0307349902888855!GO:0006401;RNA catabolic process;0.0307879817080729!GO:0008652;amino acid biosynthetic process;0.0307879817080729!GO:0000084;S phase of mitotic cell cycle;0.0313146888913577!GO:0030134;ER to Golgi transport vesicle;0.0314214676592314!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0314743491497895!GO:0005996;monosaccharide metabolic process;0.0321131377508458!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0321996282291518!GO:0000428;DNA-directed RNA polymerase complex;0.0321996282291518!GO:0051087;chaperone binding;0.0332044603096963!GO:0000096;sulfur amino acid metabolic process;0.0343865856735034!GO:0006730;one-carbon compound metabolic process;0.0348084510361023!GO:0006505;GPI anchor metabolic process;0.0350396445955485!GO:0016860;intramolecular oxidoreductase activity;0.0355566840848908!GO:0005819;spindle;0.0355686394982168!GO:0000118;histone deacetylase complex;0.0356267309192257!GO:0016363;nuclear matrix;0.0358623038593023!GO:0030521;androgen receptor signaling pathway;0.0362846645941257!GO:0006767;water-soluble vitamin metabolic process;0.0362846645941257!GO:0031418;L-ascorbic acid binding;0.0372009853758514!GO:0030032;lamellipodium biogenesis;0.0378574255520488!GO:0006289;nucleotide-excision repair;0.0378816520704227!GO:0051270;regulation of cell motility;0.0381201047652978!GO:0044433;cytoplasmic vesicle part;0.0394442740150033!GO:0004674;protein serine/threonine kinase activity;0.0398378242399151!GO:0030384;phosphoinositide metabolic process;0.0399013534536617!GO:0045792;negative regulation of cell size;0.0401902412574731!GO:0006612;protein targeting to membrane;0.0402833492602876!GO:0050178;phenylpyruvate tautomerase activity;0.0403417321291979!GO:0005975;carbohydrate metabolic process;0.0405841953814821!GO:0006352;transcription initiation;0.0405841953814821!GO:0000123;histone acetyltransferase complex;0.0407171201201922!GO:0031072;heat shock protein binding;0.040986926280703!GO:0008538;proteasome activator activity;0.0411996269463744!GO:0008139;nuclear localization sequence binding;0.041422562794341!GO:0001836;release of cytochrome c from mitochondria;0.0422499834349631!GO:0006733;oxidoreduction coenzyme metabolic process;0.0422499834349631!GO:0030308;negative regulation of cell growth;0.0422703148562979!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0427705796493554!GO:0032508;DNA duplex unwinding;0.0428635803297339!GO:0032392;DNA geometric change;0.0428635803297339!GO:0031529;ruffle organization and biogenesis;0.0429234859766258!GO:0006520;amino acid metabolic process;0.0434952777265602!GO:0006497;protein amino acid lipidation;0.0436429455782359!GO:0032259;methylation;0.0444198151882049!GO:0035035;histone acetyltransferase binding;0.0447824456377213!GO:0016741;transferase activity, transferring one-carbon groups;0.0449759350981218!GO:0051539;4 iron, 4 sulfur cluster binding;0.0449759350981218!GO:0022890;inorganic cation transmembrane transporter activity;0.0454869994006522!GO:0006643;membrane lipid metabolic process;0.0454869994006522!GO:0016585;chromatin remodeling complex;0.0454869994006522!GO:0010468;regulation of gene expression;0.0461658298181512!GO:0003711;transcription elongation regulator activity;0.0463098776470865!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.046312408880873!GO:0051128;regulation of cellular component organization and biogenesis;0.0470362421761285!GO:0030508;thiol-disulfide exchange intermediate activity;0.0472031322585112!GO:0009303;rRNA transcription;0.0472623810310754!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0474454787926908!GO:0007265;Ras protein signal transduction;0.0486315814762083!GO:0030145;manganese ion binding;0.0486962433179074!GO:0006818;hydrogen transport;0.0488304907384831!GO:0050811;GABA receptor binding;0.049132553887242!GO:0006611;protein export from nucleus;0.0496008233773692 | |||
|sample_id=11661 | |sample_id=11661 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=cerebellum | |sample_tissue=cerebellum | ||
|top_motifs=GTF2A1,2:1.89011876365;ZIC1..3:1.88048728284;NR6A1:1.5966875845;PBX1:1.40829817383;TFAP4:1.27971126328;RREB1:1.26769389798;GFI1:1.26172020124;PATZ1:1.25446706665;VSX1,2:1.22925621442;TFAP2B:1.21984422348;XCPE1{core}:1.1832045648;EBF1:1.17554687681;TLX1..3_NFIC{dimer}:1.13855065985;MZF1:1.13289764436;ESR1:1.003679522;LHX3,4:0.952312249503;SOX{8,9,10}:0.936677953243;TFAP2{A,C}:0.920389050375;OCT4_SOX2{dimer}:0.888285060571;SP1:0.866825099904;SMAD1..7,9:0.855186386138;LEF1_TCF7_TCF7L1,2:0.847501215092;GTF2I:0.829465075615;HIC1:0.809646854537;POU2F1..3:0.807155338795;NR3C1:0.800414723428;TFCP2:0.768258314637;SOX5:0.746717882947;SRF:0.742957845571;ZNF148:0.742663468377;RXRA_VDR{dimer}:0.73535842205;NR5A1,2:0.733155702674;ZNF423:0.728196356546;MTE{core}:0.723467476428;KLF4:0.711394117018;LMO2:0.703549565491;POU5F1:0.699691918087;HES1:0.693894378282;GFI1B:0.68539456152;NANOG{mouse}:0.646380168454;ZNF384:0.643636913269;RXR{A,B,G}:0.627853426679;PAX5:0.617128503556;DBP:0.611441060023;ZNF238:0.603236965633;TBP:0.600033683402;TEAD1:0.591863476966;IKZF1:0.58805113935;MTF1:0.587016934153;SOX2:0.584797455659;MAZ:0.506744463223;NKX2-3_NKX2-5:0.501286788594;HOX{A5,B5}:0.491248223914;NKX6-1,2:0.490471576355;SOX17:0.485363300006;ESRRA:0.46905592279;ALX4:0.463038442368;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.460216673532;NFY{A,B,C}:0.442446827689;CRX:0.43454535582;ZBTB6:0.433724835514;EGR1..3:0.430683069964;GZF1:0.420352163407;STAT2,4,6:0.399984146202;REST:0.399884442408;HMX1:0.389362640148;EP300:0.383112482451;TOPORS:0.367360510287;GCM1,2:0.33175523948;FOXL1:0.30106704757;PRRX1,2:0.278675138864;TBX4,5:0.27624111092;JUN:0.260750972879;HOX{A6,A7,B6,B7}:0.243241242601;MED-1{core}:0.229099475024;UFEwm:0.212345657589;RFX1:0.209412946689;TP53:0.207533016605;BREu{core}:0.179758421951;NFE2L2:0.164311195099;ATF6:0.144952312677;GLI1..3:0.138129027795;NKX3-1:0.137951324339;MYFfamily:0.118015295993;NKX2-1,4:0.107454336566;NHLH1,2:0.0873580934058;TFDP1:0.0870889774756;PAX6:0.0824009696248;MYBL2:0.0822969994426;HNF1A:0.0811789489124;ONECUT1,2:0.0727256177198;PAX8:0.0716397114131;FOXM1:0.0673411346367;HNF4A_NR2F1,2:0.0622142671045;NKX2-2,8:0.0580421689102;PAX1,9:0.0542407285403;ZFP161:0.0432738525376;MEF2{A,B,C,D}:0.0430265943895;NANOG:0.0251894083648;NR1H4:0.0157146731469;HOX{A4,D4}:-0.0121299741619;SPZ1:-0.0191271472314;RUNX1..3:-0.0306765769514;ZNF143:-0.0572885250903;STAT5{A,B}:-0.06074302578;TAL1_TCF{3,4,12}:-0.072209629689;CEBPA,B_DDIT3:-0.0743551991135;YY1:-0.104298553292;STAT1,3:-0.122536106415;NFIX:-0.124763089271;CDC5L:-0.128391900304;POU6F1:-0.129825493876;AR:-0.157704359167;MYOD1:-0.161280798357;CUX2:-0.167505639774;FOS_FOS{B,L1}_JUN{B,D}:-0.173430071393;bHLH_family:-0.183959750401;FOSL2:-0.18541203425;BACH2:-0.203552690928;HAND1,2:-0.217651446729;PRDM1:-0.223161628837;EN1,2:-0.241825787268;NFE2L1:-0.251344973188;E2F1..5:-0.267648268117;NFKB1_REL_RELA:-0.271017895912;AHR_ARNT_ARNT2:-0.277289327263;SNAI1..3:-0.3103627956;NFE2:-0.343591935006;HLF:-0.366344993914;T:-0.379515653539;PPARG:-0.384059126206;FOXP3:-0.394922949323;GATA4:-0.417354148197;RBPJ:-0.439731192946;NKX3-2:-0.471300246612;POU3F1..4:-0.472598164783;NFIL3:-0.480617457181;FOXP1:-0.489135458832;GATA6:-0.510874221722;XBP1:-0.548923819661;NRF1:-0.554747283708;PAX3,7:-0.574369213507;HBP1_HMGB_SSRP1_UBTF:-0.590672586386;NFATC1..3:-0.594603008008;AIRE:-0.604774600713;ATF4:-0.615756442599;FOXA2:-0.617719599279;MAFB:-0.6180144911;PAX2:-0.624609144557;IKZF2:-0.627562430996;FOX{D1,D2}:-0.632202296077;POU1F1:-0.64821669763;ADNP_IRX_SIX_ZHX:-0.669750194905;MYB:-0.670435141673;CDX1,2,4:-0.671165036825;RORA:-0.673922361997;DMAP1_NCOR{1,2}_SMARC:-0.685873467055;ETS1,2:-0.687809915884;FOXD3:-0.689771713576;TGIF1:-0.691012962291;SPIB:-0.698842156187;FOXQ1:-0.716380577874;HMGA1,2:-0.730718582383;PITX1..3:-0.768543708819;BPTF:-0.770342811512;HIF1A:-0.774060251223;ZEB1:-0.803722488841;HOXA9_MEIS1:-0.828839892695;ELK1,4_GABP{A,B1}:-0.839871769225;EVI1:-0.843202122193;HSF1,2:-0.845242311681;ATF2:-0.864451317018;SPI1:-0.881553183878;RFX2..5_RFXANK_RFXAP:-0.893292444286;PDX1:-0.920816296966;IRF1,2:-0.943614814297;FOX{F1,F2,J1}:-0.956988032973;ALX1:-0.9780663286;IRF7:-0.987211079238;ATF5_CREB3:-1.00278433641;CREB1:-1.0376434489;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21785306603;ARID5B:-1.26839631345;PAX4:-1.30809956939;TEF:-1.30946882216;FOXO1,3,4:-1.33158491741;ZBTB16:-1.33790739684;ELF1,2,4:-1.37068726711;SREBF1,2:-1.39512344487;TLX2:-1.42247507844;FOXN1:-1.73597501095;FOX{I1,J2}:-1.7942618638 | |top_motifs=GTF2A1,2:1.89011876365;ZIC1..3:1.88048728284;NR6A1:1.5966875845;PBX1:1.40829817383;TFAP4:1.27971126328;RREB1:1.26769389798;GFI1:1.26172020124;PATZ1:1.25446706665;VSX1,2:1.22925621442;TFAP2B:1.21984422348;XCPE1{core}:1.1832045648;EBF1:1.17554687681;TLX1..3_NFIC{dimer}:1.13855065985;MZF1:1.13289764436;ESR1:1.003679522;LHX3,4:0.952312249503;SOX{8,9,10}:0.936677953243;TFAP2{A,C}:0.920389050375;OCT4_SOX2{dimer}:0.888285060571;SP1:0.866825099904;SMAD1..7,9:0.855186386138;LEF1_TCF7_TCF7L1,2:0.847501215092;GTF2I:0.829465075615;HIC1:0.809646854537;POU2F1..3:0.807155338795;NR3C1:0.800414723428;TFCP2:0.768258314637;SOX5:0.746717882947;SRF:0.742957845571;ZNF148:0.742663468377;RXRA_VDR{dimer}:0.73535842205;NR5A1,2:0.733155702674;ZNF423:0.728196356546;MTE{core}:0.723467476428;KLF4:0.711394117018;LMO2:0.703549565491;POU5F1:0.699691918087;HES1:0.693894378282;GFI1B:0.68539456152;NANOG{mouse}:0.646380168454;ZNF384:0.643636913269;RXR{A,B,G}:0.627853426679;PAX5:0.617128503556;DBP:0.611441060023;ZNF238:0.603236965633;TBP:0.600033683402;TEAD1:0.591863476966;IKZF1:0.58805113935;MTF1:0.587016934153;SOX2:0.584797455659;MAZ:0.506744463223;NKX2-3_NKX2-5:0.501286788594;HOX{A5,B5}:0.491248223914;NKX6-1,2:0.490471576355;SOX17:0.485363300006;ESRRA:0.46905592279;ALX4:0.463038442368;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.460216673532;NFY{A,B,C}:0.442446827689;CRX:0.43454535582;ZBTB6:0.433724835514;EGR1..3:0.430683069964;GZF1:0.420352163407;STAT2,4,6:0.399984146202;REST:0.399884442408;HMX1:0.389362640148;EP300:0.383112482451;TOPORS:0.367360510287;GCM1,2:0.33175523948;FOXL1:0.30106704757;PRRX1,2:0.278675138864;TBX4,5:0.27624111092;JUN:0.260750972879;HOX{A6,A7,B6,B7}:0.243241242601;MED-1{core}:0.229099475024;UFEwm:0.212345657589;RFX1:0.209412946689;TP53:0.207533016605;BREu{core}:0.179758421951;NFE2L2:0.164311195099;ATF6:0.144952312677;GLI1..3:0.138129027795;NKX3-1:0.137951324339;MYFfamily:0.118015295993;NKX2-1,4:0.107454336566;NHLH1,2:0.0873580934058;TFDP1:0.0870889774756;PAX6:0.0824009696248;MYBL2:0.0822969994426;HNF1A:0.0811789489124;ONECUT1,2:0.0727256177198;PAX8:0.0716397114131;FOXM1:0.0673411346367;HNF4A_NR2F1,2:0.0622142671045;NKX2-2,8:0.0580421689102;PAX1,9:0.0542407285403;ZFP161:0.0432738525376;MEF2{A,B,C,D}:0.0430265943895;NANOG:0.0251894083648;NR1H4:0.0157146731469;HOX{A4,D4}:-0.0121299741619;SPZ1:-0.0191271472314;RUNX1..3:-0.0306765769514;ZNF143:-0.0572885250903;STAT5{A,B}:-0.06074302578;TAL1_TCF{3,4,12}:-0.072209629689;CEBPA,B_DDIT3:-0.0743551991135;YY1:-0.104298553292;STAT1,3:-0.122536106415;NFIX:-0.124763089271;CDC5L:-0.128391900304;POU6F1:-0.129825493876;AR:-0.157704359167;MYOD1:-0.161280798357;CUX2:-0.167505639774;FOS_FOS{B,L1}_JUN{B,D}:-0.173430071393;bHLH_family:-0.183959750401;FOSL2:-0.18541203425;BACH2:-0.203552690928;HAND1,2:-0.217651446729;PRDM1:-0.223161628837;EN1,2:-0.241825787268;NFE2L1:-0.251344973188;E2F1..5:-0.267648268117;NFKB1_REL_RELA:-0.271017895912;AHR_ARNT_ARNT2:-0.277289327263;SNAI1..3:-0.3103627956;NFE2:-0.343591935006;HLF:-0.366344993914;T:-0.379515653539;PPARG:-0.384059126206;FOXP3:-0.394922949323;GATA4:-0.417354148197;RBPJ:-0.439731192946;NKX3-2:-0.471300246612;POU3F1..4:-0.472598164783;NFIL3:-0.480617457181;FOXP1:-0.489135458832;GATA6:-0.510874221722;XBP1:-0.548923819661;NRF1:-0.554747283708;PAX3,7:-0.574369213507;HBP1_HMGB_SSRP1_UBTF:-0.590672586386;NFATC1..3:-0.594603008008;AIRE:-0.604774600713;ATF4:-0.615756442599;FOXA2:-0.617719599279;MAFB:-0.6180144911;PAX2:-0.624609144557;IKZF2:-0.627562430996;FOX{D1,D2}:-0.632202296077;POU1F1:-0.64821669763;ADNP_IRX_SIX_ZHX:-0.669750194905;MYB:-0.670435141673;CDX1,2,4:-0.671165036825;RORA:-0.673922361997;DMAP1_NCOR{1,2}_SMARC:-0.685873467055;ETS1,2:-0.687809915884;FOXD3:-0.689771713576;TGIF1:-0.691012962291;SPIB:-0.698842156187;FOXQ1:-0.716380577874;HMGA1,2:-0.730718582383;PITX1..3:-0.768543708819;BPTF:-0.770342811512;HIF1A:-0.774060251223;ZEB1:-0.803722488841;HOXA9_MEIS1:-0.828839892695;ELK1,4_GABP{A,B1}:-0.839871769225;EVI1:-0.843202122193;HSF1,2:-0.845242311681;ATF2:-0.864451317018;SPI1:-0.881553183878;RFX2..5_RFXANK_RFXAP:-0.893292444286;PDX1:-0.920816296966;IRF1,2:-0.943614814297;FOX{F1,F2,J1}:-0.956988032973;ALX1:-0.9780663286;IRF7:-0.987211079238;ATF5_CREB3:-1.00278433641;CREB1:-1.0376434489;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21785306603;ARID5B:-1.26839631345;PAX4:-1.30809956939;TEF:-1.30946882216;FOXO1,3,4:-1.33158491741;ZBTB16:-1.33790739684;ELF1,2,4:-1.37068726711;SREBF1,2:-1.39512344487;TLX2:-1.42247507844;FOXN1:-1.73597501095;FOX{I1,J2}:-1.7942618638 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11661-122F5;search_select_hide=table117:FF:11661-122F5 | |||
}} | }} | ||
Latest revision as of 18:13, 4 June 2020
| Name: | Astrocyte - cerebellum, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12117 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12117
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12117
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0395 |
| 10 | 10 | 0.00896 |
| 100 | 100 | 0.825 |
| 101 | 101 | 0.283 |
| 102 | 102 | 0.206 |
| 103 | 103 | 0.0791 |
| 104 | 104 | 0.443 |
| 105 | 105 | 0.0844 |
| 106 | 106 | 0.508 |
| 107 | 107 | 0.00617 |
| 108 | 108 | 0.773 |
| 109 | 109 | 0.53 |
| 11 | 11 | 0.924 |
| 110 | 110 | 0.95 |
| 111 | 111 | 0.0455 |
| 112 | 112 | 0.218 |
| 113 | 113 | 0.314 |
| 114 | 114 | 0.0403 |
| 115 | 115 | 0.427 |
| 116 | 116 | 0.103 |
| 117 | 117 | 0.0581 |
| 118 | 118 | 0.166 |
| 119 | 119 | 0.638 |
| 12 | 12 | 0.719 |
| 120 | 120 | 0.572 |
| 121 | 121 | 0.639 |
| 122 | 122 | 0.927 |
| 123 | 123 | 0.0196 |
| 124 | 124 | 0.833 |
| 125 | 125 | 0.398 |
| 126 | 126 | 0.591 |
| 127 | 127 | 0.586 |
| 128 | 128 | 0.273 |
| 129 | 129 | 0.637 |
| 13 | 13 | 0.347 |
| 130 | 130 | 0.132 |
| 131 | 131 | 0.138 |
| 132 | 132 | 0.339 |
| 133 | 133 | 0.994 |
| 134 | 134 | 0.231 |
| 135 | 135 | 0.697 |
| 136 | 136 | 0.827 |
| 137 | 137 | 0.0113 |
| 138 | 138 | 0.114 |
| 139 | 139 | 0.106 |
| 14 | 14 | 0.891 |
| 140 | 140 | 0.9 |
| 141 | 141 | 0.167 |
| 142 | 142 | 0.199 |
| 143 | 143 | 0.925 |
| 144 | 144 | 0.681 |
| 145 | 145 | 0.434 |
| 146 | 146 | 0.304 |
| 147 | 147 | 0.433 |
| 148 | 148 | 0.0634 |
| 149 | 149 | 0.337 |
| 15 | 15 | 0.186 |
| 150 | 150 | 0.42 |
| 151 | 151 | 0.914 |
| 152 | 152 | 0.463 |
| 153 | 153 | 0.0281 |
| 154 | 154 | 0.485 |
| 155 | 155 | 0.031 |
| 156 | 156 | 0.839 |
| 157 | 157 | 0.435 |
| 158 | 158 | 0.115 |
| 159 | 159 | 0.798 |
| 16 | 16 | 0.925 |
| 160 | 160 | 0.266 |
| 161 | 161 | 0.562 |
| 162 | 162 | 0.149 |
| 163 | 163 | 0.463 |
| 164 | 164 | 0.086 |
| 165 | 165 | 0.113 |
| 166 | 166 | 0.459 |
| 167 | 167 | 0.308 |
| 168 | 168 | 0.131 |
| 169 | 169 | 0.341 |
| 17 | 17 | 0.938 |
| 18 | 18 | 0.652 |
| 19 | 19 | 0.249 |
| 2 | 2 | 0.696 |
| 20 | 20 | 0.62 |
| 21 | 21 | 0.333 |
| 22 | 22 | 0.589 |
| 23 | 23 | 0.74 |
| 24 | 24 | 0.437 |
| 25 | 25 | 0.318 |
| 26 | 26 | 0.715 |
| 27 | 27 | 0.801 |
| 28 | 28 | 0.182 |
| 29 | 29 | 0.24 |
| 3 | 3 | 0.144 |
| 30 | 30 | 0.0719 |
| 31 | 31 | 0.27 |
| 32 | 32 | 6.37039e-5 |
| 33 | 33 | 0.837 |
| 34 | 34 | 0.184 |
| 35 | 35 | 0.584 |
| 36 | 36 | 0.117 |
| 37 | 37 | 0.248 |
| 38 | 38 | 0.635 |
| 39 | 39 | 0.548 |
| 4 | 4 | 0.574 |
| 40 | 40 | 0.714 |
| 41 | 41 | 0.439 |
| 42 | 42 | 0.155 |
| 43 | 43 | 0.357 |
| 44 | 44 | 0.76 |
| 45 | 45 | 0.454 |
| 46 | 46 | 0.962 |
| 47 | 47 | 0.311 |
| 48 | 48 | 0.835 |
| 49 | 49 | 0.327 |
| 5 | 5 | 0.215 |
| 50 | 50 | 0.74 |
| 51 | 51 | 0.885 |
| 52 | 52 | 0.489 |
| 53 | 53 | 0.367 |
| 54 | 54 | 0.861 |
| 55 | 55 | 0.564 |
| 56 | 56 | 0.704 |
| 57 | 57 | 0.916 |
| 58 | 58 | 0.137 |
| 59 | 59 | 0.162 |
| 6 | 6 | 0.56 |
| 60 | 60 | 0.998 |
| 61 | 61 | 0.195 |
| 62 | 62 | 0.213 |
| 63 | 63 | 0.912 |
| 64 | 64 | 0.319 |
| 65 | 65 | 0.311 |
| 66 | 66 | 0.781 |
| 67 | 67 | 0.631 |
| 68 | 68 | 0.00322 |
| 69 | 69 | 0.205 |
| 7 | 7 | 0.453 |
| 70 | 70 | 0.803 |
| 71 | 71 | 0.14 |
| 72 | 72 | 0.284 |
| 73 | 73 | 0.867 |
| 74 | 74 | 0.324 |
| 75 | 75 | 0.0112 |
| 76 | 76 | 0.00304 |
| 77 | 77 | 0.269 |
| 78 | 78 | 0.0728 |
| 79 | 79 | 0.106 |
| 8 | 8 | 0.56 |
| 80 | 80 | 0.524 |
| 81 | 81 | 0.868 |
| 82 | 82 | 0.865 |
| 83 | 83 | 0.805 |
| 84 | 84 | 0.56 |
| 85 | 85 | 0.768 |
| 86 | 86 | 0.332 |
| 87 | 87 | 0.477 |
| 88 | 88 | 0.43 |
| 89 | 89 | 0.127 |
| 9 | 9 | 0.506 |
| 90 | 90 | 0.0157 |
| 91 | 91 | 0.751 |
| 92 | 92 | 0.376 |
| 93 | 93 | 0.163 |
| 94 | 94 | 0.758 |
| 95 | 95 | 0.149 |
| 96 | 96 | 0.283 |
| 97 | 97 | 0.981 |
| 98 | 98 | 0.71 |
| 99 | 99 | 0.0106 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12117
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000195 human astrocyte of the cerebellum sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002603 (astrocyte of the cerebellum)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002037 (cerebellum)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000195 (human astrocyte of the cerebellum sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
