FFCP PHASE1:Mm9::chr14:16271333..16271347,-: Difference between revisions
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{{FFCP|EntrezGene=218763|HGNC=|UniProt=Q8VCH9,Q543Z7|association_with_transcript=153bp_to_ENSMUST00000055211,NM_146052,uc007sgu.2_5end|description=CAGE_peak_3_at_Lrrc3b_5end|id=chr14:16271333..16271347,-|ontology_enrichment_celltype=CL:0000117!4.96e-08!23;CL:0000337!4.96e-08!23;CL:0000540!8.75e-08!33;CL:0000047!8.75e-08!33;CL:0000031!8.75e-08!33;CL:0000404!8.75e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,9.87e-23,23;CL:0000337,9.87e-23,23;CL:0000540,8.15e-15,33;CL:0000047,8.15e-15,33;CL:0000031,8.15e-15,33;CL:0000404,8.15e-15,33;CL:0000393,5.07e-12,39;CL:0000211,5.07e-12,39;CL:0002319,1.35e-10,43;CL:0000221,2.80e-10,44;CL:0000133,2.80e-10,44;CL:0002612,1.34e-08,3;CL:0002614,2.42e-08,3;CL:0002610,7.20e-08,3;CL:0002611,6.71e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.09e-13!73;UBERON:0005743!1.09e-13!73;UBERON:0000073!4.08e-13!75;UBERON:0001016!4.08e-13!75;UBERON:0001049!2.53e-11!52;UBERON:0005068!2.53e-11!52;UBERON:0006241!2.53e-11!52;UBERON:0007135!2.53e-11!52;UBERON:0002346!2.33e-10!71;UBERON:0003075!2.33e-10!71;UBERON:0007284!2.33e-10!71;UBERON:0000955!8.12e-10!50;UBERON:0006238!8.12e-10!50;UBERON:0002020!1.81e-09!34;UBERON:0002616!2.03e-09!49;UBERON:0004121!2.20e-09!102;UBERON:0000924!2.20e-09!102;UBERON:0006601!2.20e-09!102;UBERON:0000025!2.71e-09!114;UBERON:0004111!1.08e-08!122;UBERON:0000033!4.39e-08!63;UBERON:0003080!9.78e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.25e-25,54;UBERON:0001017,2.06e-22,73;UBERON:0001049,8.67e-22,52;UBERON:0005068,8.67e-22,52;UBERON:0006241,8.67e-22,52;UBERON:0007135,8.67e-22,52;UBERON:0001016,1.18e-21,75;UBERON:0002020,5.79e-21,34;UBERON:0010314,1.87e-18,92;UBERON:0002346,9.88e-17,64;UBERON:0003075,9.88e-17,64;UBERON:0007284,9.88e-17,64;UBERON:0002240,4.52e-16,6;UBERON:0005174,4.52e-16,6;UBERON:0001137,4.52e-16,6;UBERON:0004121,7.80e-16,95;UBERON:0000924,7.80e-16,95;UBERON:0006601,7.80e-16,95;UBERON:0010371,4.95e-14,73;UBERON:0003076,7.06e-14,12;UBERON:0003057,7.06e-14,12;UBERON:0001948,7.24e-14,5;UBERON:0002315,7.24e-14,5;UBERON:0000025,1.06e-13,114;UBERON:0002616,1.66e-12,46;UBERON:0004111,2.14e-12,122;UBERON:0000955,3.69e-12,47;UBERON:0006238,3.69e-12,47;UBERON:0003528,3.69e-12,29;UBERON:0002791,3.69e-12,29;UBERON:0001893,3.69e-12,29;UBERON:0002420,3.68e-11,8;UBERON:0007245,3.68e-11,8;UBERON:0010009,3.68e-11,8;UBERON:0010011,3.68e-11,8;UBERON:0000454,3.68e-11,8;UBERON:0003080,5.42e-11,40;UBERON:0002950,2.98e-10,4;UBERON:0001891,2.98e-10,4;UBERON:0009616,2.98e-10,4;UBERON:0010286,2.98e-10,4;UBERON:0002780,7.82e-10,39;UBERON:0001890,7.82e-10,39;UBERON:0006240,7.82e-10,39;UBERON:0002021,1.04e-08,10;UBERON:0000411,1.04e-08,10;UBERON:0001950,1.04e-08,10;UBERON:0002257,1.34e-08,3;UBERON:0003056,2.16e-08,49;UBERON:0002038,2.42e-08,3;UBERON:0009663,2.42e-08,3;UBERON:0009661,2.42e-08,3;UBERON:0000125,2.42e-08,3;UBERON:0002308,2.42e-08,3;UBERON:0004684,7.20e-08,3;UBERON:0002275,7.20e-08,3;UBERON:0002256,6.71e-07,2;UBERON:0000483,7.86e-07,174|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0.336093799142464,0,0,0,1.61853168687678,2.64495489636016,0.633831403506179,0,0,0,0,0,0,0,0,0,0,3.14216082844184,3.53389665522582,0.122490799214954,0.0958454710182364,0,1.10115880999389,1.40456071893706,1.38245879930619,2.2420668914133,1.9212405156506,0.52091337055676,1.95428099300967,1.12552522006336,2.29197371665215,2.94628585473668,2.56269025438385,1.1183966749518,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.517875767294343,0.445326417194474,0,0.608930956624282,0.691846491768175,0,0.470354828542819,0.251333182659351,0,0.289198713839823,0,0.161766849947409,0,0,0,3.80615036115011,3.56059401582874,0,0,0,0,1.04853447583376,1.37250180845588,0.753926112677186,1.04294592115366,0.767146371990992,1.45451631191692,0,0,0,0.505445516867349,0,0.130120442962704,0,0.180062129805349,0,0.136072998302656,0.12811372028485,0.281105173679186,0,0,0,0,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0.414251545071004,0,0.720248245844059,0.710234206755631,0.590292695242212,0.925602677324269,0.697601834251224,1.07309360559848,0.817357396570186,0.987359099480883,2.46251196118643,2.91847714365081,3.36259971078264,3.07370161407471,2.41571553768669,0.630869845692382,0.308713837137853,0,0,0,0.232236671860439,0.257734922644187,0,0,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0,0.228497025219458,0,0,0.193952487167626,0.49095073923223,0.189709611372772,0.147610147979602,0.31399745568275,0.493588655687202,0,0.166845105716094,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0,0.162964976442026,0.169745085775188,0.704070744865506,0.670025029767263,0.952174563544055,0.585400943573396,0.157635144106191,0,0.318909537314974,0.163863314715738,0.345369963731791,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:218763 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VCH9,uniprot:Q543Z7 | |||
|association_with_transcript=153bp_to_ENSMUST00000055211,NM_146052,uc007sgu.2_5end | |||
|cluster_id=chr14:16271333..16271347,- | |||
|description=CAGE_peak_3_at_Lrrc3b_5end | |||
|id=chr14:16271333..16271347,- | |||
|ontology_enrichment_celltype=CL:0000117!4.96e-08!23;CL:0000337!4.96e-08!23;CL:0000540!8.75e-08!33;CL:0000047!8.75e-08!33;CL:0000031!8.75e-08!33;CL:0000404!8.75e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.87e-23,23;CL:0000337,9.87e-23,23;CL:0000540,8.15e-15,33;CL:0000047,8.15e-15,33;CL:0000031,8.15e-15,33;CL:0000404,8.15e-15,33;CL:0000393,5.07e-12,39;CL:0000211,5.07e-12,39;CL:0002319,1.35e-10,43;CL:0000221,2.80e-10,44;CL:0000133,2.80e-10,44;CL:0002612,1.34e-08,3;CL:0002614,2.42e-08,3;CL:0002610,7.20e-08,3;CL:0002611,6.71e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.09e-13!73;UBERON:0005743!1.09e-13!73;UBERON:0000073!4.08e-13!75;UBERON:0001016!4.08e-13!75;UBERON:0001049!2.53e-11!52;UBERON:0005068!2.53e-11!52;UBERON:0006241!2.53e-11!52;UBERON:0007135!2.53e-11!52;UBERON:0002346!2.33e-10!71;UBERON:0003075!2.33e-10!71;UBERON:0007284!2.33e-10!71;UBERON:0000955!8.12e-10!50;UBERON:0006238!8.12e-10!50;UBERON:0002020!1.81e-09!34;UBERON:0002616!2.03e-09!49;UBERON:0004121!2.20e-09!102;UBERON:0000924!2.20e-09!102;UBERON:0006601!2.20e-09!102;UBERON:0000025!2.71e-09!114;UBERON:0004111!1.08e-08!122;UBERON:0000033!4.39e-08!63;UBERON:0003080!9.78e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.25e-25,54;UBERON:0001017,2.06e-22,73;UBERON:0001049,8.67e-22,52;UBERON:0005068,8.67e-22,52;UBERON:0006241,8.67e-22,52;UBERON:0007135,8.67e-22,52;UBERON:0001016,1.18e-21,75;UBERON:0002020,5.79e-21,34;UBERON:0010314,1.87e-18,92;UBERON:0002346,9.88e-17,64;UBERON:0003075,9.88e-17,64;UBERON:0007284,9.88e-17,64;UBERON:0002240,4.52e-16,6;UBERON:0005174,4.52e-16,6;UBERON:0001137,4.52e-16,6;UBERON:0004121,7.80e-16,95;UBERON:0000924,7.80e-16,95;UBERON:0006601,7.80e-16,95;UBERON:0010371,4.95e-14,73;UBERON:0003076,7.06e-14,12;UBERON:0003057,7.06e-14,12;UBERON:0001948,7.24e-14,5;UBERON:0002315,7.24e-14,5;UBERON:0000025,1.06e-13,114;UBERON:0002616,1.66e-12,46;UBERON:0004111,2.14e-12,122;UBERON:0000955,3.69e-12,47;UBERON:0006238,3.69e-12,47;UBERON:0003528,3.69e-12,29;UBERON:0002791,3.69e-12,29;UBERON:0001893,3.69e-12,29;UBERON:0002420,3.68e-11,8;UBERON:0007245,3.68e-11,8;UBERON:0010009,3.68e-11,8;UBERON:0010011,3.68e-11,8;UBERON:0000454,3.68e-11,8;UBERON:0003080,5.42e-11,40;UBERON:0002950,2.98e-10,4;UBERON:0001891,2.98e-10,4;UBERON:0009616,2.98e-10,4;UBERON:0010286,2.98e-10,4;UBERON:0002780,7.82e-10,39;UBERON:0001890,7.82e-10,39;UBERON:0006240,7.82e-10,39;UBERON:0002021,1.04e-08,10;UBERON:0000411,1.04e-08,10;UBERON:0001950,1.04e-08,10;UBERON:0002257,1.34e-08,3;UBERON:0003056,2.16e-08,49;UBERON:0002038,2.42e-08,3;UBERON:0009663,2.42e-08,3;UBERON:0009661,2.42e-08,3;UBERON:0000125,2.42e-08,3;UBERON:0002308,2.42e-08,3;UBERON:0004684,7.20e-08,3;UBERON:0002275,7.20e-08,3;UBERON:0002256,6.71e-07,2;UBERON:0000483,7.86e-07,174 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0.336093799142464,0,0,0,1.61853168687678,2.64495489636016,0.633831403506179,0,0,0,0,0,0,0,0,0,0,3.14216082844184,3.53389665522582,0.122490799214954,0.0958454710182364,0,1.10115880999389,1.40456071893706,1.38245879930619,2.2420668914133,1.9212405156506,0.52091337055676,1.95428099300967,1.12552522006336,2.29197371665215,2.94628585473668,2.56269025438385,1.1183966749518,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0.517875767294343,0.445326417194474,0,0.608930956624282,0.691846491768175,0,0.470354828542819,0.251333182659351,0,0.289198713839823,0,0.161766849947409,0,0,0,3.80615036115011,3.56059401582874,0,0,0,0,1.04853447583376,1.37250180845588,0.753926112677186,1.04294592115366,0.767146371990992,1.45451631191692,0,0,0,0.505445516867349,0,0.130120442962704,0,0.180062129805349,0,0.136072998302656,0.12811372028485,0.281105173679186,0,0,0,0,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0.414251545071004,0,0.720248245844059,0.710234206755631,0.590292695242212,0.925602677324269,0.697601834251224,1.07309360559848,0.817357396570186,0.987359099480883,2.46251196118643,2.91847714365081,3.36259971078264,3.07370161407471,2.41571553768669,0.630869845692382,0.308713837137853,0,0,0,0.232236671860439,0.257734922644187,0,0,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0,0.228497025219458,0,0,0.193952487167626,0.49095073923223,0.189709611372772,0.147610147979602,0.31399745568275,0.493588655687202,0,0.166845105716094,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0,0.162964976442026,0.169745085775188,0.704070744865506,0.670025029767263,0.952174563544055,0.585400943573396,0.157635144106191,0,0.318909537314974,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0.321101179975584,0.35163505977661,0,0.504941854408746,0.94652465824877,0,0.430846795465598,0,0,0,0.809621403349789,0.292255857911312,0.790575555893047,0.642642632843614,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0,0.129358683782755,0.643011105094777,0.354680467284547,0.535106452806212,0.493647061806363,0,0,0.21183207086382,0.220528398054962,0,0,0.0603129249281559,0,0,0,1.48340241608408,0,0.412773735926445,0,0.188368457004691,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0.418176592028937,0.218362563746178,0,0.330613822901344,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0,0,0.104859344425711,0,0,0.316011120628178,0,0,0.129920822977795,0,0,0,0.443068581523732,0.201932899896295,0.15241361331,0,0.194915761479505,0,0.233753804363138,0,0,0,0,0,0.375364950902364,0,0,0,0.564751842617067,1.38097570952153,3.43737308063638,0.68741272937475,0,1.5107877947794,1.35004500046361,1.35096360967266,0.453142408984205,1.55328093525546,0,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.367687016900028,0,0.206035057238894,0.962757628775446,0.252697211763798,0.50695859978048,0.377252682772152,0.468207537349412,0.0640251524048693,0.287177344778066,0,0.347652977834566,0.38581844092741,0.412085900803307,0.294397840268795,1.02860775715625,0.532427418478012,0,0.290692833264657,0.282328141245992,0.338458431566706,0.548783918618318,0.263069711437843,0,0,0.474540072496697,0.492522411877817,0.409231043169689,0.619747364743864,0.192906610981141,0.249810577937946,0.233931608445408,0.644613162144895,0.191288332068843,0.882365676478062,0.463735671240843 | |||
|short_description=p3@Lrrc3b | |||
}} |
Revision as of 01:48, 4 August 2015
Short description: | p3@Lrrc3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrc3b_5end |
Coexpression cluster: | NA |
Association with transcript: | 153bp_to_ENSMUST00000055211, NM_146052, uc007sgu.2_5end |
EntrezGene: | 218763 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.87e-23 | 23 |
neuroblast (sensu Vertebrata) | 9.87e-23 | 23 |
neuron | 8.15e-15 | 33 |
neuronal stem cell | 8.15e-15 | 33 |
neuroblast | 8.15e-15 | 33 |
electrically signaling cell | 8.15e-15 | 33 |
electrically responsive cell | 5.07e-12 | 39 |
electrically active cell | 5.07e-12 | 39 |
neural cell | 1.35e-10 | 43 |
ectodermal cell | 2.80e-10 | 44 |
neurectodermal cell | 2.80e-10 | 44 |
neuron of the ventral spinal cord | 1.34e-08 | 3 |
neuron of the substantia nigra | 2.42e-08 | 3 |
raphe nuclei neuron | 7.20e-08 | 3 |
neuron of the dorsal spinal cord | 6.71e-07 | 2 |