FF:10159-103A6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005672 | ||
|ancestors_in_cell_lineage_facet= | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005672 | ||
|HumanCAGEScanFiles=NCig10030;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008728;DRR009600;DRZ001025;DRZ002410;DRZ012375;DRZ013760 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037339;DRR041705;DRZ007347 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010159 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10159-103A6 | |id=FF:10159-103A6 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010159 | ||
|is_obsolete= | |||
|library_id=CNhs12227 | |||
|library_id_phase_based=2:CNhs12227 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10159 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GGCTAC.10159 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10159 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GGCTAC.10159 | |||
|name=spinal cord, adult, donor10252 | |name=spinal cord, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10030,,, | |profile_cagescan=NCig10030,,, | ||
|profile_hcage=CNhs12227,LSID852,release009,COMPLETED | |profile_hcage=CNhs12227,LSID852,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 83: | ||
|rna_tube_id=103A6 | |rna_tube_id=103A6 | ||
|rna_weight_ug=49.2225 | |rna_weight_ug=49.2225 | ||
|rnaseq_library_id=SRhi10003.GGCTAC | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41689137030206e-255!GO:0005737;cytoplasm;8.57476100990326e-139!GO:0043226;organelle;4.15450057197407e-119!GO:0043229;intracellular organelle;1.08019498451558e-118!GO:0043227;membrane-bound organelle;1.30553545784126e-114!GO:0043231;intracellular membrane-bound organelle;2.15305373877608e-114!GO:0044444;cytoplasmic part;3.93362926707431e-88!GO:0005515;protein binding;1.25042206905201e-72!GO:0044422;organelle part;1.02867211148721e-64!GO:0044446;intracellular organelle part;1.30629615421688e-63!GO:0032991;macromolecular complex;5.66649979983553e-53!GO:0044238;primary metabolic process;3.65570719477586e-43!GO:0016043;cellular component organization and biogenesis;5.51059080132326e-43!GO:0044237;cellular metabolic process;1.46173038019585e-41!GO:0003723;RNA binding;1.86125938382578e-41!GO:0005634;nucleus;4.19802650807585e-41!GO:0043170;macromolecule metabolic process;5.20946207799855e-40!GO:0044428;nuclear part;1.96987987869319e-38!GO:0033036;macromolecule localization;2.18865404883924e-38!GO:0030529;ribonucleoprotein complex;2.7759667961495e-38!GO:0043233;organelle lumen;1.4422928468621e-36!GO:0031974;membrane-enclosed lumen;1.4422928468621e-36!GO:0015031;protein transport;6.66835736502174e-36!GO:0008104;protein localization;1.13678766983972e-34!GO:0045184;establishment of protein localization;5.2200548052893e-34!GO:0005739;mitochondrion;1.74032660350674e-32!GO:0031090;organelle membrane;3.96721299807604e-32!GO:0016071;mRNA metabolic process;1.32775703976172e-29!GO:0046907;intracellular transport;1.37668124228088e-29!GO:0043234;protein complex;2.22574567726643e-28!GO:0006396;RNA processing;9.27324291173362e-27!GO:0019538;protein metabolic process;7.65464128504555e-26!GO:0043283;biopolymer metabolic process;9.19523267138717e-26!GO:0008380;RNA splicing;9.19523267138717e-26!GO:0031975;envelope;1.63185352685049e-24!GO:0031967;organelle envelope;2.07260972136549e-24!GO:0006397;mRNA processing;2.86521935749319e-24!GO:0031981;nuclear lumen;8.92990758636235e-24!GO:0005829;cytosol;2.53403190175911e-23!GO:0051649;establishment of cellular localization;3.58198391759074e-23!GO:0006886;intracellular protein transport;4.15457706534161e-23!GO:0044429;mitochondrial part;4.23869711739837e-23!GO:0044260;cellular macromolecule metabolic process;5.96121174900135e-23!GO:0051641;cellular localization;6.58229307953849e-23!GO:0010467;gene expression;6.62188079982411e-23!GO:0044267;cellular protein metabolic process;1.02682311583409e-21!GO:0016192;vesicle-mediated transport;1.95475897172668e-20!GO:0006996;organelle organization and biogenesis;2.26391245752339e-19!GO:0006412;translation;4.65940420701304e-19!GO:0065003;macromolecular complex assembly;1.80536466266401e-18!GO:0005681;spliceosome;1.46195276642265e-17!GO:0005840;ribosome;1.96656701335374e-17!GO:0000166;nucleotide binding;4.82111701190983e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.74795024946655e-17!GO:0005740;mitochondrial envelope;1.26236021893836e-16!GO:0005794;Golgi apparatus;1.2994567632361e-16!GO:0009058;biosynthetic process;1.50673013966913e-16!GO:0005654;nucleoplasm;3.16214750718535e-16!GO:0022607;cellular component assembly;3.16214750718535e-16!GO:0031966;mitochondrial membrane;4.54507410414499e-16!GO:0006119;oxidative phosphorylation;7.80730567497413e-16!GO:0009059;macromolecule biosynthetic process;1.49857841523151e-15!GO:0019866;organelle inner membrane;5.78078334079834e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.11262573702214e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.38702710517762e-14!GO:0016462;pyrophosphatase activity;1.40262452211199e-14!GO:0048770;pigment granule;1.40262452211199e-14!GO:0042470;melanosome;1.40262452211199e-14!GO:0008134;transcription factor binding;2.43588529650992e-14!GO:0044451;nucleoplasm part;2.83692667901587e-14!GO:0005743;mitochondrial inner membrane;6.16595660951885e-14!GO:0017111;nucleoside-triphosphatase activity;8.20029227536692e-14!GO:0003735;structural constituent of ribosome;1.37389913206429e-13!GO:0012505;endomembrane system;3.97865357910378e-13!GO:0044249;cellular biosynthetic process;4.1811475931026e-13!GO:0016874;ligase activity;4.76754826811436e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.15019454336618e-13!GO:0016070;RNA metabolic process;1.50891464723787e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.88859617005386e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.9210774400868e-12!GO:0006512;ubiquitin cycle;3.05366993450882e-12!GO:0019941;modification-dependent protein catabolic process;3.22999247505017e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.22999247505017e-12!GO:0044257;cellular protein catabolic process;4.13364354633844e-12!GO:0044265;cellular macromolecule catabolic process;4.42932857304663e-12!GO:0033279;ribosomal subunit;5.70272677062375e-12!GO:0031982;vesicle;7.13348784785998e-12!GO:0006457;protein folding;8.68846204618549e-12!GO:0032553;ribonucleotide binding;1.32994101284922e-11!GO:0032555;purine ribonucleotide binding;1.32994101284922e-11!GO:0022618;protein-RNA complex assembly;1.43785261374672e-11!GO:0030695;GTPase regulator activity;3.592586446252e-11!GO:0043412;biopolymer modification;3.61513923657339e-11!GO:0017076;purine nucleotide binding;3.6861056494508e-11!GO:0031410;cytoplasmic vesicle;3.82492595783806e-11!GO:0043228;non-membrane-bound organelle;4.02831108629651e-11!GO:0043232;intracellular non-membrane-bound organelle;4.02831108629651e-11!GO:0044455;mitochondrial membrane part;4.2203784549339e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.4039108221734e-11!GO:0050136;NADH dehydrogenase (quinone) activity;6.10237796112792e-11!GO:0003954;NADH dehydrogenase activity;6.10237796112792e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.10237796112792e-11!GO:0005768;endosome;1.05712290164961e-10!GO:0031988;membrane-bound vesicle;1.30912831781474e-10!GO:0006464;protein modification process;1.38571313999859e-10!GO:0005783;endoplasmic reticulum;1.49105043242653e-10!GO:0006605;protein targeting;1.49499418248062e-10!GO:0005746;mitochondrial respiratory chain;1.60172570882005e-10!GO:0048193;Golgi vesicle transport;1.64246730996095e-10!GO:0016604;nuclear body;1.71909166151848e-10!GO:0050794;regulation of cellular process;2.35129018844796e-10!GO:0043687;post-translational protein modification;3.04068788362609e-10!GO:0043285;biopolymer catabolic process;3.44019050876056e-10!GO:0003676;nucleic acid binding;3.56687497460278e-10!GO:0044445;cytosolic part;4.24913492760337e-10!GO:0016023;cytoplasmic membrane-bound vesicle;5.6929671734948e-10!GO:0051082;unfolded protein binding;9.39725566384958e-10!GO:0016607;nuclear speck;1.36021890362455e-09!GO:0048523;negative regulation of cellular process;1.45510571105973e-09!GO:0008092;cytoskeletal protein binding;1.48198054275363e-09!GO:0008135;translation factor activity, nucleic acid binding;1.52546376280101e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.9880929445969e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.32954886500878e-09!GO:0030964;NADH dehydrogenase complex (quinone);2.48211054810237e-09!GO:0045271;respiratory chain complex I;2.48211054810237e-09!GO:0005747;mitochondrial respiratory chain complex I;2.48211054810237e-09!GO:0050789;regulation of biological process;3.34895242912033e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.70356591210679e-09!GO:0042773;ATP synthesis coupled electron transport;3.70356591210679e-09!GO:0044248;cellular catabolic process;3.7040227750861e-09!GO:0008565;protein transporter activity;4.3497695257851e-09!GO:0007264;small GTPase mediated signal transduction;4.97229499715147e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.18086220170101e-09!GO:0031252;leading edge;5.56089447483513e-09!GO:0019899;enzyme binding;7.60763718521313e-09!GO:0030163;protein catabolic process;9.19684520586476e-09!GO:0005525;GTP binding;9.21980551129199e-09!GO:0031980;mitochondrial lumen;9.21980551129199e-09!GO:0005759;mitochondrial matrix;9.21980551129199e-09!GO:0000502;proteasome complex (sensu Eukaryota);9.48410876785746e-09!GO:0005635;nuclear envelope;1.52400920709327e-08!GO:0003924;GTPase activity;1.58990085665981e-08!GO:0006461;protein complex assembly;1.69392907362264e-08!GO:0006915;apoptosis;2.33599300368119e-08!GO:0005083;small GTPase regulator activity;2.42036774185806e-08!GO:0012501;programmed cell death;2.42036774185806e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.53967362212241e-08!GO:0000375;RNA splicing, via transesterification reactions;2.53967362212241e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.53967362212241e-08!GO:0008219;cell death;2.54005741677963e-08!GO:0016265;death;2.54005741677963e-08!GO:0006446;regulation of translational initiation;2.54005741677963e-08!GO:0009057;macromolecule catabolic process;2.5940788132979e-08!GO:0003712;transcription cofactor activity;2.63867584203472e-08!GO:0030029;actin filament-based process;4.56206311449735e-08!GO:0006913;nucleocytoplasmic transport;4.78976865036438e-08!GO:0031965;nuclear membrane;4.8276795063028e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25323554973465e-08!GO:0048519;negative regulation of biological process;6.45206308135366e-08!GO:0007010;cytoskeleton organization and biogenesis;6.45604651724524e-08!GO:0005730;nucleolus;6.81676366360229e-08!GO:0006793;phosphorus metabolic process;6.83140478907552e-08!GO:0006796;phosphate metabolic process;6.83140478907552e-08!GO:0016044;membrane organization and biogenesis;6.88608576016537e-08!GO:0051169;nuclear transport;8.44672031103168e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45196260864506e-07!GO:0008639;small protein conjugating enzyme activity;1.67013795999977e-07!GO:0006413;translational initiation;1.68270520828325e-07!GO:0004842;ubiquitin-protein ligase activity;2.20442958408805e-07!GO:0032561;guanyl ribonucleotide binding;2.24142141283454e-07!GO:0019001;guanyl nucleotide binding;2.24142141283454e-07!GO:0003743;translation initiation factor activity;2.31645266301773e-07!GO:0019787;small conjugating protein ligase activity;2.54171400513993e-07!GO:0015935;small ribosomal subunit;2.59444039973725e-07!GO:0016564;transcription repressor activity;3.82490985170568e-07!GO:0006259;DNA metabolic process;4.25710612630117e-07!GO:0051246;regulation of protein metabolic process;7.87268163268121e-07!GO:0008047;enzyme activator activity;7.89020374395994e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.75265430493923e-07!GO:0044432;endoplasmic reticulum part;1.03359875901568e-06!GO:0019829;cation-transporting ATPase activity;1.16088951793112e-06!GO:0005096;GTPase activator activity;1.26560207901325e-06!GO:0005524;ATP binding;1.26560207901325e-06!GO:0006366;transcription from RNA polymerase II promoter;1.45808867564286e-06!GO:0032559;adenyl ribonucleotide binding;1.62548835387987e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65417579062586e-06!GO:0044440;endosomal part;1.6568325196177e-06!GO:0010008;endosome membrane;1.6568325196177e-06!GO:0016881;acid-amino acid ligase activity;2.298138282678e-06!GO:0044431;Golgi apparatus part;2.40172986579363e-06!GO:0016887;ATPase activity;3.40028067706422e-06!GO:0005770;late endosome;3.42518436686371e-06!GO:0015986;ATP synthesis coupled proton transport;3.84880311391064e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.84880311391064e-06!GO:0065007;biological regulation;3.85437679037863e-06!GO:0030554;adenyl nucleotide binding;3.98552186453877e-06!GO:0005769;early endosome;5.01202376754302e-06!GO:0003779;actin binding;5.201507003246e-06!GO:0051186;cofactor metabolic process;5.68340507272137e-06!GO:0006403;RNA localization;5.75908320517862e-06!GO:0015630;microtubule cytoskeleton;6.76970525757922e-06!GO:0050657;nucleic acid transport;6.76970525757922e-06!GO:0051236;establishment of RNA localization;6.76970525757922e-06!GO:0050658;RNA transport;6.76970525757922e-06!GO:0005773;vacuole;6.8840248263583e-06!GO:0044453;nuclear membrane part;7.37090786994452e-06!GO:0042623;ATPase activity, coupled;7.75781136735652e-06!GO:0017038;protein import;8.02788547517448e-06!GO:0007242;intracellular signaling cascade;9.46800886877396e-06!GO:0048475;coated membrane;1.02590999371536e-05!GO:0030117;membrane coat;1.02590999371536e-05!GO:0045045;secretory pathway;1.11622526646815e-05!GO:0015631;tubulin binding;1.12380572282588e-05!GO:0045786;negative regulation of progression through cell cycle;1.17177840750509e-05!GO:0030027;lamellipodium;1.2483360634915e-05!GO:0016310;phosphorylation;1.28247347709192e-05!GO:0048471;perinuclear region of cytoplasm;1.78666961363681e-05!GO:0015934;large ribosomal subunit;1.91027703519962e-05!GO:0006897;endocytosis;2.07697051808164e-05!GO:0010324;membrane invagination;2.07697051808164e-05!GO:0009060;aerobic respiration;2.23540520857295e-05!GO:0007265;Ras protein signal transduction;2.57850435838369e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.60948580953186e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.89502599363383e-05!GO:0003714;transcription corepressor activity;2.91708158736482e-05!GO:0000323;lytic vacuole;2.95920147555926e-05!GO:0005764;lysosome;2.95920147555926e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.08971632299503e-05!GO:0045333;cellular respiration;3.12758312124339e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.13401486455187e-05!GO:0016568;chromatin modification;3.23016948157092e-05!GO:0009056;catabolic process;3.2470336865448e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.52297392913819e-05!GO:0006163;purine nucleotide metabolic process;4.78232038296197e-05!GO:0005789;endoplasmic reticulum membrane;4.78232038296197e-05!GO:0005643;nuclear pore;4.79592256050552e-05!GO:0046034;ATP metabolic process;4.85705779824063e-05!GO:0005793;ER-Golgi intermediate compartment;5.08609609580411e-05!GO:0051128;regulation of cellular component organization and biogenesis;5.15799771341617e-05!GO:0009150;purine ribonucleotide metabolic process;5.54584030555983e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.08493214184153e-05!GO:0006164;purine nucleotide biosynthetic process;6.57100666901219e-05!GO:0006323;DNA packaging;6.6325152887962e-05!GO:0006754;ATP biosynthetic process;6.74753857151231e-05!GO:0006753;nucleoside phosphate metabolic process;6.74753857151231e-05!GO:0009152;purine ribonucleotide biosynthetic process;7.30444843808921e-05!GO:0009055;electron carrier activity;7.42923618255397e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.0081210320739e-05!GO:0006613;cotranslational protein targeting to membrane;8.0480911106297e-05!GO:0045259;proton-transporting ATP synthase complex;8.06687333793459e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.80055021080949e-05!GO:0005761;mitochondrial ribosome;8.80055021080949e-05!GO:0000313;organellar ribosome;8.80055021080949e-05!GO:0000245;spliceosome assembly;9.33711987310989e-05!GO:0009259;ribonucleotide metabolic process;9.78032653402543e-05!GO:0006606;protein import into nucleus;9.91563577243654e-05!GO:0051028;mRNA transport;0.000104072255828354!GO:0001726;ruffle;0.000104363922358134!GO:0009966;regulation of signal transduction;0.000107095747669905!GO:0006099;tricarboxylic acid cycle;0.000109176930539395!GO:0046356;acetyl-CoA catabolic process;0.000109176930539395!GO:0051170;nuclear import;0.000111584997565626!GO:0043069;negative regulation of programmed cell death;0.00011410018686112!GO:0032940;secretion by cell;0.000115795612211305!GO:0043066;negative regulation of apoptosis;0.000121243545413927!GO:0016197;endosome transport;0.000122215811819006!GO:0006888;ER to Golgi vesicle-mediated transport;0.000140205691733979!GO:0000139;Golgi membrane;0.000142323317590893!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000148495721248056!GO:0009144;purine nucleoside triphosphate metabolic process;0.000148495721248056!GO:0043566;structure-specific DNA binding;0.000148750572023856!GO:0008287;protein serine/threonine phosphatase complex;0.000150530582046711!GO:0006732;coenzyme metabolic process;0.000161638763635031!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000165607021801413!GO:0007243;protein kinase cascade;0.000168297947891505!GO:0009199;ribonucleoside triphosphate metabolic process;0.00017395311658938!GO:0009109;coenzyme catabolic process;0.0001798146564409!GO:0009892;negative regulation of metabolic process;0.000199624235567755!GO:0019222;regulation of metabolic process;0.000199624235567755!GO:0015078;hydrogen ion transmembrane transporter activity;0.000200736324282628!GO:0030120;vesicle coat;0.000200736324282628!GO:0030662;coated vesicle membrane;0.000200736324282628!GO:0003713;transcription coactivator activity;0.000217986149152445!GO:0005798;Golgi-associated vesicle;0.000224096160234778!GO:0004386;helicase activity;0.000261614422640061!GO:0009260;ribonucleotide biosynthetic process;0.000268409268224168!GO:0009141;nucleoside triphosphate metabolic process;0.000273374457737707!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000279319066420426!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000279319066420426!GO:0048468;cell development;0.000284944199465356!GO:0000151;ubiquitin ligase complex;0.000286756541782864!GO:0031072;heat shock protein binding;0.00030018412966496!GO:0051187;cofactor catabolic process;0.00030018412966496!GO:0009142;nucleoside triphosphate biosynthetic process;0.000335666979724049!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000335666979724049!GO:0032446;protein modification by small protein conjugation;0.000348496155943493!GO:0008017;microtubule binding;0.000392251959364036!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000397443718589504!GO:0008026;ATP-dependent helicase activity;0.000433987376390909!GO:0005905;coated pit;0.000437035171531041!GO:0030867;rough endoplasmic reticulum membrane;0.000438081921051665!GO:0006084;acetyl-CoA metabolic process;0.000442570422129008!GO:0006916;anti-apoptosis;0.000466863257741346!GO:0030133;transport vesicle;0.000481717045829568!GO:0005874;microtubule;0.000495429926004711!GO:0007049;cell cycle;0.000510680911057491!GO:0031324;negative regulation of cellular metabolic process;0.000520255494803208!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000531848871727971!GO:0016481;negative regulation of transcription;0.000627092435996092!GO:0016567;protein ubiquitination;0.000627176157333374!GO:0000074;regulation of progression through cell cycle;0.000630091927334117!GO:0051726;regulation of cell cycle;0.000642066402827168!GO:0003729;mRNA binding;0.000658700197977804!GO:0031901;early endosome membrane;0.000689219556656078!GO:0016791;phosphoric monoester hydrolase activity;0.000710725509400744!GO:0006607;NLS-bearing substrate import into nucleus;0.000751312385615456!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000751856460596778!GO:0015399;primary active transmembrane transporter activity;0.000751856460596778!GO:0006402;mRNA catabolic process;0.000796280096920236!GO:0006974;response to DNA damage stimulus;0.000824391124679903!GO:0005085;guanyl-nucleotide exchange factor activity;0.00085543335065717!GO:0042802;identical protein binding;0.000927811858025504!GO:0042981;regulation of apoptosis;0.00100859755173296!GO:0008654;phospholipid biosynthetic process;0.00101558743385403!GO:0051789;response to protein stimulus;0.00104849768344299!GO:0006986;response to unfolded protein;0.00104849768344299!GO:0051056;regulation of small GTPase mediated signal transduction;0.00108666180363974!GO:0043067;regulation of programmed cell death;0.00117869267852648!GO:0008154;actin polymerization and/or depolymerization;0.00120310971962468!GO:0003724;RNA helicase activity;0.0012563779253359!GO:0000902;cell morphogenesis;0.00127990135912403!GO:0032989;cellular structure morphogenesis;0.00127990135912403!GO:0005741;mitochondrial outer membrane;0.00141232394768659!GO:0043492;ATPase activity, coupled to movement of substances;0.00144886934842624!GO:0005791;rough endoplasmic reticulum;0.00144886934842624!GO:0051276;chromosome organization and biogenesis;0.00145050168108543!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00145486490687703!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00145486490687703!GO:0004812;aminoacyl-tRNA ligase activity;0.00145486490687703!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00145486490687703!GO:0006612;protein targeting to membrane;0.00146479348934314!GO:0019867;outer membrane;0.0015137172639457!GO:0003697;single-stranded DNA binding;0.00158554301985179!GO:0000159;protein phosphatase type 2A complex;0.00170542525010623!GO:0031968;organelle outer membrane;0.00170755202709169!GO:0001666;response to hypoxia;0.00173381781637416!GO:0005839;proteasome core complex (sensu Eukaryota);0.00177367150965708!GO:0007272;ensheathment of neurons;0.00178377265753479!GO:0008366;axon ensheathment;0.00178377265753479!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00179316359821102!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00192602277082427!GO:0015980;energy derivation by oxidation of organic compounds;0.00193807271906637!GO:0051188;cofactor biosynthetic process;0.00205634793309917!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00207461474588172!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00207659801797457!GO:0008361;regulation of cell size;0.00213301156306842!GO:0046930;pore complex;0.00219650372280696!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00219650372280696!GO:0043038;amino acid activation;0.00219650372280696!GO:0006418;tRNA aminoacylation for protein translation;0.00219650372280696!GO:0043039;tRNA aminoacylation;0.00219650372280696!GO:0006650;glycerophospholipid metabolic process;0.00222322683267954!GO:0005813;centrosome;0.00223998309562937!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00239754911605216!GO:0030118;clathrin coat;0.00246426306844576!GO:0045892;negative regulation of transcription, DNA-dependent;0.00247139533174979!GO:0051087;chaperone binding;0.00265213583913121!GO:0005099;Ras GTPase activator activity;0.00268115569941533!GO:0051168;nuclear export;0.0026870189824522!GO:0006401;RNA catabolic process;0.00274844363424056!GO:0004721;phosphoprotein phosphatase activity;0.00275775884914102!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00276681266728216!GO:0051427;hormone receptor binding;0.00279936972030135!GO:0008601;protein phosphatase type 2A regulator activity;0.00280289009353372!GO:0031902;late endosome membrane;0.00280289009353372!GO:0065002;intracellular protein transport across a membrane;0.00280340626752198!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00286664414276185!GO:0007050;cell cycle arrest;0.00286664414276185!GO:0043623;cellular protein complex assembly;0.00303695671787532!GO:0006752;group transfer coenzyme metabolic process;0.00312226982273752!GO:0030041;actin filament polymerization;0.00331867860055573!GO:0019904;protein domain specific binding;0.00333925108529752!GO:0016311;dephosphorylation;0.00345864820161391!GO:0043087;regulation of GTPase activity;0.0035008819832946!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00350897843020404!GO:0007019;microtubule depolymerization;0.00365674235375826!GO:0005667;transcription factor complex;0.00380783459030343!GO:0005100;Rho GTPase activator activity;0.00384385087706629!GO:0008286;insulin receptor signaling pathway;0.00387274917492291!GO:0043209;myelin sheath;0.00398348515333396!GO:0016049;cell growth;0.00405060974512547!GO:0001508;regulation of action potential;0.00414975223855945!GO:0007266;Rho protein signal transduction;0.0042123032790989!GO:0003690;double-stranded DNA binding;0.0042123032790989!GO:0006643;membrane lipid metabolic process;0.00424717982416386!GO:0030532;small nuclear ribonucleoprotein complex;0.00433703426200464!GO:0046467;membrane lipid biosynthetic process;0.00441817444800636!GO:0005885;Arp2/3 protein complex;0.00447937521386858!GO:0035257;nuclear hormone receptor binding;0.00461973754852038!GO:0008139;nuclear localization sequence binding;0.00465166613610256!GO:0005815;microtubule organizing center;0.00477167980832356!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00479221778242537!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00485301602954263!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00495524905323926!GO:0016563;transcription activator activity;0.00510915008465472!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00513431851129333!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00513431851129333!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00513431851129333!GO:0065009;regulation of a molecular function;0.00540111212909031!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00568481014297741!GO:0050811;GABA receptor binding;0.00568481014297741!GO:0046578;regulation of Ras protein signal transduction;0.00580271822613486!GO:0022890;inorganic cation transmembrane transporter activity;0.00591500209827791!GO:0016363;nuclear matrix;0.00614318152211649!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00624110608319005!GO:0051920;peroxiredoxin activity;0.00637933792450517!GO:0004298;threonine endopeptidase activity;0.00653855463363838!GO:0007034;vacuolar transport;0.00752265853669283!GO:0030384;phosphoinositide metabolic process;0.00835065456991785!GO:0019717;synaptosome;0.00837903651876657!GO:0009108;coenzyme biosynthetic process;0.00842796128407938!GO:0006891;intra-Golgi vesicle-mediated transport;0.00879733552165182!GO:0004722;protein serine/threonine phosphatase activity;0.00892925350958257!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00895310935151231!GO:0042254;ribosome biogenesis and assembly;0.00899222617927292!GO:0006950;response to stress;0.00914298297650731!GO:0048487;beta-tubulin binding;0.00989907283762655!GO:0043021;ribonucleoprotein binding;0.00999530561454533!GO:0006810;transport;0.0100392554798446!GO:0031323;regulation of cellular metabolic process;0.0100511300911876!GO:0006470;protein amino acid dephosphorylation;0.0102593236282005!GO:0048500;signal recognition particle;0.0104783727476479!GO:0019208;phosphatase regulator activity;0.0108475263270746!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0108767914716002!GO:0051179;localization;0.0109364391165331!GO:0006281;DNA repair;0.01131752656672!GO:0031114;regulation of microtubule depolymerization;0.011626110052383!GO:0007026;negative regulation of microtubule depolymerization;0.011626110052383!GO:0031124;mRNA 3'-end processing;0.011668750158195!GO:0048154;S100 beta binding;0.0120427693715609!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0120427693715609!GO:0004667;prostaglandin-D synthase activity;0.0120427693715609!GO:0050802;circadian sleep/wake cycle, sleep;0.0120427693715609!GO:0022410;circadian sleep/wake cycle process;0.0120427693715609!GO:0042749;regulation of circadian sleep/wake cycle;0.0120427693715609!GO:0008186;RNA-dependent ATPase activity;0.0121145899877707!GO:0005938;cell cortex;0.0121998390517386!GO:0030258;lipid modification;0.0122946802274662!GO:0003702;RNA polymerase II transcription factor activity;0.012552178471467!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0129489299666478!GO:0022406;membrane docking;0.0137123637893825!GO:0048278;vesicle docking;0.0137123637893825!GO:0005048;signal sequence binding;0.0137436513746703!GO:0030135;coated vesicle;0.0138329902039417!GO:0005774;vacuolar membrane;0.0138329902039417!GO:0000059;protein import into nucleus, docking;0.0141627791937395!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0145018582925968!GO:0051020;GTPase binding;0.015467907263626!GO:0030742;GTP-dependent protein binding;0.0155304081453192!GO:0019902;phosphatase binding;0.0160589390488669!GO:0008610;lipid biosynthetic process;0.0170932690491674!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0172692078007987!GO:0035035;histone acetyltransferase binding;0.0173098245525897!GO:0019783;small conjugating protein-specific protease activity;0.0190361303416851!GO:0010468;regulation of gene expression;0.0191694642568443!GO:0051261;protein depolymerization;0.0193767823770543!GO:0005765;lysosomal membrane;0.0193767823770543!GO:0033673;negative regulation of kinase activity;0.0193767823770543!GO:0006469;negative regulation of protein kinase activity;0.0193767823770543!GO:0007041;lysosomal transport;0.0194172258850598!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0196065504322146!GO:0045047;protein targeting to ER;0.0196065504322146!GO:0022402;cell cycle process;0.0197282447608672!GO:0030658;transport vesicle membrane;0.0198318484030171!GO:0009117;nucleotide metabolic process;0.0205237779873505!GO:0006350;transcription;0.0205240972716766!GO:0030569;chymotrypsin inhibitor activity;0.0205736200264244!GO:0006904;vesicle docking during exocytosis;0.020955526260592!GO:0009719;response to endogenous stimulus;0.0212355897623708!GO:0042026;protein refolding;0.0219857738270547!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0220457796556256!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0221814338544245!GO:0004843;ubiquitin-specific protease activity;0.0227701330927707!GO:0035258;steroid hormone receptor binding;0.0245249296466634!GO:0016050;vesicle organization and biogenesis;0.0245249296466634!GO:0005788;endoplasmic reticulum lumen;0.0246020087779326!GO:0001887;selenium metabolic process;0.0246835603959736!GO:0045893;positive regulation of transcription, DNA-dependent;0.0251943288981094!GO:0043488;regulation of mRNA stability;0.0252068397547457!GO:0043487;regulation of RNA stability;0.0252068397547457!GO:0006383;transcription from RNA polymerase III promoter;0.0260661894414096!GO:0000118;histone deacetylase complex;0.0260907961214016!GO:0007005;mitochondrion organization and biogenesis;0.0262290030041554!GO:0008312;7S RNA binding;0.0274295679865304!GO:0017166;vinculin binding;0.0274295679865304!GO:0046839;phospholipid dephosphorylation;0.0276939162277079!GO:0046983;protein dimerization activity;0.0281334067339048!GO:0006633;fatty acid biosynthetic process;0.0284829097950522!GO:0051252;regulation of RNA metabolic process;0.0284829097950522!GO:0051539;4 iron, 4 sulfur cluster binding;0.0285187278975719!GO:0015629;actin cytoskeleton;0.0287125422745905!GO:0001558;regulation of cell growth;0.0288192919843385!GO:0004674;protein serine/threonine kinase activity;0.0292097624475509!GO:0051348;negative regulation of transferase activity;0.0292097624475509!GO:0004004;ATP-dependent RNA helicase activity;0.029336464252729!GO:0006333;chromatin assembly or disassembly;0.0295509358275383!GO:0042552;myelination;0.0299362628024754!GO:0046474;glycerophospholipid biosynthetic process;0.0304790133392251!GO:0004221;ubiquitin thiolesterase activity;0.0308128131665216!GO:0006376;mRNA splice site selection;0.0308128131665216!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308128131665216!GO:0006672;ceramide metabolic process;0.0308128131665216!GO:0046489;phosphoinositide biosynthetic process;0.0309422021847514!GO:0051287;NAD binding;0.0311079388834444!GO:0045947;negative regulation of translational initiation;0.0311107653982676!GO:0016859;cis-trans isomerase activity;0.0314654534791389!GO:0016740;transferase activity;0.0315068998154608!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0316924374652405!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0317803786838161!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0317803786838161!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0317911070687604!GO:0000209;protein polyubiquitination;0.0317911070687604!GO:0006611;protein export from nucleus;0.0317911070687604!GO:0012506;vesicle membrane;0.0317911070687604!GO:0019888;protein phosphatase regulator activity;0.0321131217484079!GO:0042578;phosphoric ester hydrolase activity;0.0321810264674306!GO:0003725;double-stranded RNA binding;0.0327888722019447!GO:0005875;microtubule associated complex;0.0337999768837527!GO:0030660;Golgi-associated vesicle membrane;0.0348053670949717!GO:0006378;mRNA polyadenylation;0.0354655692414514!GO:0051098;regulation of binding;0.0354889077592945!GO:0031123;RNA 3'-end processing;0.0357407357587847!GO:0016408;C-acyltransferase activity;0.0359499738946948!GO:0046870;cadmium ion binding;0.0362004891303631!GO:0030119;AP-type membrane coat adaptor complex;0.0374813014145409!GO:0030132;clathrin coat of coated pit;0.0395960799168664!GO:0019911;structural constituent of myelin sheath;0.0398679304926438!GO:0044437;vacuolar part;0.0403707762121169!GO:0030521;androgen receptor signaling pathway;0.0406440317503951!GO:0006644;phospholipid metabolic process;0.0406662378247927!GO:0006665;sphingolipid metabolic process;0.0414109149848208!GO:0016301;kinase activity;0.0417530964114279!GO:0032318;regulation of Ras GTPase activity;0.0426683096030203!GO:0030031;cell projection biogenesis;0.0433063737925073!GO:0031109;microtubule polymerization or depolymerization;0.0444665062700499!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0445622540247507!GO:0033043;regulation of organelle organization and biogenesis;0.0445622540247507!GO:0030131;clathrin adaptor complex;0.0445752013218945!GO:0051540;metal cluster binding;0.0445752013218945!GO:0051536;iron-sulfur cluster binding;0.0445752013218945!GO:0003746;translation elongation factor activity;0.0445752013218945!GO:0006892;post-Golgi vesicle-mediated transport;0.0446744155235086!GO:0005869;dynactin complex;0.0447239476162547!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0452163987732887!GO:0044448;cell cortex part;0.0453929703948085!GO:0015682;ferric iron transport;0.0457955819008176!GO:0015091;ferric iron transmembrane transporter activity;0.0457955819008176!GO:0031643;positive regulation of myelination;0.0457955819008176!GO:0005545;phosphatidylinositol binding;0.0457955819008176!GO:0016126;sterol biosynthetic process;0.0462463091797145!GO:0030663;COPI coated vesicle membrane;0.0462463091797145!GO:0030126;COPI vesicle coat;0.0462463091797145!GO:0008250;oligosaccharyl transferase complex;0.046315650082336!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.047201894867358!GO:0009066;aspartate family amino acid metabolic process;0.0474352483689653!GO:0006399;tRNA metabolic process;0.0474352483689653!GO:0006414;translational elongation;0.0490558034292392!GO:0046519;sphingoid metabolic process;0.0490558034292392!GO:0051101;regulation of DNA binding;0.0495135660671257 | |||
|sample_id=10159 | |sample_id=10159 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=SOX2:3.51961377734;NFIX:3.4758119206;EP300:3.02634851096;GATA4:3.01587883798;SOX{8,9,10}:2.98062434898;SOX5:2.9698740497;BPTF:2.79660258958;RREB1:2.72893366293;HOX{A6,A7,B6,B7}:2.48595467957;TGIF1:2.43929579309;PRDM1:2.35588732447;MYFfamily:2.34057614065;RBPJ:2.3171773668;ZFP161:2.29192220121;NKX3-2:2.24804098935;POU6F1:2.11929301838;FOXQ1:2.07776107201;NR3C1:2.04611735393;FOXO1,3,4:2.02048789324;STAT1,3:2.00707325087;GTF2I:1.97839139299;ATF2:1.93876374692;CUX2:1.86761668168;POU5F1:1.86593251494;FOX{I1,J2}:1.84905825203;MED-1{core}:1.83244446081;PATZ1:1.82876508602;FOX{D1,D2}:1.81232252982;MZF1:1.81107629455;FOXD3:1.80038538266;OCT4_SOX2{dimer}:1.78623701329;NHLH1,2:1.76911477161;DBP:1.76187794892;FOXP3:1.75204625003;PRRX1,2:1.72111238654;FOX{F1,F2,J1}:1.71544885674;REST:1.70902122083;AR:1.66727081101;RFX2..5_RFXANK_RFXAP:1.63829610294;MAFB:1.59908517706;SOX17:1.59501559149;MTF1:1.58938694656;SREBF1,2:1.58709649549;PDX1:1.58004778484;MAZ:1.56249433613;MTE{core}:1.55087961664;ZBTB6:1.53905148483;HBP1_HMGB_SSRP1_UBTF:1.52436456225;MYBL2:1.49182897204;POU3F1..4:1.47562326467;SP1:1.46147781263;HIC1:1.46101904861;TFAP2B:1.45442486787;SMAD1..7,9:1.43254393805;PAX6:1.41297779771;STAT2,4,6:1.39557875743;NANOG:1.35758266339;VSX1,2:1.3135258071;FOXP1:1.3091168688;NRF1:1.18533816176;ZNF384:1.17000221757;LMO2:1.14223516764;TLX1..3_NFIC{dimer}:1.13298730942;RFX1:1.10936245172;TLX2:1.09432130219;EGR1..3:1.05439622509;GFI1B:1.04750190149;HSF1,2:1.02583699994;HMGA1,2:1.00868322728;ZNF143:1.00692461648;BREu{core}:1.00190994093;TFAP2{A,C}:0.983464264698;NKX6-1,2:0.972551139968;JUN:0.922065689818;ZNF423:0.898226435306;IRF7:0.889332274428;EBF1:0.8879205842;XBP1:0.88769440241;KLF4:0.851443422887;IKZF2:0.81940234957;PAX5:0.786897031148;ZIC1..3:0.752375798617;GFI1:0.737533420494;FOXM1:0.731967047457;GCM1,2:0.72417585725;HAND1,2:0.70004731651;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.678860871058;T:0.636296622234;NFATC1..3:0.627188244347;LEF1_TCF7_TCF7L1,2:0.60703317788;TOPORS:0.604102720592;RORA:0.565887186872;PBX1:0.514884403031;FOXA2:0.473755151315;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.468953706471;NFY{A,B,C}:0.465447439446;TFCP2:0.43561436386;CREB1:0.430145823651;SPZ1:0.390378895299;IRF1,2:0.347047622239;HOX{A4,D4}:0.317167742296;NFIL3:0.316988605421;NANOG{mouse}:0.294808894337;CDC5L:0.277343253843;CRX:0.264572509393;AHR_ARNT_ARNT2:0.242288684073;GZF1:0.178765377906;TFDP1:0.178056402099;NKX2-3_NKX2-5:0.153485536555;PAX2:0.153368024815;ZBTB16:0.141602009032;HMX1:0.11688123589;GTF2A1,2:0.0946816789792;ETS1,2:0.092189852519;PAX4:0.0865808224524;ATF4:0.0407169242555;PITX1..3:0.0363222059731;ONECUT1,2:0.0334799343947;NFE2L2:0.0334080155336;ARID5B:-0.0159989127662;DMAP1_NCOR{1,2}_SMARC:-0.0267357396129;SPIB:-0.0501004675525;ATF5_CREB3:-0.070515601013;ELF1,2,4:-0.0888628385763;CDX1,2,4:-0.0910478759756;HIF1A:-0.0923229955328;FOXN1:-0.0979928361201;SPI1:-0.0989715251889;MEF2{A,B,C,D}:-0.139362939913;NR6A1:-0.209917265447;POU1F1:-0.221041905354;CEBPA,B_DDIT3:-0.263132370629;NR1H4:-0.274679716644;HNF4A_NR2F1,2:-0.282955379263;HOXA9_MEIS1:-0.352113018806;TFAP4:-0.355305513405;ALX4:-0.356617001756;TP53:-0.357460785546;bHLH_family:-0.370309638923;ATF6:-0.37272666055;LHX3,4:-0.401411392077;TBP:-0.403515908792;ESRRA:-0.42815017982;YY1:-0.448505343046;MYOD1:-0.448951287948;NFE2:-0.450619828446;NFE2L1:-0.461652777027;XCPE1{core}:-0.468896389085;AIRE:-0.469516580349;GATA6:-0.469862652291;IKZF1:-0.517468346062;ALX1:-0.584045256695;NKX2-1,4:-0.590261002767;EVI1:-0.599918023563;ZNF238:-0.619915812125;NR5A1,2:-0.629323154689;SRF:-0.653008899201;NKX3-1:-0.670084700719;ZEB1:-0.678597456342;PAX3,7:-0.692721439702;TEAD1:-0.706572171804;PAX8:-0.738155915894;UFEwm:-0.743053585273;FOSL2:-0.7518082835;TEF:-0.7604765348;ELK1,4_GABP{A,B1}:-0.79323545887;E2F1..5:-0.807198876365;HNF1A:-0.836805179642;NKX2-2,8:-0.856022710173;TBX4,5:-0.86066695108;ADNP_IRX_SIX_ZHX:-0.889576506539;HLF:-0.897442432944;TAL1_TCF{3,4,12}:-0.902208171765;NFKB1_REL_RELA:-0.90235509989;RUNX1..3:-0.903890687332;FOS_FOS{B,L1}_JUN{B,D}:-0.912857929423;BACH2:-0.975763258744;MYB:-1.03223005107;SNAI1..3:-1.03586380635;RXRA_VDR{dimer}:-1.09044215169;RXR{A,B,G}:-1.10982115359;FOXL1:-1.14115555006;ZNF148:-1.26125208647;POU2F1..3:-1.37168229088;PPARG:-1.39363779122;PAX1,9:-1.49857631344;HES1:-1.49897773131;GLI1..3:-1.80926531221;EN1,2:-1.84948698378;ESR1:-1.97280158726;HOX{A5,B5}:-2.06737605874;STAT5{A,B}:-2.32246987152 | |top_motifs=SOX2:3.51961377734;NFIX:3.4758119206;EP300:3.02634851096;GATA4:3.01587883798;SOX{8,9,10}:2.98062434898;SOX5:2.9698740497;BPTF:2.79660258958;RREB1:2.72893366293;HOX{A6,A7,B6,B7}:2.48595467957;TGIF1:2.43929579309;PRDM1:2.35588732447;MYFfamily:2.34057614065;RBPJ:2.3171773668;ZFP161:2.29192220121;NKX3-2:2.24804098935;POU6F1:2.11929301838;FOXQ1:2.07776107201;NR3C1:2.04611735393;FOXO1,3,4:2.02048789324;STAT1,3:2.00707325087;GTF2I:1.97839139299;ATF2:1.93876374692;CUX2:1.86761668168;POU5F1:1.86593251494;FOX{I1,J2}:1.84905825203;MED-1{core}:1.83244446081;PATZ1:1.82876508602;FOX{D1,D2}:1.81232252982;MZF1:1.81107629455;FOXD3:1.80038538266;OCT4_SOX2{dimer}:1.78623701329;NHLH1,2:1.76911477161;DBP:1.76187794892;FOXP3:1.75204625003;PRRX1,2:1.72111238654;FOX{F1,F2,J1}:1.71544885674;REST:1.70902122083;AR:1.66727081101;RFX2..5_RFXANK_RFXAP:1.63829610294;MAFB:1.59908517706;SOX17:1.59501559149;MTF1:1.58938694656;SREBF1,2:1.58709649549;PDX1:1.58004778484;MAZ:1.56249433613;MTE{core}:1.55087961664;ZBTB6:1.53905148483;HBP1_HMGB_SSRP1_UBTF:1.52436456225;MYBL2:1.49182897204;POU3F1..4:1.47562326467;SP1:1.46147781263;HIC1:1.46101904861;TFAP2B:1.45442486787;SMAD1..7,9:1.43254393805;PAX6:1.41297779771;STAT2,4,6:1.39557875743;NANOG:1.35758266339;VSX1,2:1.3135258071;FOXP1:1.3091168688;NRF1:1.18533816176;ZNF384:1.17000221757;LMO2:1.14223516764;TLX1..3_NFIC{dimer}:1.13298730942;RFX1:1.10936245172;TLX2:1.09432130219;EGR1..3:1.05439622509;GFI1B:1.04750190149;HSF1,2:1.02583699994;HMGA1,2:1.00868322728;ZNF143:1.00692461648;BREu{core}:1.00190994093;TFAP2{A,C}:0.983464264698;NKX6-1,2:0.972551139968;JUN:0.922065689818;ZNF423:0.898226435306;IRF7:0.889332274428;EBF1:0.8879205842;XBP1:0.88769440241;KLF4:0.851443422887;IKZF2:0.81940234957;PAX5:0.786897031148;ZIC1..3:0.752375798617;GFI1:0.737533420494;FOXM1:0.731967047457;GCM1,2:0.72417585725;HAND1,2:0.70004731651;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.678860871058;T:0.636296622234;NFATC1..3:0.627188244347;LEF1_TCF7_TCF7L1,2:0.60703317788;TOPORS:0.604102720592;RORA:0.565887186872;PBX1:0.514884403031;FOXA2:0.473755151315;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.468953706471;NFY{A,B,C}:0.465447439446;TFCP2:0.43561436386;CREB1:0.430145823651;SPZ1:0.390378895299;IRF1,2:0.347047622239;HOX{A4,D4}:0.317167742296;NFIL3:0.316988605421;NANOG{mouse}:0.294808894337;CDC5L:0.277343253843;CRX:0.264572509393;AHR_ARNT_ARNT2:0.242288684073;GZF1:0.178765377906;TFDP1:0.178056402099;NKX2-3_NKX2-5:0.153485536555;PAX2:0.153368024815;ZBTB16:0.141602009032;HMX1:0.11688123589;GTF2A1,2:0.0946816789792;ETS1,2:0.092189852519;PAX4:0.0865808224524;ATF4:0.0407169242555;PITX1..3:0.0363222059731;ONECUT1,2:0.0334799343947;NFE2L2:0.0334080155336;ARID5B:-0.0159989127662;DMAP1_NCOR{1,2}_SMARC:-0.0267357396129;SPIB:-0.0501004675525;ATF5_CREB3:-0.070515601013;ELF1,2,4:-0.0888628385763;CDX1,2,4:-0.0910478759756;HIF1A:-0.0923229955328;FOXN1:-0.0979928361201;SPI1:-0.0989715251889;MEF2{A,B,C,D}:-0.139362939913;NR6A1:-0.209917265447;POU1F1:-0.221041905354;CEBPA,B_DDIT3:-0.263132370629;NR1H4:-0.274679716644;HNF4A_NR2F1,2:-0.282955379263;HOXA9_MEIS1:-0.352113018806;TFAP4:-0.355305513405;ALX4:-0.356617001756;TP53:-0.357460785546;bHLH_family:-0.370309638923;ATF6:-0.37272666055;LHX3,4:-0.401411392077;TBP:-0.403515908792;ESRRA:-0.42815017982;YY1:-0.448505343046;MYOD1:-0.448951287948;NFE2:-0.450619828446;NFE2L1:-0.461652777027;XCPE1{core}:-0.468896389085;AIRE:-0.469516580349;GATA6:-0.469862652291;IKZF1:-0.517468346062;ALX1:-0.584045256695;NKX2-1,4:-0.590261002767;EVI1:-0.599918023563;ZNF238:-0.619915812125;NR5A1,2:-0.629323154689;SRF:-0.653008899201;NKX3-1:-0.670084700719;ZEB1:-0.678597456342;PAX3,7:-0.692721439702;TEAD1:-0.706572171804;PAX8:-0.738155915894;UFEwm:-0.743053585273;FOSL2:-0.7518082835;TEF:-0.7604765348;ELK1,4_GABP{A,B1}:-0.79323545887;E2F1..5:-0.807198876365;HNF1A:-0.836805179642;NKX2-2,8:-0.856022710173;TBX4,5:-0.86066695108;ADNP_IRX_SIX_ZHX:-0.889576506539;HLF:-0.897442432944;TAL1_TCF{3,4,12}:-0.902208171765;NFKB1_REL_RELA:-0.90235509989;RUNX1..3:-0.903890687332;FOS_FOS{B,L1}_JUN{B,D}:-0.912857929423;BACH2:-0.975763258744;MYB:-1.03223005107;SNAI1..3:-1.03586380635;RXRA_VDR{dimer}:-1.09044215169;RXR{A,B,G}:-1.10982115359;FOXL1:-1.14115555006;ZNF148:-1.26125208647;POU2F1..3:-1.37168229088;PPARG:-1.39363779122;PAX1,9:-1.49857631344;HES1:-1.49897773131;GLI1..3:-1.80926531221;EN1,2:-1.84948698378;ESR1:-1.97280158726;HOX{A5,B5}:-2.06737605874;STAT5{A,B}:-2.32246987152 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10159-103A6;search_select_hide=table117:FF:10159-103A6 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | spinal cord, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12227 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12227
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12227
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0709 |
| 10 | 10 | 0.0663 |
| 100 | 100 | 0.348 |
| 101 | 101 | 0.471 |
| 102 | 102 | 0.842 |
| 103 | 103 | 0.0297 |
| 104 | 104 | 0.0667 |
| 105 | 105 | 0.67 |
| 106 | 106 | 0.0191 |
| 107 | 107 | 0.131 |
| 108 | 108 | 0.547 |
| 109 | 109 | 0.001 |
| 11 | 11 | 0.0136 |
| 110 | 110 | 0.0761 |
| 111 | 111 | 0.105 |
| 112 | 112 | 0.333 |
| 113 | 113 | 0.23 |
| 114 | 114 | 0.0913 |
| 115 | 115 | 0.721 |
| 116 | 116 | 0.0729 |
| 117 | 117 | 0.0153 |
| 118 | 118 | 0.124 |
| 119 | 119 | 0.158 |
| 12 | 12 | 0.563 |
| 120 | 120 | 0.228 |
| 121 | 121 | 0.893 |
| 122 | 122 | 0.782 |
| 123 | 123 | 0.856 |
| 124 | 124 | 0.317 |
| 125 | 125 | 0.566 |
| 126 | 126 | 0.187 |
| 127 | 127 | 0.451 |
| 128 | 128 | 0.164 |
| 129 | 129 | 0.43 |
| 13 | 13 | 0.0102 |
| 130 | 130 | 0.556 |
| 131 | 131 | 0.00291 |
| 132 | 132 | 0.523 |
| 133 | 133 | 0.0786 |
| 134 | 134 | 0.436 |
| 135 | 135 | 0.0592 |
| 136 | 136 | 0.00116 |
| 137 | 137 | 0.823 |
| 138 | 138 | 0.906 |
| 139 | 139 | 0.14 |
| 14 | 14 | 0.96 |
| 140 | 140 | 0.393 |
| 141 | 141 | 0.426 |
| 142 | 142 | 0.523 |
| 143 | 143 | 0.0509 |
| 144 | 144 | 0.969 |
| 145 | 145 | 0.354 |
| 146 | 146 | 0.682 |
| 147 | 147 | 0.675 |
| 148 | 148 | 0.35 |
| 149 | 149 | 0.0897 |
| 15 | 15 | 0.0525 |
| 150 | 150 | 0.0859 |
| 151 | 151 | 0.665 |
| 152 | 152 | 0.0658 |
| 153 | 153 | 0.959 |
| 154 | 154 | 0.505 |
| 155 | 155 | 0.621 |
| 156 | 156 | 0.164 |
| 157 | 157 | 0.364 |
| 158 | 158 | 0.0681 |
| 159 | 159 | 0.00573 |
| 16 | 16 | 0.0317 |
| 160 | 160 | 0.156 |
| 161 | 161 | 0.164 |
| 162 | 162 | 0.969 |
| 163 | 163 | 0.821 |
| 164 | 164 | 0.0136 |
| 165 | 165 | 0.481 |
| 166 | 166 | 0.934 |
| 167 | 167 | 0.964 |
| 168 | 168 | 0.924 |
| 169 | 169 | 0.0214 |
| 17 | 17 | 0.0497 |
| 18 | 18 | 0.0286 |
| 19 | 19 | 0.377 |
| 2 | 2 | 0.961 |
| 20 | 20 | 0.23 |
| 21 | 21 | 0.0282 |
| 22 | 22 | 0.34 |
| 23 | 23 | 0.565 |
| 24 | 24 | 0.129 |
| 25 | 25 | 0.796 |
| 26 | 26 | 0.00395 |
| 27 | 27 | 0.626 |
| 28 | 28 | 0.872 |
| 29 | 29 | 0.00447 |
| 3 | 3 | 0.0623 |
| 30 | 30 | 0.911 |
| 31 | 31 | 0.856 |
| 32 | 32 | 0.00604 |
| 33 | 33 | 0.0783 |
| 34 | 34 | 0.867 |
| 35 | 35 | 0.485 |
| 36 | 36 | 0.316 |
| 37 | 37 | 0.029 |
| 38 | 38 | 0.561 |
| 39 | 39 | 0.284 |
| 4 | 4 | 0.855 |
| 40 | 40 | 0.109 |
| 41 | 41 | 0.316 |
| 42 | 42 | 0.313 |
| 43 | 43 | 0.185 |
| 44 | 44 | 0.0212 |
| 45 | 45 | 0.763 |
| 46 | 46 | 0.0285 |
| 47 | 47 | 0.0683 |
| 48 | 48 | 0.0551 |
| 49 | 49 | 0.353 |
| 5 | 5 | 0.995 |
| 50 | 50 | 0.653 |
| 51 | 51 | 0.285 |
| 52 | 52 | 0.731 |
| 53 | 53 | 0.557 |
| 54 | 54 | 0.548 |
| 55 | 55 | 0.923 |
| 56 | 56 | 0.601 |
| 57 | 57 | 0.289 |
| 58 | 58 | 0.467 |
| 59 | 59 | 0.0661 |
| 6 | 6 | 0.971 |
| 60 | 60 | 0.174 |
| 61 | 61 | 0.127 |
| 62 | 62 | 0.251 |
| 63 | 63 | 0.285 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.309 |
| 66 | 66 | 0.23 |
| 67 | 67 | 0.532 |
| 68 | 68 | 0.44 |
| 69 | 69 | 0.344 |
| 7 | 7 | 0.201 |
| 70 | 70 | 0.0125 |
| 71 | 71 | 0.00915 |
| 72 | 72 | 0.382 |
| 73 | 73 | 0.0365 |
| 74 | 74 | 0.594 |
| 75 | 75 | 0.0201 |
| 76 | 76 | 0.182 |
| 77 | 77 | 0.112 |
| 78 | 78 | 0.0039 |
| 79 | 79 | 0.5 |
| 8 | 8 | 0.0274 |
| 80 | 80 | 0.929 |
| 81 | 81 | 0.629 |
| 82 | 82 | 0.571 |
| 83 | 83 | 0.245 |
| 84 | 84 | 0.421 |
| 85 | 85 | 0.473 |
| 86 | 86 | 0.183 |
| 87 | 87 | 1.02689e-4 |
| 88 | 88 | 0.677 |
| 89 | 89 | 0.161 |
| 9 | 9 | 0.63 |
| 90 | 90 | 0.212 |
| 91 | 91 | 0.452 |
| 92 | 92 | 0.65 |
| 93 | 93 | 0.988 |
| 94 | 94 | 0.141 |
| 95 | 95 | 0.00606 |
| 96 | 96 | 0.543 |
| 97 | 97 | 0.913 |
| 98 | 98 | 0.208 |
| 99 | 99 | 0.37 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12227
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010159 human spinal cord - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010159 (human spinal cord - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
