FFCP PHASE1:Mm9::chr3:106904469..106904480,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16490|HGNC=|MCL_coexpression_id=1|UniProt=P63141,B2RS05,Q3TZ64|association_with_transcript=-4bp_to_ENSMUST00000038695,NM_008417,uc008qws.1_5end|description=CAGE_peak_4_at_Kcna2_5end|id=chr3:106904469..106904480,+|ontology_enrichment_celltype=CL:0000117!3.25e-08!23;CL:0000337!3.25e-08!23|ontology_enrichment_celltype_v019_2=CL:0002610,4.94e-11,3;CL:0002614,2.49e-10,3;CL:0000117,9.03e-08,23;CL:0000337,9.03e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.12e-25!52;UBERON:0005068!5.12e-25!52;UBERON:0006241!5.12e-25!52;UBERON:0007135!5.12e-25!52;UBERON:0000955!2.33e-23!50;UBERON:0006238!2.33e-23!50;UBERON:0002616!2.09e-22!49;UBERON:0002020!1.29e-21!34;UBERON:0000073!2.62e-21!75;UBERON:0001016!2.62e-21!75;UBERON:0000033!2.83e-21!63;UBERON:0001017!4.26e-21!73;UBERON:0005743!4.26e-21!73;UBERON:0002346!1.39e-18!71;UBERON:0003075!1.39e-18!71;UBERON:0007284!1.39e-18!71;UBERON:0004121!1.36e-17!102;UBERON:0000924!1.36e-17!102;UBERON:0006601!1.36e-17!102;UBERON:0002791!1.47e-16!29;UBERON:0003528!1.47e-16!29;UBERON:0001893!1.47e-16!29;UBERON:0003080!9.39e-16!40;UBERON:0007811!1.20e-15!86;UBERON:0003056!8.53e-15!49;UBERON:0002780!9.89e-15!39;UBERON:0001890!9.89e-15!39;UBERON:0006240!9.89e-15!39;UBERON:0000153!3.04e-13!94;UBERON:0002021!8.19e-13!10;UBERON:0000411!8.19e-13!10;UBERON:0001950!8.19e-13!10;UBERON:0002619!4.66e-12!17;UBERON:0000956!1.18e-10!21;UBERON:0001869!1.18e-10!21;UBERON:0000203!1.18e-10!21;UBERON:0003076!2.26e-10!12;UBERON:0003057!2.26e-10!12;UBERON:0002298!6.11e-09!6;UBERON:0002240!6.57e-08!6;UBERON:0005174!6.57e-08!6;UBERON:0001137!6.57e-08!6;UBERON:0000025!1.07e-07!114;UBERON:0002420!2.32e-07!8;UBERON:0007245!2.32e-07!8;UBERON:0010009!2.32e-07!8;UBERON:0010011!2.32e-07!8;UBERON:0000454!2.32e-07!8;UBERON:0004111!4.47e-07!122;UBERON:0000064!8.29e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.36e-38,54;UBERON:0001049,7.24e-33,52;UBERON:0005068,7.24e-33,52;UBERON:0006241,7.24e-33,52;UBERON:0007135,7.24e-33,52;UBERON:0001017,3.75e-29,73;UBERON:0002616,1.30e-28,46;UBERON:0001016,3.03e-28,75;UBERON:0000955,6.54e-28,47;UBERON:0006238,6.54e-28,47;UBERON:0002346,7.92e-26,64;UBERON:0003075,7.92e-26,64;UBERON:0007284,7.92e-26,64;UBERON:0002021,3.72e-23,10;UBERON:0000411,3.72e-23,10;UBERON:0001950,3.72e-23,10;UBERON:0002020,2.41e-22,34;UBERON:0010371,4.62e-22,73;UBERON:0004121,2.88e-21,95;UBERON:0000924,2.88e-21,95;UBERON:0006601,2.88e-21,95;UBERON:0003080,3.28e-21,40;UBERON:0003528,9.83e-21,29;UBERON:0002791,9.83e-21,29;UBERON:0001893,9.83e-21,29;UBERON:0002780,3.15e-19,39;UBERON:0001890,3.15e-19,39;UBERON:0006240,3.15e-19,39;UBERON:0003056,1.23e-16,49;UBERON:0010314,1.61e-16,92;UBERON:0002619,6.14e-16,17;UBERON:0000956,2.32e-15,21;UBERON:0001869,2.32e-15,21;UBERON:0000203,2.32e-15,21;UBERON:0002950,3.49e-13,4;UBERON:0001891,3.49e-13,4;UBERON:0009616,3.49e-13,4;UBERON:0010286,3.49e-13,4;UBERON:0000025,2.12e-12,114;UBERON:0003076,2.49e-12,12;UBERON:0003057,2.49e-12,12;UBERON:0004111,2.88e-11,122;UBERON:0004684,4.94e-11,3;UBERON:0002275,4.94e-11,3;UBERON:0002038,2.49e-10,3;UBERON:0009663,2.49e-10,3;UBERON:0009661,2.49e-10,3;UBERON:0000125,2.49e-10,3;UBERON:0002308,2.49e-10,3;UBERON:0004733,3.54e-09,6;UBERON:0004732,3.54e-09,6;UBERON:0002028,3.54e-09,6;UBERON:0007277,3.54e-09,6;UBERON:0011216,8.52e-08,194;UBERON:0001896,1.81e-07,2;UBERON:0002298,1.81e-07,2;UBERON:0005290,1.81e-07,2;UBERON:0010096,1.81e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,1.42825492201902,0.662605622854841,0,0.0958454710182364,0,5.50579404996943,6.2566795661742,3.07213066512487,0.131886287730194,0,0.52091337055676,3.07101298901519,1.68828783009504,4.12555268997387,1.47314292736834,0.996601765593721,0.931997229126503,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22058876712702,6.28340120440365,0,0,0,0,2.69623150928681,1.83000241127451,0.251308704225729,2.43354048269187,1.53429274398198,2.28566849015516,1.78465389374533,0,0,0,0,0,0,0,0,0.340182495756639,0,0.187403449119458,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.102904612379284,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,2.72936002979246,2.81308047821288,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0.642642632843614,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0.119372344003136,0,0,3.8939313422207,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,3.26521046453006,2.74033007908257,1.5107877947794,1.35004500046361,2.2516060161211,1.81256963593682,2.5888015587591,0.103787347584177,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0.128050304809739,0.0574354689556133,0,0.231768651889711,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0,0,0,0.154936841185966,0,0.249810577937946,0,0,0,0,0|short_description=p4@Kcna2}} | ||
|EntrezGene=16490 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P63141,B2RS05,Q3TZ64 | |||
|association_with_transcript=-4bp_to_ENSMUST00000038695,NM_008417,uc008qws.1_5end | |||
|description=CAGE_peak_4_at_Kcna2_5end | |||
|id=chr3:106904469..106904480,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.25e-08!23;CL:0000337!3.25e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,4.94e-11,3;CL:0002614,2.49e-10,3;CL:0000117,9.03e-08,23;CL:0000337,9.03e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.12e-25!52;UBERON:0005068!5.12e-25!52;UBERON:0006241!5.12e-25!52;UBERON:0007135!5.12e-25!52;UBERON:0000955!2.33e-23!50;UBERON:0006238!2.33e-23!50;UBERON:0002616!2.09e-22!49;UBERON:0002020!1.29e-21!34;UBERON:0000073!2.62e-21!75;UBERON:0001016!2.62e-21!75;UBERON:0000033!2.83e-21!63;UBERON:0001017!4.26e-21!73;UBERON:0005743!4.26e-21!73;UBERON:0002346!1.39e-18!71;UBERON:0003075!1.39e-18!71;UBERON:0007284!1.39e-18!71;UBERON:0004121!1.36e-17!102;UBERON:0000924!1.36e-17!102;UBERON:0006601!1.36e-17!102;UBERON:0002791!1.47e-16!29;UBERON:0003528!1.47e-16!29;UBERON:0001893!1.47e-16!29;UBERON:0003080!9.39e-16!40;UBERON:0007811!1.20e-15!86;UBERON:0003056!8.53e-15!49;UBERON:0002780!9.89e-15!39;UBERON:0001890!9.89e-15!39;UBERON:0006240!9.89e-15!39;UBERON:0000153!3.04e-13!94;UBERON:0002021!8.19e-13!10;UBERON:0000411!8.19e-13!10;UBERON:0001950!8.19e-13!10;UBERON:0002619!4.66e-12!17;UBERON:0000956!1.18e-10!21;UBERON:0001869!1.18e-10!21;UBERON:0000203!1.18e-10!21;UBERON:0003076!2.26e-10!12;UBERON:0003057!2.26e-10!12;UBERON:0002298!6.11e-09!6;UBERON:0002240!6.57e-08!6;UBERON:0005174!6.57e-08!6;UBERON:0001137!6.57e-08!6;UBERON:0000025!1.07e-07!114;UBERON:0002420!2.32e-07!8;UBERON:0007245!2.32e-07!8;UBERON:0010009!2.32e-07!8;UBERON:0010011!2.32e-07!8;UBERON:0000454!2.32e-07!8;UBERON:0004111!4.47e-07!122;UBERON:0000064!8.29e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.36e-38,54;UBERON:0001049,7.24e-33,52;UBERON:0005068,7.24e-33,52;UBERON:0006241,7.24e-33,52;UBERON:0007135,7.24e-33,52;UBERON:0001017,3.75e-29,73;UBERON:0002616,1.30e-28,46;UBERON:0001016,3.03e-28,75;UBERON:0000955,6.54e-28,47;UBERON:0006238,6.54e-28,47;UBERON:0002346,7.92e-26,64;UBERON:0003075,7.92e-26,64;UBERON:0007284,7.92e-26,64;UBERON:0002021,3.72e-23,10;UBERON:0000411,3.72e-23,10;UBERON:0001950,3.72e-23,10;UBERON:0002020,2.41e-22,34;UBERON:0010371,4.62e-22,73;UBERON:0004121,2.88e-21,95;UBERON:0000924,2.88e-21,95;UBERON:0006601,2.88e-21,95;UBERON:0003080,3.28e-21,40;UBERON:0003528,9.83e-21,29;UBERON:0002791,9.83e-21,29;UBERON:0001893,9.83e-21,29;UBERON:0002780,3.15e-19,39;UBERON:0001890,3.15e-19,39;UBERON:0006240,3.15e-19,39;UBERON:0003056,1.23e-16,49;UBERON:0010314,1.61e-16,92;UBERON:0002619,6.14e-16,17;UBERON:0000956,2.32e-15,21;UBERON:0001869,2.32e-15,21;UBERON:0000203,2.32e-15,21;UBERON:0002950,3.49e-13,4;UBERON:0001891,3.49e-13,4;UBERON:0009616,3.49e-13,4;UBERON:0010286,3.49e-13,4;UBERON:0000025,2.12e-12,114;UBERON:0003076,2.49e-12,12;UBERON:0003057,2.49e-12,12;UBERON:0004111,2.88e-11,122;UBERON:0004684,4.94e-11,3;UBERON:0002275,4.94e-11,3;UBERON:0002038,2.49e-10,3;UBERON:0009663,2.49e-10,3;UBERON:0009661,2.49e-10,3;UBERON:0000125,2.49e-10,3;UBERON:0002308,2.49e-10,3;UBERON:0004733,3.54e-09,6;UBERON:0004732,3.54e-09,6;UBERON:0002028,3.54e-09,6;UBERON:0007277,3.54e-09,6;UBERON:0011216,8.52e-08,194;UBERON:0001896,1.81e-07,2;UBERON:0002298,1.81e-07,2;UBERON:0005290,1.81e-07,2;UBERON:0010096,1.81e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,1.42825492201902,0.662605622854841,0,0.0958454710182364,0,5.50579404996943,6.2566795661742,3.07213066512487,0.131886287730194,0,0.52091337055676,3.07101298901519,1.68828783009504,4.12555268997387,1.47314292736834,0.996601765593721,0.931997229126503,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22058876712702,6.28340120440365,0,0,0,0,2.69623150928681,1.83000241127451,0.251308704225729,2.43354048269187,1.53429274398198,2.28566849015516,1.78465389374533,0,0,0,0,0,0,0,0,0.340182495756639,0,0.187403449119458,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.102904612379284,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,2.72936002979246,2.81308047821288,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0.642642632843614,0.141940085208269,0,0.325773918707152,0.164970122972535,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0.119372344003136,0,0,3.8939313422207,0,0,0,0,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,3.26521046453006,2.74033007908257,1.5107877947794,1.35004500046361,2.2516060161211,1.81256963593682,2.5888015587591,0.103787347584177,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0.128050304809739,0.0574354689556133,0,0.231768651889711,0,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0,0,0,0.154936841185966,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p4@Kcna2 | |||
}} |
Revision as of 01:10, 14 September 2013
Short description: | p4@Kcna2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Kcna2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -4bp_to_ENSMUST00000038695, NM_008417, uc008qws.1_5end |
EntrezGene: | Kcna2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 4.94e-11 | 3 |
neuron of the substantia nigra | 2.49e-10 | 3 |
CNS neuron (sensu Vertebrata) | 9.03e-08 | 23 |
neuroblast (sensu Vertebrata) | 9.03e-08 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.