FF:10033-101E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004952 | ||
|accession_numbers=CAGE;DRX008711;DRR009583;DRZ001008;DRZ002393;DRZ012358;DRZ013743 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010033 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10033-101E6 | |id=FF:10033-101E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010033 | ||
|is_obsolete= | |||
|library_id=CNhs10640 | |||
|library_id_phase_based=2:CNhs10640 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10033 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10033 | |||
|name=pons, adult, pool1 | |name=pons, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10640,LSID658,release008,COMPLETED | |profile_hcage=CNhs10640,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636572 | |rna_catalog_number=Cat:636572 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+08 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.48115587673178e-278!GO:0005737;cytoplasm;4.15293750909862e-164!GO:0044444;cytoplasmic part;7.22086561841134e-111!GO:0043226;organelle;2.03104087709141e-98!GO:0043229;intracellular organelle;4.44116821030808e-98!GO:0043227;membrane-bound organelle;5.67860787381024e-91!GO:0043231;intracellular membrane-bound organelle;5.70715524607306e-91!GO:0044422;organelle part;1.19226805427395e-64!GO:0044446;intracellular organelle part;8.32289228094708e-64!GO:0005515;protein binding;6.98385958253595e-59!GO:0032991;macromolecular complex;5.78894741896853e-54!GO:0016043;cellular component organization and biogenesis;6.25816075786942e-45!GO:0005739;mitochondrion;2.24738788586989e-43!GO:0033036;macromolecule localization;1.24179626470515e-42!GO:0015031;protein transport;3.82188998999018e-41!GO:0031090;organelle membrane;3.47159978561069e-40!GO:0008104;protein localization;3.05748197732656e-39!GO:0045184;establishment of protein localization;2.09935243610119e-38!GO:0003723;RNA binding;1.09586214661782e-37!GO:0030529;ribonucleoprotein complex;5.83475630645746e-36!GO:0046907;intracellular transport;1.21437658262106e-31!GO:0044429;mitochondrial part;1.88703717923512e-31!GO:0043234;protein complex;2.35967881095709e-30!GO:0051649;establishment of cellular localization;2.24948320161721e-29!GO:0016192;vesicle-mediated transport;3.19976743268594e-29!GO:0051641;cellular localization;3.19976743268594e-29!GO:0043233;organelle lumen;5.27729954524197e-29!GO:0031974;membrane-enclosed lumen;5.27729954524197e-29!GO:0031975;envelope;1.15990734903234e-27!GO:0031967;organelle envelope;1.60607159415829e-27!GO:0044428;nuclear part;4.59450707728666e-27!GO:0044238;primary metabolic process;5.74705988756556e-26!GO:0019538;protein metabolic process;3.18886797126721e-25!GO:0005829;cytosol;4.99007672050301e-24!GO:0044237;cellular metabolic process;5.95076855566638e-24!GO:0016071;mRNA metabolic process;1.14137173024509e-23!GO:0006886;intracellular protein transport;2.81857672751576e-23!GO:0006396;RNA processing;6.86916523321546e-22!GO:0005740;mitochondrial envelope;1.04544229132441e-21!GO:0044260;cellular macromolecule metabolic process;1.22701964098171e-21!GO:0043170;macromolecule metabolic process;1.59689769050177e-21!GO:0031966;mitochondrial membrane;3.0854830054721e-21!GO:0006119;oxidative phosphorylation;3.46759791742934e-21!GO:0005794;Golgi apparatus;3.46759791742934e-21!GO:0008380;RNA splicing;7.89783277832014e-21!GO:0044267;cellular protein metabolic process;8.28066183662001e-21!GO:0031982;vesicle;1.2640807534005e-19!GO:0006397;mRNA processing;1.54660313059812e-19!GO:0009058;biosynthetic process;1.89399971198731e-19!GO:0006996;organelle organization and biogenesis;3.26662138119559e-19!GO:0031410;cytoplasmic vesicle;4.6449632079571e-19!GO:0019866;organelle inner membrane;7.71784885289655e-19!GO:0005840;ribosome;8.37579693735066e-19!GO:0005743;mitochondrial inner membrane;1.96734033921307e-18!GO:0031988;membrane-bound vesicle;2.32385536855843e-18!GO:0016023;cytoplasmic membrane-bound vesicle;6.56686221821123e-18!GO:0000166;nucleotide binding;1.05316048304106e-17!GO:0005634;nucleus;1.5737358198801e-17!GO:0065003;macromolecular complex assembly;2.27785620668108e-17!GO:0006412;translation;2.41194015748668e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6356634644222e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.69229048074867e-17!GO:0016462;pyrophosphatase activity;3.8276227481042e-17!GO:0017111;nucleoside-triphosphatase activity;3.2570607396995e-16!GO:0012505;endomembrane system;4.24107262089655e-16!GO:0031981;nuclear lumen;1.94842771696321e-15!GO:0022607;cellular component assembly;1.98124404307705e-15!GO:0044455;mitochondrial membrane part;9.85990462447479e-15!GO:0003735;structural constituent of ribosome;1.45274760638683e-14!GO:0006512;ubiquitin cycle;1.52294628097329e-14!GO:0005746;mitochondrial respiratory chain;2.12431067796e-14!GO:0009059;macromolecule biosynthetic process;2.29669626272432e-14!GO:0044249;cellular biosynthetic process;2.3912171418872e-14!GO:0016874;ligase activity;4.07959963277737e-14!GO:0048770;pigment granule;5.31184201140629e-14!GO:0042470;melanosome;5.31184201140629e-14!GO:0006457;protein folding;6.93476343068001e-14!GO:0005681;spliceosome;7.42271293575237e-14!GO:0032553;ribonucleotide binding;1.34356989858935e-13!GO:0032555;purine ribonucleotide binding;1.34356989858935e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.75785013068474e-13!GO:0003954;NADH dehydrogenase activity;1.75785013068474e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.75785013068474e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.4120198607373e-13!GO:0048193;Golgi vesicle transport;5.78341162453458e-13!GO:0017076;purine nucleotide binding;7.33307327320573e-13!GO:0045045;secretory pathway;1.24553292771182e-12!GO:0033279;ribosomal subunit;2.6187870390507e-12!GO:0031980;mitochondrial lumen;3.17400420303776e-12!GO:0005759;mitochondrial matrix;3.17400420303776e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.7738530549734e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0042773;ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.19769891915129e-11!GO:0045271;respiratory chain complex I;1.19769891915129e-11!GO:0005747;mitochondrial respiratory chain complex I;1.19769891915129e-11!GO:0007264;small GTPase mediated signal transduction;1.51036734190983e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54681601497647e-11!GO:0043412;biopolymer modification;2.20151008911791e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.46339789760733e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.71999416155112e-11!GO:0019941;modification-dependent protein catabolic process;2.91407135609971e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.91407135609971e-11!GO:0044257;cellular protein catabolic process;3.35407690412078e-11!GO:0006810;transport;4.96374794438681e-11!GO:0008092;cytoskeletal protein binding;5.86609323469554e-11!GO:0022618;protein-RNA complex assembly;6.9350681559729e-11!GO:0003924;GTPase activity;7.29130068785446e-11!GO:0005783;endoplasmic reticulum;9.00688623558466e-11!GO:0006464;protein modification process;9.33999004738684e-11!GO:0043283;biopolymer metabolic process;9.71919456936922e-11!GO:0008135;translation factor activity, nucleic acid binding;1.09679557020242e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.11870414503048e-10!GO:0051082;unfolded protein binding;1.15783294351262e-10!GO:0030695;GTPase regulator activity;1.47911896903463e-10!GO:0005768;endosome;1.57772171446979e-10!GO:0044265;cellular macromolecule catabolic process;1.66142682015201e-10!GO:0019829;cation-transporting ATPase activity;2.34001770804413e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.6326698853357e-10!GO:0044431;Golgi apparatus part;2.77772902454179e-10!GO:0008565;protein transporter activity;4.19945966066486e-10!GO:0007010;cytoskeleton organization and biogenesis;5.0644909034474e-10!GO:0043687;post-translational protein modification;5.94191624129919e-10!GO:0006605;protein targeting;6.86187994974297e-10!GO:0030135;coated vesicle;7.89438702582312e-10!GO:0005654;nucleoplasm;8.37857255964935e-10!GO:0016044;membrane organization and biogenesis;8.90886797550166e-10!GO:0005525;GTP binding;1.01083004739847e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.2747150748673e-09!GO:0043228;non-membrane-bound organelle;1.72492925982888e-09!GO:0043232;intracellular non-membrane-bound organelle;1.72492925982888e-09!GO:0005083;small GTPase regulator activity;1.76188655232935e-09!GO:0032940;secretion by cell;2.63851661510089e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.51448195315998e-09!GO:0044248;cellular catabolic process;4.33682253458457e-09!GO:0051186;cofactor metabolic process;4.77387562720428e-09!GO:0044445;cytosolic part;5.12751752339886e-09!GO:0051179;localization;5.31640738136695e-09!GO:0006461;protein complex assembly;6.0425264406219e-09!GO:0051234;establishment of localization;8.99725783709633e-09!GO:0015986;ATP synthesis coupled proton transport;1.17074780211239e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17074780211239e-08!GO:0044451;nucleoplasm part;1.22473788882582e-08!GO:0043285;biopolymer catabolic process;1.60933641362657e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.99898736789621e-08!GO:0030163;protein catabolic process;2.3744677513674e-08!GO:0032561;guanyl ribonucleotide binding;2.61935528722729e-08!GO:0019001;guanyl nucleotide binding;2.61935528722729e-08!GO:0019787;small conjugating protein ligase activity;4.2813328768515e-08!GO:0008639;small protein conjugating enzyme activity;5.05676487373099e-08!GO:0015631;tubulin binding;7.8071936873285e-08!GO:0009060;aerobic respiration;8.08758993989251e-08!GO:0003743;translation initiation factor activity;8.66719816809962e-08!GO:0000139;Golgi membrane;9.03264855354963e-08!GO:0004842;ubiquitin-protein ligase activity;9.10189069807336e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.56382452553483e-08!GO:0032559;adenyl ribonucleotide binding;1.00973797362761e-07!GO:0046034;ATP metabolic process;1.40828998929745e-07!GO:0006793;phosphorus metabolic process;1.47411069388745e-07!GO:0006796;phosphate metabolic process;1.47411069388745e-07!GO:0008134;transcription factor binding;1.49557862070655e-07!GO:0010467;gene expression;1.5115217792706e-07!GO:0045333;cellular respiration;1.52770790502988e-07!GO:0009057;macromolecule catabolic process;1.53084466453835e-07!GO:0006413;translational initiation;1.72864853855516e-07!GO:0015935;small ribosomal subunit;1.72864853855516e-07!GO:0048471;perinuclear region of cytoplasm;2.065899409219e-07!GO:0030029;actin filament-based process;2.14098968222148e-07!GO:0006163;purine nucleotide metabolic process;2.23073282364634e-07!GO:0006446;regulation of translational initiation;2.37806340597886e-07!GO:0015630;microtubule cytoskeleton;2.45470410884237e-07!GO:0005524;ATP binding;2.48884631253623e-07!GO:0016881;acid-amino acid ligase activity;2.99694760814933e-07!GO:0016604;nuclear body;3.09572640143048e-07!GO:0048475;coated membrane;3.12245632110706e-07!GO:0030117;membrane coat;3.12245632110706e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.2238622414777e-07!GO:0009150;purine ribonucleotide metabolic process;3.25568359578402e-07!GO:0044440;endosomal part;3.47838238679582e-07!GO:0010008;endosome membrane;3.47838238679582e-07!GO:0016607;nuclear speck;3.98893666614126e-07!GO:0030554;adenyl nucleotide binding;4.17585084179997e-07!GO:0005761;mitochondrial ribosome;4.36436228131872e-07!GO:0000313;organellar ribosome;4.36436228131872e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.84490413326172e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.84490413326172e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.17908033558036e-07!GO:0006754;ATP biosynthetic process;5.65659392243874e-07!GO:0006753;nucleoside phosphate metabolic process;5.65659392243874e-07!GO:0009141;nucleoside triphosphate metabolic process;6.00342680970959e-07!GO:0005635;nuclear envelope;6.31296737150709e-07!GO:0006164;purine nucleotide biosynthetic process;6.3291221014417e-07!GO:0006732;coenzyme metabolic process;6.67733066465035e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.61925930115935e-07!GO:0019899;enzyme binding;8.83574812582724e-07!GO:0031965;nuclear membrane;8.92019667785043e-07!GO:0009152;purine ribonucleotide biosynthetic process;9.02889374065705e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.4908939917402e-07!GO:0009259;ribonucleotide metabolic process;1.01782001407757e-06!GO:0016887;ATPase activity;1.06003542081595e-06!GO:0006897;endocytosis;1.17096582495481e-06!GO:0010324;membrane invagination;1.17096582495481e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.3783494631829e-06!GO:0000375;RNA splicing, via transesterification reactions;1.3783494631829e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.3783494631829e-06!GO:0031252;leading edge;1.52521965001375e-06!GO:0030136;clathrin-coated vesicle;1.53400986301177e-06!GO:0006099;tricarboxylic acid cycle;1.65900577343541e-06!GO:0046356;acetyl-CoA catabolic process;1.65900577343541e-06!GO:0042623;ATPase activity, coupled;1.74439147169706e-06!GO:0044432;endoplasmic reticulum part;2.24662863697624e-06!GO:0005905;coated pit;3.05034540590881e-06!GO:0003779;actin binding;3.06531707395459e-06!GO:0006913;nucleocytoplasmic transport;3.28648204857707e-06!GO:0005770;late endosome;3.84809140535128e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0043005;neuron projection;4.96813275576652e-06!GO:0051169;nuclear transport;5.23677350601305e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009260;ribonucleotide biosynthetic process;5.51495177405579e-06!GO:0009055;electron carrier activity;5.51495177405579e-06!GO:0007265;Ras protein signal transduction;5.81019044142574e-06!GO:0008287;protein serine/threonine phosphatase complex;6.0942340206282e-06!GO:0009109;coenzyme catabolic process;6.31806207524718e-06!GO:0006084;acetyl-CoA metabolic process;6.85338971296142e-06!GO:0005769;early endosome;7.26315260157186e-06!GO:0005874;microtubule;8.44140187405118e-06!GO:0045259;proton-transporting ATP synthase complex;8.62558282957014e-06!GO:0019717;synaptosome;1.05827168266724e-05!GO:0005730;nucleolus;1.33297466805545e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52148607433074e-05!GO:0016310;phosphorylation;1.55776355995419e-05!GO:0015934;large ribosomal subunit;1.57756530680154e-05!GO:0005773;vacuole;1.6666143374778e-05!GO:0008047;enzyme activator activity;1.69423360082313e-05!GO:0051187;cofactor catabolic process;2.06343883751001e-05!GO:0005789;endoplasmic reticulum membrane;2.08676348872266e-05!GO:0008654;phospholipid biosynthetic process;2.18390805277644e-05!GO:0005096;GTPase activator activity;2.26793452821724e-05!GO:0007399;nervous system development;2.4503458412735e-05!GO:0005798;Golgi-associated vesicle;3.13086927012255e-05!GO:0008017;microtubule binding;3.22177282102618e-05!GO:0046467;membrane lipid biosynthetic process;3.5015834308197e-05!GO:0030120;vesicle coat;3.811407477769e-05!GO:0030662;coated vesicle membrane;3.811407477769e-05!GO:0007242;intracellular signaling cascade;4.14296948043198e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.16058820547248e-05!GO:0015399;primary active transmembrane transporter activity;4.16058820547248e-05!GO:0022890;inorganic cation transmembrane transporter activity;4.38371752488521e-05!GO:0017038;protein import;4.94250071859733e-05!GO:0051246;regulation of protein metabolic process;4.94250071859733e-05!GO:0009056;catabolic process;5.02326989250248e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.00865054362121e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.20270398690106e-05!GO:0048523;negative regulation of cellular process;6.58016162650356e-05!GO:0006613;cotranslational protein targeting to membrane;6.80780386444327e-05!GO:0005793;ER-Golgi intermediate compartment;6.99480766032266e-05!GO:0051056;regulation of small GTPase mediated signal transduction;7.65971749394463e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.91454392072998e-05!GO:0016126;sterol biosynthetic process;9.17947261816366e-05!GO:0030133;transport vesicle;0.000102594606138997!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000105964459822664!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000127436061687798!GO:0006650;glycerophospholipid metabolic process;0.000139357284480746!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000149299602371209!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000156494743311525!GO:0016197;endosome transport;0.000158005906022067!GO:0044453;nuclear membrane part;0.000163649647878631!GO:0000323;lytic vacuole;0.000183585295480271!GO:0005764;lysosome;0.000183585295480271!GO:0006643;membrane lipid metabolic process;0.000184816721847721!GO:0051188;cofactor biosynthetic process;0.000193389149622185!GO:0006752;group transfer coenzyme metabolic process;0.000197632436837562!GO:0006403;RNA localization;0.000200104346872852!GO:0050657;nucleic acid transport;0.000219328121823146!GO:0051236;establishment of RNA localization;0.000219328121823146!GO:0050658;RNA transport;0.000219328121823146!GO:0030118;clathrin coat;0.000223714691482422!GO:0008610;lipid biosynthetic process;0.00024150443251601!GO:0031072;heat shock protein binding;0.00024584402482882!GO:0005643;nuclear pore;0.00025442277990242!GO:0032446;protein modification by small protein conjugation;0.000273071501063321!GO:0015980;energy derivation by oxidation of organic compounds;0.000295127981594733!GO:0048489;synaptic vesicle transport;0.000325320356335384!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000339513630407335!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000346503361754485!GO:0006892;post-Golgi vesicle-mediated transport;0.000360141655682436!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000391568021259714!GO:0030027;lamellipodium;0.000405562592388523!GO:0000245;spliceosome assembly;0.000441723697063117!GO:0030425;dendrite;0.000446590638655483!GO:0016567;protein ubiquitination;0.000497758755774234!GO:0005938;cell cortex;0.00050073514146202!GO:0003712;transcription cofactor activity;0.000505960726529239!GO:0000151;ubiquitin ligase complex;0.000508458196161273!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000509896947472319!GO:0004812;aminoacyl-tRNA ligase activity;0.000509896947472319!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000509896947472319!GO:0005085;guanyl-nucleotide exchange factor activity;0.000539743337634539!GO:0005741;mitochondrial outer membrane;0.000557570890422481!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000614824439395003!GO:0008021;synaptic vesicle;0.000639988646077753!GO:0043038;amino acid activation;0.000653344313632813!GO:0006418;tRNA aminoacylation for protein translation;0.000653344313632813!GO:0043039;tRNA aminoacylation;0.000653344313632813!GO:0008026;ATP-dependent helicase activity;0.000670889235625801!GO:0048519;negative regulation of biological process;0.000670889235625801!GO:0003729;mRNA binding;0.000687689291471707!GO:0019867;outer membrane;0.000689167804106284!GO:0031968;organelle outer membrane;0.000695603572387914!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000696781815532224!GO:0051087;chaperone binding;0.000713045253384984!GO:0000159;protein phosphatase type 2A complex;0.000800532191935073!GO:0008601;protein phosphatase type 2A regulator activity;0.000823441976751049!GO:0030384;phosphoinositide metabolic process;0.000856239639225312!GO:0031901;early endosome membrane;0.000856632109808351!GO:0000902;cell morphogenesis;0.000863587576565257!GO:0032989;cellular structure morphogenesis;0.000863587576565257!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000874293037852234!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000882776360649043!GO:0004386;helicase activity;0.000924176337998281!GO:0022406;membrane docking;0.000948811347418852!GO:0048278;vesicle docking;0.000948811347418852!GO:0045786;negative regulation of progression through cell cycle;0.000950800537362595!GO:0008154;actin polymerization and/or depolymerization;0.00103899629249576!GO:0046578;regulation of Ras protein signal transduction;0.00109773743710137!GO:0016050;vesicle organization and biogenesis;0.0011458048612655!GO:0007019;microtubule depolymerization;0.00118694067064996!GO:0006904;vesicle docking during exocytosis;0.00119032151751924!GO:0006612;protein targeting to membrane;0.00121404553613773!GO:0009108;coenzyme biosynthetic process;0.00123714272762158!GO:0006695;cholesterol biosynthetic process;0.00123714272762158!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00133906173985956!GO:0030427;site of polarized growth;0.00142002339605146!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00143132999615185!GO:0030426;growth cone;0.00143774322097215!GO:0043566;structure-specific DNA binding;0.00151358420795954!GO:0003724;RNA helicase activity;0.00160545401923599!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00163925641379624!GO:0016568;chromatin modification;0.00174069828684081!GO:0005839;proteasome core complex (sensu Eukaryota);0.00176718976443791!GO:0006607;NLS-bearing substrate import into nucleus;0.00177545007127835!GO:0043623;cellular protein complex assembly;0.00178669580396323!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00196437154603214!GO:0006606;protein import into nucleus;0.00197065834975711!GO:0051170;nuclear import;0.00199653579698266!GO:0009966;regulation of signal transduction;0.00201211116119631!GO:0043069;negative regulation of programmed cell death;0.00202244625797233!GO:0019902;phosphatase binding;0.00208064624554871!GO:0031902;late endosome membrane;0.00208064624554871!GO:0009117;nucleotide metabolic process;0.00210295352823095!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00210499610182159!GO:0043209;myelin sheath;0.00210499610182159!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021780055318962!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021780055318962!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021780055318962!GO:0012501;programmed cell death;0.00230174215351466!GO:0016791;phosphoric monoester hydrolase activity;0.00233609682255336!GO:0006915;apoptosis;0.00239767350342047!GO:0043066;negative regulation of apoptosis;0.00239999143661743!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0024308947157536!GO:0048487;beta-tubulin binding;0.00251701361517966!GO:0051261;protein depolymerization;0.0025517027959466!GO:0005875;microtubule associated complex;0.0025612318706977!GO:0019208;phosphatase regulator activity;0.00256368437361251!GO:0051028;mRNA transport;0.00258638916289587!GO:0046474;glycerophospholipid biosynthetic process;0.00259839751527591!GO:0008219;cell death;0.00281397044979556!GO:0016265;death;0.00281397044979556!GO:0001726;ruffle;0.00284522652725509!GO:0044448;cell cortex part;0.00293514901347347!GO:0006891;intra-Golgi vesicle-mediated transport;0.00303751400145895!GO:0005813;centrosome;0.00308260700856973!GO:0004721;phosphoprotein phosphatase activity;0.0032455744469955!GO:0005869;dynactin complex;0.00349057818212679!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00368685678518518!GO:0007272;ensheathment of neurons;0.00374942244001046!GO:0008366;axon ensheathment;0.00374942244001046!GO:0006916;anti-apoptosis;0.00374942244001046!GO:0031114;regulation of microtubule depolymerization;0.00375940358409061!GO:0007026;negative regulation of microtubule depolymerization;0.00375940358409061!GO:0005791;rough endoplasmic reticulum;0.00383788964918936!GO:0016311;dephosphorylation;0.00412001422236819!GO:0005774;vacuolar membrane;0.00416053362402258!GO:0046488;phosphatidylinositol metabolic process;0.00416053362402258!GO:0001508;regulation of action potential;0.00422338022880763!GO:0043087;regulation of GTPase activity;0.00424386433487145!GO:0005099;Ras GTPase activator activity;0.00424386433487145!GO:0048500;signal recognition particle;0.00430286829013567!GO:0007266;Rho protein signal transduction;0.00436441386648246!GO:0007017;microtubule-based process;0.00445454790471166!GO:0051427;hormone receptor binding;0.00449695662911894!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00452163627259569!GO:0003697;single-stranded DNA binding;0.00455569294754527!GO:0006665;sphingolipid metabolic process;0.00462490997637808!GO:0043021;ribonucleoprotein binding;0.00462885133397296!GO:0006644;phospholipid metabolic process;0.00484697012377753!GO:0030258;lipid modification;0.00497302957603207!GO:0065002;intracellular protein transport across a membrane;0.00498100127775074!GO:0030867;rough endoplasmic reticulum membrane;0.0049914568292125!GO:0050811;GABA receptor binding;0.00507211405095878!GO:0016564;transcription repressor activity;0.00524804177866877!GO:0051920;peroxiredoxin activity;0.00527368228582926!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0004667;prostaglandin-D synthase activity;0.00536462051671617!GO:0050802;circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0022410;circadian sleep/wake cycle process;0.00536462051671617!GO:0042749;regulation of circadian sleep/wake cycle;0.00536462051671617!GO:0050767;regulation of neurogenesis;0.00549382586991492!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00611318379495179!GO:0005815;microtubule organizing center;0.00611318379495179!GO:0006414;translational elongation;0.00662426754762513!GO:0004298;threonine endopeptidase activity;0.00678832372611287!GO:0006259;DNA metabolic process;0.00678832372611287!GO:0051287;NAD binding;0.00752973050793286!GO:0012506;vesicle membrane;0.00771527442818673!GO:0030742;GTP-dependent protein binding;0.00774068259449085!GO:0004722;protein serine/threonine phosphatase activity;0.00785084381411088!GO:0019888;protein phosphatase regulator activity;0.00789209065187492!GO:0035257;nuclear hormone receptor binding;0.00789702430306608!GO:0003714;transcription corepressor activity;0.00789702430306608!GO:0008180;signalosome;0.00799014857247449!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00809312576412147!GO:0000314;organellar small ribosomal subunit;0.00827290650104205!GO:0005763;mitochondrial small ribosomal subunit;0.00827290650104205!GO:0051168;nuclear export;0.00873685487002796!GO:0006470;protein amino acid dephosphorylation;0.00895779829748984!GO:0003746;translation elongation factor activity;0.009168680274428!GO:0046489;phosphoinositide biosynthetic process;0.00917294475804751!GO:0051540;metal cluster binding;0.0092301761026649!GO:0051536;iron-sulfur cluster binding;0.0092301761026649!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0092301761026649!GO:0016740;transferase activity;0.00931457176993322!GO:0019887;protein kinase regulator activity;0.00945720020144344!GO:0030132;clathrin coat of coated pit;0.00961183147003998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00985662494360342!GO:0045047;protein targeting to ER;0.00985662494360342!GO:0035035;histone acetyltransferase binding;0.0101120058096382!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0104163568287712!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0104382236315044!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0104382236315044!GO:0015629;actin cytoskeleton;0.0104382236315044!GO:0006323;DNA packaging;0.0110344236126211!GO:0016301;kinase activity;0.011409395769311!GO:0030137;COPI-coated vesicle;0.0114648791156611!GO:0044433;cytoplasmic vesicle part;0.0115220582687841!GO:0006672;ceramide metabolic process;0.0117471069243262!GO:0030658;transport vesicle membrane;0.011789107876547!GO:0006402;mRNA catabolic process;0.0118577780165188!GO:0005048;signal sequence binding;0.0119602741411348!GO:0046519;sphingoid metabolic process;0.0119602741411348!GO:0005765;lysosomal membrane;0.0122124300056975!GO:0008186;RNA-dependent ATPase activity;0.0124286398995778!GO:0007049;cell cycle;0.0124343186970197!GO:0006399;tRNA metabolic process;0.0126514266060624!GO:0008361;regulation of cell size;0.0128537117963468!GO:0030041;actin filament polymerization;0.0133288167391454!GO:0007034;vacuolar transport;0.0133898381054642!GO:0030660;Golgi-associated vesicle membrane;0.0135010642088916!GO:0045055;regulated secretory pathway;0.0136332646470776!GO:0016070;RNA metabolic process;0.0136332646470776!GO:0044255;cellular lipid metabolic process;0.0139406577763061!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055083;monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055064;chloride ion homeostasis;0.0140795595936804!GO:0030644;cellular chloride ion homeostasis;0.0140795595936804!GO:0046930;pore complex;0.0142333286557509!GO:0031124;mRNA 3'-end processing;0.0143674598462512!GO:0006661;phosphatidylinositol biosynthetic process;0.0150327843382377!GO:0042254;ribosome biogenesis and assembly;0.0151096667608397!GO:0033673;negative regulation of kinase activity;0.0151740485010992!GO:0006469;negative regulation of protein kinase activity;0.0151740485010992!GO:0001505;regulation of neurotransmitter levels;0.0153940520931232!GO:0044437;vacuolar part;0.0154981299886616!GO:0035258;steroid hormone receptor binding;0.0158688322725815!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0159232769232513!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159232769232513!GO:0033043;regulation of organelle organization and biogenesis;0.0159232769232513!GO:0016408;C-acyltransferase activity;0.0159564664762431!GO:0030119;AP-type membrane coat adaptor complex;0.0166548071976076!GO:0016363;nuclear matrix;0.0168856935403546!GO:0000287;magnesium ion binding;0.0170712737225849!GO:0030532;small nuclear ribonucleoprotein complex;0.0176175674044129!GO:0006818;hydrogen transport;0.0176705991994178!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0178868795872213!GO:0000059;protein import into nucleus, docking;0.0178868795872213!GO:0009165;nucleotide biosynthetic process;0.0179235014685155!GO:0005100;Rho GTPase activator activity;0.0184004326633893!GO:0048167;regulation of synaptic plasticity;0.0184494695071031!GO:0008312;7S RNA binding;0.0187559100267538!GO:0030424;axon;0.0187841453970721!GO:0046839;phospholipid dephosphorylation;0.0188467380389491!GO:0005885;Arp2/3 protein complex;0.019115650463817!GO:0043681;protein import into mitochondrion;0.0192577601960679!GO:0008250;oligosaccharyl transferase complex;0.0194637935587752!GO:0032011;ARF protein signal transduction;0.0194668940578174!GO:0032012;regulation of ARF protein signal transduction;0.0194668940578174!GO:0019903;protein phosphatase binding;0.0198242822967505!GO:0009892;negative regulation of metabolic process;0.0201068883665867!GO:0031109;microtubule polymerization or depolymerization;0.0202080681497832!GO:0008090;retrograde axon cargo transport;0.02043378713715!GO:0033596;TSC1-TSC2 complex;0.02043378713715!GO:0033693;neurofilament bundle assembly;0.02043378713715!GO:0007269;neurotransmitter secretion;0.0208670637721512!GO:0005868;cytoplasmic dynein complex;0.0208670637721512!GO:0019894;kinesin binding;0.0210271615135573!GO:0042802;identical protein binding;0.0213073286365905!GO:0009066;aspartate family amino acid metabolic process;0.0213703764806037!GO:0030131;clathrin adaptor complex;0.022309614423129!GO:0008139;nuclear localization sequence binding;0.022345059910415!GO:0051539;4 iron, 4 sulfur cluster binding;0.0223562289574619!GO:0042026;protein refolding;0.0229493524056242!GO:0005092;GDP-dissociation inhibitor activity;0.0230126941476488!GO:0016049;cell growth;0.0230223036082102!GO:0051348;negative regulation of transferase activity;0.023134895610333!GO:0016859;cis-trans isomerase activity;0.0231383604924039!GO:0019904;protein domain specific binding;0.0235254256338829!GO:0007005;mitochondrion organization and biogenesis;0.0235993699504395!GO:0015992;proton transport;0.0236807512600188!GO:0019783;small conjugating protein-specific protease activity;0.0237292207702999!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0237292207702999!GO:0051726;regulation of cell cycle;0.0278629339932822!GO:0004843;ubiquitin-specific protease activity;0.028322308097916!GO:0005545;phosphatidylinositol binding;0.0285753687006674!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0286907180409049!GO:0000062;acyl-CoA binding;0.0287268367572412!GO:0004004;ATP-dependent RNA helicase activity;0.0289044575243517!GO:0000209;protein polyubiquitination;0.0291812307016711!GO:0030659;cytoplasmic vesicle membrane;0.0294900269027229!GO:0005762;mitochondrial large ribosomal subunit;0.0296831045677357!GO:0000315;organellar large ribosomal subunit;0.0296831045677357!GO:0019226;transmission of nerve impulse;0.0299053874858943!GO:0030663;COPI coated vesicle membrane;0.029940670377388!GO:0030126;COPI vesicle coat;0.029940670377388!GO:0043284;biopolymer biosynthetic process;0.0299688365015773!GO:0051789;response to protein stimulus;0.0304272738412699!GO:0006986;response to unfolded protein;0.0304272738412699!GO:0042578;phosphoric ester hydrolase activity;0.0306003051484951!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0313426203305387!GO:0019198;transmembrane receptor protein phosphatase activity;0.0313426203305387!GO:0050839;cell adhesion molecule binding;0.0322189668470383!GO:0043086;negative regulation of catalytic activity;0.0323088092852449!GO:0050803;regulation of synapse structure and activity;0.0325154676048501!GO:0019207;kinase regulator activity;0.0325154676048501!GO:0003690;double-stranded DNA binding;0.0326098554945019!GO:0042552;myelination;0.0326209000987021!GO:0031371;ubiquitin conjugating enzyme complex;0.0332789244882556!GO:0030125;clathrin vesicle coat;0.0334334168269267!GO:0030665;clathrin coated vesicle membrane;0.0334334168269267!GO:0006887;exocytosis;0.0335441840614921!GO:0007041;lysosomal transport;0.0342265399816202!GO:0032535;regulation of cellular component size;0.0342265399816202!GO:0016579;protein deubiquitination;0.0342265399816202!GO:0019911;structural constituent of myelin sheath;0.0342265399816202!GO:0007006;mitochondrial membrane organization and biogenesis;0.0342265399816202!GO:0004221;ubiquitin thiolesterase activity;0.0342265399816202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0342265399816202!GO:0050435;beta-amyloid metabolic process;0.034800359090118!GO:0000074;regulation of progression through cell cycle;0.0350638624413977!GO:0033116;ER-Golgi intermediate compartment membrane;0.0350638624413977!GO:0003711;transcription elongation regulator activity;0.0356399856685962!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0357001565435625!GO:0003725;double-stranded RNA binding;0.0358096949187284!GO:0004674;protein serine/threonine kinase activity;0.0361510343074738!GO:0008286;insulin receptor signaling pathway;0.0366950137617163!GO:0003713;transcription coactivator activity;0.036717728996261!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0368136983915019!GO:0004576;oligosaccharyl transferase activity;0.0371050796586291!GO:0001578;microtubule bundle formation;0.0372295263611933!GO:0015682;ferric iron transport;0.0373137908139239!GO:0015091;ferric iron transmembrane transporter activity;0.0373137908139239!GO:0031643;positive regulation of myelination;0.0373137908139239!GO:0006091;generation of precursor metabolites and energy;0.03781454670329!GO:0042158;lipoprotein biosynthetic process;0.0379954546151621!GO:0007030;Golgi organization and biogenesis;0.0383543695358582!GO:0006366;transcription from RNA polymerase II promoter;0.0385126740108752!GO:0006383;transcription from RNA polymerase III promoter;0.038602366952758!GO:0006633;fatty acid biosynthetic process;0.0386935467148123!GO:0006376;mRNA splice site selection;0.0387624746892384!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0387624746892384!GO:0006595;polyamine metabolic process;0.0390015729802808!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0392566600885449!GO:0005516;calmodulin binding;0.0411883845686246!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0412498967493029!GO:0006611;protein export from nucleus;0.0420670922110891!GO:0048468;cell development;0.0421142384995738!GO:0016615;malate dehydrogenase activity;0.0425406918060332!GO:0031628;opioid receptor binding;0.0425406918060332!GO:0031852;mu-type opioid receptor binding;0.0425406918060332!GO:0008088;axon cargo transport;0.0432079977585544!GO:0019201;nucleotide kinase activity;0.0433725987453809!GO:0030832;regulation of actin filament length;0.0437582343917716!GO:0005832;chaperonin-containing T-complex;0.0439405122808274!GO:0000096;sulfur amino acid metabolic process;0.0440480585941645!GO:0031123;RNA 3'-end processing;0.0462901861697529!GO:0044262;cellular carbohydrate metabolic process;0.0470902585997469!GO:0006629;lipid metabolic process;0.0475835267638942!GO:0006497;protein amino acid lipidation;0.0484369358201998!GO:0007243;protein kinase cascade;0.0495395448932079 | |||
|sample_id=10033 | |sample_id=10033 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=pons | |sample_tissue=pons | ||
|top_motifs=REST:4.12486325054;NHLH1,2:3.9933663035;ZFP161:3.34527032038;MYFfamily:3.20191944663;ATF2:3.10298241294;ZBTB6:3.07161878191;SOX5:2.96750654629;SOX2:2.94147323511;HIC1:2.81833196691;MED-1{core}:2.75993832686;LMO2:2.70460059676;MTE{core}:2.69857076748;MTF1:2.67513986259;SOX{8,9,10}:2.63528600498;NFIX:2.628509455;PAX5:2.58838574184;GCM1,2:2.52461376993;PRRX1,2:2.49631715155;JUN:2.4721548935;TFAP2B:2.46611345975;CUX2:2.46558633334;EGR1..3:2.41746152516;RREB1:2.41667122498;NKX3-2:2.3889868262;TGIF1:2.36879542494;SOX17:2.32684252733;GTF2I:2.28523076036;GATA4:2.21229011583;FOXM1:2.18797053688;NANOG:2.18150766395;PATZ1:2.17114879114;GFI1B:2.13575198711;XBP1:2.1336836547;PRDM1:2.11989567654;SMAD1..7,9:2.07648217162;RFX1:2.01994436825;MZF1:1.96274693808;AHR_ARNT_ARNT2:1.94066896308;EBF1:1.91031923191;LEF1_TCF7_TCF7L1,2:1.89105531392;NRF1:1.87187283709;KLF4:1.82288286554;BREu{core}:1.81316940538;MAZ:1.76527616483;EP300:1.71012778281;DBP:1.63216969506;HBP1_HMGB_SSRP1_UBTF:1.6018238729;SP1:1.59330824969;SREBF1,2:1.57057195006;HOXA9_MEIS1:1.56307485046;RBPJ:1.54117233978;TFDP1:1.48378554448;ARID5B:1.45817488176;MAFB:1.4494095597;POU6F1:1.44216098652;RFX2..5_RFXANK_RFXAP:1.44085496488;NKX2-3_NKX2-5:1.41079937748;FOX{I1,J2}:1.3777680262;FOXP3:1.36760376694;ESRRA:1.34508797378;POU5F1:1.33779060348;PAX6:1.27102592341;PDX1:1.24124886888;OCT4_SOX2{dimer}:1.23853540355;STAT1,3:1.23531235946;RORA:1.18228832842;CDC5L:1.1130088253;FOX{F1,F2,J1}:1.10518115827;ZNF143:1.0614333611;FOX{D1,D2}:0.995841687824;HOX{A4,D4}:0.987650453457;MYBL2:0.960832740106;FOXQ1:0.916933554628;CREB1:0.911618376485;TFAP2{A,C}:0.896611223606;ZNF423:0.866219022383;HMGA1,2:0.82812415683;MYOD1:0.803251045758;BPTF:0.799399896213;TLX1..3_NFIC{dimer}:0.779042363786;NFIL3:0.778920631341;FOXN1:0.727170110979;ZIC1..3:0.707989447207;SPZ1:0.698551137148;YY1:0.663804512067;XCPE1{core}:0.635240460004;ZEB1:0.61722643132;FOXA2:0.609890853152;GTF2A1,2:0.606652264639;NR3C1:0.582202798731;ADNP_IRX_SIX_ZHX:0.579790129892;HMX1:0.578244292968;ZNF384:0.551512060742;ONECUT1,2:0.548493194127;CRX:0.510421308792;AR:0.508770581327;NFY{A,B,C}:0.500777496497;ZNF238:0.49073848002;NR5A1,2:0.479381068045;MEF2{A,B,C,D}:0.451209759353;TLX2:0.447633636269;FOXO1,3,4:0.439705982879;GFI1:0.413430677395;ATF5_CREB3:0.37890628908;IRF7:0.377233946587;POU3F1..4:0.359447443087;GZF1:0.337416203024;FOXP1:0.297893908629;NFE2L2:0.26760184811;ATF4:0.154750361815;HAND1,2:0.146951547475;NKX6-1,2:0.135320721965;PAX2:0.121992337608;VSX1,2:0.092074633167;NFATC1..3:0.0283757844487;NR1H4:-0.0314661861875;NFE2L1:-0.033948309562;IKZF2:-0.0429674853807;T:-0.0433631737097;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0815069633666;GATA6:-0.0906592855848;TFAP4:-0.10894161344;IRF1,2:-0.111361846384;FOXD3:-0.113697409606;PAX3,7:-0.118182679023;ALX1:-0.164329710607;STAT2,4,6:-0.201248209591;HOX{A6,A7,B6,B7}:-0.223760746668;HSF1,2:-0.258425500752;TFCP2:-0.259527809773;SNAI1..3:-0.260014854499;NFE2:-0.312578509953;LHX3,4:-0.362594176384;TBX4,5:-0.368363745482;TEF:-0.404029029373;ETS1,2:-0.416738792856;PAX8:-0.436234988126;TOPORS:-0.43681893143;SPI1:-0.467965641021;POU1F1:-0.490255468176;ESR1:-0.501428837493;bHLH_family:-0.515214796301;ZNF148:-0.530213171204;PBX1:-0.53776386002;PAX4:-0.542036411505;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.547770019187;IKZF1:-0.563380195085;CEBPA,B_DDIT3:-0.574280510303;ELK1,4_GABP{A,B1}:-0.610682495837;SPIB:-0.612418937552;DMAP1_NCOR{1,2}_SMARC:-0.665218697161;HNF1A:-0.679013694786;UFEwm:-0.682450955204;NANOG{mouse}:-0.699181513103;PPARG:-0.702938882641;TP53:-0.773841761517;ATF6:-0.826016295774;ALX4:-0.843661773106;HNF4A_NR2F1,2:-0.848818474448;TAL1_TCF{3,4,12}:-0.850264141754;FOSL2:-0.860262913611;ELF1,2,4:-0.893171096037;BACH2:-0.907959245032;EVI1:-0.910772909676;TEAD1:-0.921299643815;PAX1,9:-0.925764197339;HLF:-0.967605832211;SRF:-0.96801058634;NKX3-1:-0.975679797488;FOS_FOS{B,L1}_JUN{B,D}:-1.01641078753;TBP:-1.06212674745;NFKB1_REL_RELA:-1.09256236912;RUNX1..3:-1.09606165993;FOXL1:-1.15326992355;E2F1..5:-1.15494013018;ZBTB16:-1.18231083208;HIF1A:-1.20859352484;NKX2-1,4:-1.26608731381;MYB:-1.27221221401;RXR{A,B,G}:-1.37611355183;GLI1..3:-1.51875411384;HES1:-1.52461719065;AIRE:-1.5914602296;POU2F1..3:-1.65663360107;PITX1..3:-1.68566490195;CDX1,2,4:-1.75050482477;EN1,2:-1.99162610511;RXRA_VDR{dimer}:-2.00720242936;NKX2-2,8:-2.04792626238;HOX{A5,B5}:-2.04827465569;STAT5{A,B}:-2.13934356882;NR6A1:-2.63843122458 | |top_motifs=REST:4.12486325054;NHLH1,2:3.9933663035;ZFP161:3.34527032038;MYFfamily:3.20191944663;ATF2:3.10298241294;ZBTB6:3.07161878191;SOX5:2.96750654629;SOX2:2.94147323511;HIC1:2.81833196691;MED-1{core}:2.75993832686;LMO2:2.70460059676;MTE{core}:2.69857076748;MTF1:2.67513986259;SOX{8,9,10}:2.63528600498;NFIX:2.628509455;PAX5:2.58838574184;GCM1,2:2.52461376993;PRRX1,2:2.49631715155;JUN:2.4721548935;TFAP2B:2.46611345975;CUX2:2.46558633334;EGR1..3:2.41746152516;RREB1:2.41667122498;NKX3-2:2.3889868262;TGIF1:2.36879542494;SOX17:2.32684252733;GTF2I:2.28523076036;GATA4:2.21229011583;FOXM1:2.18797053688;NANOG:2.18150766395;PATZ1:2.17114879114;GFI1B:2.13575198711;XBP1:2.1336836547;PRDM1:2.11989567654;SMAD1..7,9:2.07648217162;RFX1:2.01994436825;MZF1:1.96274693808;AHR_ARNT_ARNT2:1.94066896308;EBF1:1.91031923191;LEF1_TCF7_TCF7L1,2:1.89105531392;NRF1:1.87187283709;KLF4:1.82288286554;BREu{core}:1.81316940538;MAZ:1.76527616483;EP300:1.71012778281;DBP:1.63216969506;HBP1_HMGB_SSRP1_UBTF:1.6018238729;SP1:1.59330824969;SREBF1,2:1.57057195006;HOXA9_MEIS1:1.56307485046;RBPJ:1.54117233978;TFDP1:1.48378554448;ARID5B:1.45817488176;MAFB:1.4494095597;POU6F1:1.44216098652;RFX2..5_RFXANK_RFXAP:1.44085496488;NKX2-3_NKX2-5:1.41079937748;FOX{I1,J2}:1.3777680262;FOXP3:1.36760376694;ESRRA:1.34508797378;POU5F1:1.33779060348;PAX6:1.27102592341;PDX1:1.24124886888;OCT4_SOX2{dimer}:1.23853540355;STAT1,3:1.23531235946;RORA:1.18228832842;CDC5L:1.1130088253;FOX{F1,F2,J1}:1.10518115827;ZNF143:1.0614333611;FOX{D1,D2}:0.995841687824;HOX{A4,D4}:0.987650453457;MYBL2:0.960832740106;FOXQ1:0.916933554628;CREB1:0.911618376485;TFAP2{A,C}:0.896611223606;ZNF423:0.866219022383;HMGA1,2:0.82812415683;MYOD1:0.803251045758;BPTF:0.799399896213;TLX1..3_NFIC{dimer}:0.779042363786;NFIL3:0.778920631341;FOXN1:0.727170110979;ZIC1..3:0.707989447207;SPZ1:0.698551137148;YY1:0.663804512067;XCPE1{core}:0.635240460004;ZEB1:0.61722643132;FOXA2:0.609890853152;GTF2A1,2:0.606652264639;NR3C1:0.582202798731;ADNP_IRX_SIX_ZHX:0.579790129892;HMX1:0.578244292968;ZNF384:0.551512060742;ONECUT1,2:0.548493194127;CRX:0.510421308792;AR:0.508770581327;NFY{A,B,C}:0.500777496497;ZNF238:0.49073848002;NR5A1,2:0.479381068045;MEF2{A,B,C,D}:0.451209759353;TLX2:0.447633636269;FOXO1,3,4:0.439705982879;GFI1:0.413430677395;ATF5_CREB3:0.37890628908;IRF7:0.377233946587;POU3F1..4:0.359447443087;GZF1:0.337416203024;FOXP1:0.297893908629;NFE2L2:0.26760184811;ATF4:0.154750361815;HAND1,2:0.146951547475;NKX6-1,2:0.135320721965;PAX2:0.121992337608;VSX1,2:0.092074633167;NFATC1..3:0.0283757844487;NR1H4:-0.0314661861875;NFE2L1:-0.033948309562;IKZF2:-0.0429674853807;T:-0.0433631737097;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0815069633666;GATA6:-0.0906592855848;TFAP4:-0.10894161344;IRF1,2:-0.111361846384;FOXD3:-0.113697409606;PAX3,7:-0.118182679023;ALX1:-0.164329710607;STAT2,4,6:-0.201248209591;HOX{A6,A7,B6,B7}:-0.223760746668;HSF1,2:-0.258425500752;TFCP2:-0.259527809773;SNAI1..3:-0.260014854499;NFE2:-0.312578509953;LHX3,4:-0.362594176384;TBX4,5:-0.368363745482;TEF:-0.404029029373;ETS1,2:-0.416738792856;PAX8:-0.436234988126;TOPORS:-0.43681893143;SPI1:-0.467965641021;POU1F1:-0.490255468176;ESR1:-0.501428837493;bHLH_family:-0.515214796301;ZNF148:-0.530213171204;PBX1:-0.53776386002;PAX4:-0.542036411505;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.547770019187;IKZF1:-0.563380195085;CEBPA,B_DDIT3:-0.574280510303;ELK1,4_GABP{A,B1}:-0.610682495837;SPIB:-0.612418937552;DMAP1_NCOR{1,2}_SMARC:-0.665218697161;HNF1A:-0.679013694786;UFEwm:-0.682450955204;NANOG{mouse}:-0.699181513103;PPARG:-0.702938882641;TP53:-0.773841761517;ATF6:-0.826016295774;ALX4:-0.843661773106;HNF4A_NR2F1,2:-0.848818474448;TAL1_TCF{3,4,12}:-0.850264141754;FOSL2:-0.860262913611;ELF1,2,4:-0.893171096037;BACH2:-0.907959245032;EVI1:-0.910772909676;TEAD1:-0.921299643815;PAX1,9:-0.925764197339;HLF:-0.967605832211;SRF:-0.96801058634;NKX3-1:-0.975679797488;FOS_FOS{B,L1}_JUN{B,D}:-1.01641078753;TBP:-1.06212674745;NFKB1_REL_RELA:-1.09256236912;RUNX1..3:-1.09606165993;FOXL1:-1.15326992355;E2F1..5:-1.15494013018;ZBTB16:-1.18231083208;HIF1A:-1.20859352484;NKX2-1,4:-1.26608731381;MYB:-1.27221221401;RXR{A,B,G}:-1.37611355183;GLI1..3:-1.51875411384;HES1:-1.52461719065;AIRE:-1.5914602296;POU2F1..3:-1.65663360107;PITX1..3:-1.68566490195;CDX1,2,4:-1.75050482477;EN1,2:-1.99162610511;RXRA_VDR{dimer}:-2.00720242936;NKX2-2,8:-2.04792626238;HOX{A5,B5}:-2.04827465569;STAT5{A,B}:-2.13934356882;NR6A1:-2.63843122458 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10033-101E6;search_select_hide=table117:FF:10033-101E6 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | pons, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10640 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10640
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10640
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0385 |
| 10 | 10 | 0.0261 |
| 100 | 100 | 0.235 |
| 101 | 101 | 0.876 |
| 102 | 102 | 0.805 |
| 103 | 103 | 0.262 |
| 104 | 104 | 0.126 |
| 105 | 105 | 0.246 |
| 106 | 106 | 0.0292 |
| 107 | 107 | 0.0964 |
| 108 | 108 | 0.857 |
| 109 | 109 | 0.0152 |
| 11 | 11 | 0.0158 |
| 110 | 110 | 0.028 |
| 111 | 111 | 0.143 |
| 112 | 112 | 0.368 |
| 113 | 113 | 0.697 |
| 114 | 114 | 0.111 |
| 115 | 115 | 0.92 |
| 116 | 116 | 0.174 |
| 117 | 117 | 0.00803 |
| 118 | 118 | 0.12 |
| 119 | 119 | 0.156 |
| 12 | 12 | 0.745 |
| 120 | 120 | 0.12 |
| 121 | 121 | 0.986 |
| 122 | 122 | 0.579 |
| 123 | 123 | 0.627 |
| 124 | 124 | 0.022 |
| 125 | 125 | 0.237 |
| 126 | 126 | 0.0652 |
| 127 | 127 | 0.577 |
| 128 | 128 | 0.187 |
| 129 | 129 | 0.522 |
| 13 | 13 | 0.00134 |
| 130 | 130 | 0.624 |
| 131 | 131 | 0.0547 |
| 132 | 132 | 0.795 |
| 133 | 133 | 0.00546 |
| 134 | 134 | 0.261 |
| 135 | 135 | 0.0908 |
| 136 | 136 | 0.025 |
| 137 | 137 | 0.75 |
| 138 | 138 | 0.807 |
| 139 | 139 | 0.0669 |
| 14 | 14 | 0.973 |
| 140 | 140 | 0.181 |
| 141 | 141 | 0.316 |
| 142 | 142 | 0.877 |
| 143 | 143 | 0.0303 |
| 144 | 144 | 0.928 |
| 145 | 145 | 0.0595 |
| 146 | 146 | 0.663 |
| 147 | 147 | 0.783 |
| 148 | 148 | 0.155 |
| 149 | 149 | 0.253 |
| 15 | 15 | 0.0618 |
| 150 | 150 | 0.142 |
| 151 | 151 | 0.761 |
| 152 | 152 | 0.191 |
| 153 | 153 | 0.804 |
| 154 | 154 | 0.647 |
| 155 | 155 | 0.401 |
| 156 | 156 | 0.439 |
| 157 | 157 | 0.393 |
| 158 | 158 | 0.358 |
| 159 | 159 | 0.00743 |
| 16 | 16 | 0.0662 |
| 160 | 160 | 0.162 |
| 161 | 161 | 0.283 |
| 162 | 162 | 0.84 |
| 163 | 163 | 0.973 |
| 164 | 164 | 0.0083 |
| 165 | 165 | 0.221 |
| 166 | 166 | 0.853 |
| 167 | 167 | 0.357 |
| 168 | 168 | 0.667 |
| 169 | 169 | 0.0129 |
| 17 | 17 | 0.101 |
| 18 | 18 | 0.153 |
| 19 | 19 | 0.27 |
| 2 | 2 | 0.966 |
| 20 | 20 | 0.0722 |
| 21 | 21 | 0.0636 |
| 22 | 22 | 0.326 |
| 23 | 23 | 0.43 |
| 24 | 24 | 0.107 |
| 25 | 25 | 0.561 |
| 26 | 26 | 6.66356e-6 |
| 27 | 27 | 0.935 |
| 28 | 28 | 0.831 |
| 29 | 29 | 0.0122 |
| 3 | 3 | 0.045 |
| 30 | 30 | 0.63 |
| 31 | 31 | 0.909 |
| 32 | 32 | 0.0168 |
| 33 | 33 | 0.0822 |
| 34 | 34 | 0.761 |
| 35 | 35 | 0.425 |
| 36 | 36 | 0.0996 |
| 37 | 37 | 0.0583 |
| 38 | 38 | 0.379 |
| 39 | 39 | 0.222 |
| 4 | 4 | 0.96 |
| 40 | 40 | 0.0581 |
| 41 | 41 | 0.323 |
| 42 | 42 | 0.245 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.087 |
| 45 | 45 | 0.798 |
| 46 | 46 | 0.0303 |
| 47 | 47 | 0.0767 |
| 48 | 48 | 0.0605 |
| 49 | 49 | 0.156 |
| 5 | 5 | 0.645 |
| 50 | 50 | 0.353 |
| 51 | 51 | 0.464 |
| 52 | 52 | 0.667 |
| 53 | 53 | 0.963 |
| 54 | 54 | 0.503 |
| 55 | 55 | 0.344 |
| 56 | 56 | 0.541 |
| 57 | 57 | 0.233 |
| 58 | 58 | 0.361 |
| 59 | 59 | 0.102 |
| 6 | 6 | 0.798 |
| 60 | 60 | 0.0763 |
| 61 | 61 | 0.08 |
| 62 | 62 | 0.18 |
| 63 | 63 | 0.153 |
| 64 | 64 | 0.185 |
| 65 | 65 | 0.306 |
| 66 | 66 | 0.326 |
| 67 | 67 | 0.505 |
| 68 | 68 | 0.333 |
| 69 | 69 | 0.461 |
| 7 | 7 | 0.0648 |
| 70 | 70 | 0.012 |
| 71 | 71 | 0.00547 |
| 72 | 72 | 0.467 |
| 73 | 73 | 0.0775 |
| 74 | 74 | 0.734 |
| 75 | 75 | 0.0265 |
| 76 | 76 | 0.271 |
| 77 | 77 | 0.218 |
| 78 | 78 | 0.00303 |
| 79 | 79 | 0.192 |
| 8 | 8 | 0.0383 |
| 80 | 80 | 0.79 |
| 81 | 81 | 0.485 |
| 82 | 82 | 0.428 |
| 83 | 83 | 0.254 |
| 84 | 84 | 0.46 |
| 85 | 85 | 0.3 |
| 86 | 86 | 0.182 |
| 87 | 87 | 0.0128 |
| 88 | 88 | 0.831 |
| 89 | 89 | 0.388 |
| 9 | 9 | 0.494 |
| 90 | 90 | 0.0388 |
| 91 | 91 | 0.473 |
| 92 | 92 | 0.395 |
| 93 | 93 | 0.811 |
| 94 | 94 | 0.0426 |
| 95 | 95 | 0.0634 |
| 96 | 96 | 0.868 |
| 97 | 97 | 0.69 |
| 98 | 98 | 0.172 |
| 99 | 99 | 0.575 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10640
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010033 human pons - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010033 (human pons - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
