FFCP PHASE1:Hg19::chr20:19915739..19915783,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54453|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18750|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000484638,uc010gcv.1_5end|coexpression_cluster_id=C0|description=CAGE_peak_1_at_RIN2_5end|id=chr20:19915739..19915783,+|ontology_enrichment_celltype=CL:0002057!3.85e-33!42;CL:0002009!3.46e-32!65;CL:0000557!3.81e-32!71;CL:0000766!5.61e-32!76;CL:0002194!4.11e-31!63;CL:0000576!4.11e-31!63;CL:0000040!4.11e-31!63;CL:0000559!4.11e-31!63;CL:0000839!3.63e-30!70;CL:0000860!3.25e-29!45;CL:0000738!8.12e-17!140;CL:0000763!4.49e-16!112;CL:0000049!4.49e-16!112;CL:0002031!1.28e-14!124;CL:0002087!1.56e-14!119;CL:0000037!2.38e-09!172;CL:0000566!2.38e-09!172;CL:0002032!2.56e-08!165;CL:0000837!2.56e-08!165;CL:0002393!6.34e-08!9;CL:0002397!6.34e-08!9;CL:0000988!1.06e-07!182;CL:0000115!9.37e-07!35|ontology_enrichment_celltype_v019=CL:0000860;4.78e-29;33!CL:0002057;4.78e-29;33!CL:0000473;1.40e-28;39!CL:0000234;1.40e-28;39!CL:0000576;1.35e-24;48!CL:0000766;2.41e-19;69!CL:0000763;1.33e-07;100!CL:0002393;7.11e-07;6!CL:0002397;7.11e-07;6|ontology_enrichment_celltype_v019_2=CL:0000473,4.84e-45,48;CL:0000234,4.84e-45,48;CL:0002009,7.80e-41,61;CL:0000766,5.42e-40,72;CL:0000557,5.99e-40,67;CL:0000860,8.00e-40,42;CL:0002057,8.00e-40,42;CL:0002194,1.57e-39,59;CL:0000576,1.57e-39,59;CL:0000040,1.57e-39,59;CL:0000559,1.57e-39,59;CL:0000839,1.17e-37,66;CL:0000763,5.55e-21,108;CL:0000049,5.55e-21,108;CL:0000738,1.37e-18,136;CL:0002087,4.91e-16,115;CL:0002031,7.53e-16,120;CL:0000037,6.16e-11,168;CL:0002032,1.46e-09,161;CL:0000837,1.46e-09,161;CL:0002393,2.89e-09,9;CL:0002397,2.89e-09,9;CL:0000988,3.25e-09,177;CL:0000115,8.02e-07,36|ontology_enrichment_development_v019=CL:0002057;1.09e-28;42!CL:0000049;8.45e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.87e-38!115;UBERON:0002193!1.27e-29!112;UBERON:0002390!2.82e-28!102;UBERON:0003061!2.82e-28!102;UBERON:0002371!1.77e-25!80;UBERON:0001474!1.55e-21!86;UBERON:0002405!5.75e-21!115;UBERON:0004765!1.76e-18!101;UBERON:0001434!1.76e-18!101;UBERON:0000480!3.07e-15!626;UBERON:0000467!4.43e-15!625;UBERON:0003081!1.33e-13!216;UBERON:0000062!9.42e-13!511;UBERON:0002050!1.07e-12!605;UBERON:0005423!1.07e-12!605;UBERON:0000923!1.54e-12!604;UBERON:0005291!1.54e-12!604;UBERON:0006598!1.54e-12!604;UBERON:0002532!1.54e-12!604;UBERON:0000468!2.10e-12!659;UBERON:0000922!2.41e-12!612;UBERON:0001049!3.15e-12!57;UBERON:0005068!3.15e-12!57;UBERON:0006241!3.15e-12!57;UBERON:0007135!3.15e-12!57;UBERON:0003080!1.37e-10!42;UBERON:0002780!3.91e-10!41;UBERON:0001890!3.91e-10!41;UBERON:0006240!3.91e-10!41;UBERON:0002616!6.78e-09!59;UBERON:0001893!4.15e-08!34;UBERON:0002020!5.38e-08!34;UBERON:0003528!5.38e-08!34;UBERON:0003075!8.50e-08!86;UBERON:0007284!8.50e-08!86;UBERON:0002791!8.59e-08!33;UBERON:0000955!1.87e-07!69;UBERON:0006238!1.87e-07!69;UBERON:0002346!2.56e-07!90;UBERON:0001869!3.87e-07!32|ontology_enrichment_uberon_v019=UBERON:0007023;9.30e-10;114!UBERON:0002780;7.90e-07;41!UBERON:0001890;7.90e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.24e-38,114;UBERON:0002193,3.35e-35,108;UBERON:0002390,1.52e-34,98;UBERON:0003061,1.52e-34,98;UBERON:0002371,4.45e-32,76;UBERON:0002405,5.57e-32,93;UBERON:0001474,7.50e-28,82;UBERON:0004765,8.19e-26,90;UBERON:0001434,1.04e-21,100;UBERON:0003081,4.55e-19,203;UBERON:0002050,5.56e-16,564;UBERON:0000923,2.98e-15,560;UBERON:0010316,2.98e-15,560;UBERON:0005291,2.98e-15,560;UBERON:0006598,2.98e-15,560;UBERON:0010317,2.98e-15,560;UBERON:0002532,2.98e-15,560;UBERON:0005423,1.91e-14,581;UBERON:0000922,8.80e-14,592;UBERON:0001049,1.21e-10,56;UBERON:0005068,1.21e-10,56;UBERON:0006241,1.21e-10,56;UBERON:0007135,1.21e-10,56;UBERON:0000073,1.84e-09,53;UBERON:0002616,1.84e-09,53;UBERON:0002780,3.38e-09,41;UBERON:0001890,3.38e-09,41;UBERON:0003080,3.38e-09,41;UBERON:0006240,3.38e-09,41;UBERON:0010371,1.30e-08,104;UBERON:0000926,1.86e-07,315;UBERON:0004120,1.86e-07,315;UBERON:0006603,1.86e-07,315;UBERON:0003075,2.03e-07,82;UBERON:0007284,2.03e-07,82;UBERON:0001893,2.17e-07,34;UBERON:0003528,2.84e-07,34;UBERON:0002020,2.84e-07,34;UBERON:0002204,3.49e-07,167;UBERON:0002346,4.01e-07,86|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,0,0,0,0,0,0,0,0,0.125542639594803,0.458480434487708,0.0821005894499457,0.236132343941038,22.0283995035386,14.9693465257913,26.3187409637329,2.75826367343678,0.90361775633475,0.369754010166788,0,0,0,217.166200144496,204.956425314485,122.611141954456,17.9132379391939,8.42123531649347,16.2272607609538,57.1415078403689,50.6353764543005,58.2201746850759,205.002410550814,106.081315109631,125.431080212517,87.4584872659337,76.335890545672,80.8769226218961,502.63920251399,272.394536472375,280.332827250287,69.0849386121359,40.3901102085612,71.686791537982,671.241975969389,348.528923404638,526.174454532611,42.2209664238997,57.0466060797867,50.7207453133906,1304.20031839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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54453 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18750 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000484638,uc010gcv.1_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RIN2_5end | |||
|id=chr20:19915739..19915783,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.85e-33!42;CL:0002009!3.46e-32!65;CL:0000557!3.81e-32!71;CL:0000766!5.61e-32!76;CL:0002194!4.11e-31!63;CL:0000576!4.11e-31!63;CL:0000040!4.11e-31!63;CL:0000559!4.11e-31!63;CL:0000839!3.63e-30!70;CL:0000860!3.25e-29!45;CL:0000738!8.12e-17!140;CL:0000763!4.49e-16!112;CL:0000049!4.49e-16!112;CL:0002031!1.28e-14!124;CL:0002087!1.56e-14!119;CL:0000037!2.38e-09!172;CL:0000566!2.38e-09!172;CL:0002032!2.56e-08!165;CL:0000837!2.56e-08!165;CL:0002393!6.34e-08!9;CL:0002397!6.34e-08!9;CL:0000988!1.06e-07!182;CL:0000115!9.37e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.78e-29;33!CL:0002057;4.78e-29;33!CL:0000473;1.40e-28;39!CL:0000234;1.40e-28;39!CL:0000576;1.35e-24;48!CL:0000766;2.41e-19;69!CL:0000763;1.33e-07;100!CL:0002393;7.11e-07;6!CL:0002397;7.11e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.84e-45,48;CL:0000234,4.84e-45,48;CL:0002009,7.80e-41,61;CL:0000766,5.42e-40,72;CL:0000557,5.99e-40,67;CL:0000860,8.00e-40,42;CL:0002057,8.00e-40,42;CL:0002194,1.57e-39,59;CL:0000576,1.57e-39,59;CL:0000040,1.57e-39,59;CL:0000559,1.57e-39,59;CL:0000839,1.17e-37,66;CL:0000763,5.55e-21,108;CL:0000049,5.55e-21,108;CL:0000738,1.37e-18,136;CL:0002087,4.91e-16,115;CL:0002031,7.53e-16,120;CL:0000037,6.16e-11,168;CL:0002032,1.46e-09,161;CL:0000837,1.46e-09,161;CL:0002393,2.89e-09,9;CL:0002397,2.89e-09,9;CL:0000988,3.25e-09,177;CL:0000115,8.02e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002057;1.09e-28;42!CL:0000049;8.45e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.87e-38!115;UBERON:0002193!1.27e-29!112;UBERON:0002390!2.82e-28!102;UBERON:0003061!2.82e-28!102;UBERON:0002371!1.77e-25!80;UBERON:0001474!1.55e-21!86;UBERON:0002405!5.75e-21!115;UBERON:0004765!1.76e-18!101;UBERON:0001434!1.76e-18!101;UBERON:0000480!3.07e-15!626;UBERON:0000467!4.43e-15!625;UBERON:0003081!1.33e-13!216;UBERON:0000062!9.42e-13!511;UBERON:0002050!1.07e-12!605;UBERON:0005423!1.07e-12!605;UBERON:0000923!1.54e-12!604;UBERON:0005291!1.54e-12!604;UBERON:0006598!1.54e-12!604;UBERON:0002532!1.54e-12!604;UBERON:0000468!2.10e-12!659;UBERON:0000922!2.41e-12!612;UBERON:0001049!3.15e-12!57;UBERON:0005068!3.15e-12!57;UBERON:0006241!3.15e-12!57;UBERON:0007135!3.15e-12!57;UBERON:0003080!1.37e-10!42;UBERON:0002780!3.91e-10!41;UBERON:0001890!3.91e-10!41;UBERON:0006240!3.91e-10!41;UBERON:0002616!6.78e-09!59;UBERON:0001893!4.15e-08!34;UBERON:0002020!5.38e-08!34;UBERON:0003528!5.38e-08!34;UBERON:0003075!8.50e-08!86;UBERON:0007284!8.50e-08!86;UBERON:0002791!8.59e-08!33;UBERON:0000955!1.87e-07!69;UBERON:0006238!1.87e-07!69;UBERON:0002346!2.56e-07!90;UBERON:0001869!3.87e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;9.30e-10;114!UBERON:0002780;7.90e-07;41!UBERON:0001890;7.90e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.24e-38,114;UBERON:0002193,3.35e-35,108;UBERON:0002390,1.52e-34,98;UBERON:0003061,1.52e-34,98;UBERON:0002371,4.45e-32,76;UBERON:0002405,5.57e-32,93;UBERON:0001474,7.50e-28,82;UBERON:0004765,8.19e-26,90;UBERON:0001434,1.04e-21,100;UBERON:0003081,4.55e-19,203;UBERON:0002050,5.56e-16,564;UBERON:0000923,2.98e-15,560;UBERON:0010316,2.98e-15,560;UBERON:0005291,2.98e-15,560;UBERON:0006598,2.98e-15,560;UBERON:0010317,2.98e-15,560;UBERON:0002532,2.98e-15,560;UBERON:0005423,1.91e-14,581;UBERON:0000922,8.80e-14,592;UBERON:0001049,1.21e-10,56;UBERON:0005068,1.21e-10,56;UBERON:0006241,1.21e-10,56;UBERON:0007135,1.21e-10,56;UBERON:0000073,1.84e-09,53;UBERON:0002616,1.84e-09,53;UBERON:0002780,3.38e-09,41;UBERON:0001890,3.38e-09,41;UBERON:0003080,3.38e-09,41;UBERON:0006240,3.38e-09,41;UBERON:0010371,1.30e-08,104;UBERON:0000926,1.86e-07,315;UBERON:0004120,1.86e-07,315;UBERON:0006603,1.86e-07,315;UBERON:0003075,2.03e-07,82;UBERON:0007284,2.03e-07,82;UBERON:0001893,2.17e-07,34;UBERON:0003528,2.84e-07,34;UBERON:0002020,2.84e-07,34;UBERON:0002204,3.49e-07,167;UBERON:0002346,4.01e-07,86 | |||
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| |||
|short_description=p1@RIN2 | |||
}} |
Revision as of 07:41, 12 September 2013
Short description: | p1@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RIN2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000484638, uc010gcv.1_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.84e-45 | 48 |
phagocyte | 4.84e-45 | 48 |
macrophage dendritic cell progenitor | 7.80e-41 | 61 |
myeloid leukocyte | 5.42e-40 | 72 |
granulocyte monocyte progenitor cell | 5.99e-40 | 67 |
classical monocyte | 8.00e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.00e-40 | 42 |
monopoietic cell | 1.57e-39 | 59 |
monocyte | 1.57e-39 | 59 |
monoblast | 1.57e-39 | 59 |
promonocyte | 1.57e-39 | 59 |
myeloid lineage restricted progenitor cell | 1.17e-37 | 66 |
myeloid cell | 5.55e-21 | 108 |
common myeloid progenitor | 5.55e-21 | 108 |
leukocyte | 1.37e-18 | 136 |
nongranular leukocyte | 4.91e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 7.53e-16 | 120 |
hematopoietic stem cell | 6.16e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.46e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-09 | 161 |
intermediate monocyte | 2.89e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.89e-09 | 9 |
hematopoietic cell | 3.25e-09 | 177 |
endothelial cell | 8.02e-07 | 36 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.