Personal tools

Coexpression cluster:C3368: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 9: Line 9:
|tfbs_overrepresentation=0.147255,0.0586687,0.00192761,0.0477154,0.00156205,0.0460856,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.00606063,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.00424558,0.0108656,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00129531,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.0064353,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.000888001,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.0235519,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0124566,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.00542817,0.176912,0.00424238,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.013844,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.00469088,0.00708381,0.0115024,0.273479,0.00679439,0.0400322,0.127369,0.0403542,0.312091,0.0172085,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.00595679,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.00624688,0.0893019,0.060398,0.0308319,0.0606036,0.000471598,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.00564514,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.00183069,0.0108418,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.0381183,0.014161,0.214803,0.182472,0.0695582,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.0223286,0.00386209,0.0380459,0.130174,0.584917,0.00909613,0.0199061,0.019623,0.0101922,0.0986134,0.000314554,0.335423,0.0185583,0.0376513,0.118991,0.373681,0.309233,0.49143,0.330703,0.0146881,0.329568,0.042539,0.0724671,0.0408801,0.00531795,0.000206884,0.0921263,0.0582602,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.0821552,0.025356,0.000107655,0.528324,0.000977524,0.0792797,0.0173702,0.00475652,0.00335333,0.276829,0.301787,0.481778,0.316882,0.223503,0.0340949,0.0146955,0.283727,0.0557438,0.0567394,0.0474194,0.120054,0.0563639,0.102333,0.292835,0.137839,0.439556,0.373868,0.056723,0.0154652,0.017744,0.000284204,0.00042093,0.161148,0.0419647,0.0304678,0.185661,0.346319,0.179399,0.270984,0.0772647,0.0340542,0.000896465,0.0389686,0.248634,0.0439966,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.00243366,0.000729888,0.0583074,0.0169683,0.305671,0.188159,0.551561,0.120021,0.218623,0.312808,0.032738,0.0451077,0.0747529,0.0284893,0.000112408,0.589326,0.154921,0.294698,0.34331,0.138202,0.289204,0.327108,2.73928e-05,0.278044,0.0015747,0.428671,0.228096,0.336314,0.19763,0.0129079,0.00172609,0.104858,0.0293525,0.420626,0.516462,0.311758,0.335105,0.144809,0.145539,0.385517,0.376191,0.0224279,0.0247309,0.252232,0.152681,0.0465712,0.137098,0.259235,0.00952201,0.0985856,0.546222,0.293698,0.0450006,0.343734,0.306556,0.305777,0.2348,0.0340602,0.00100376,0.284629,0.262537,0.0741332,0.226257,0.016014,0.41707,0.0760312,0.000474832,0.00320894,0.206222,0.03988,0.0905337,0.113671,0.269226,0.339277,0.0014397,0.0439467,0.141758,0.455379,0.00680512,0.159617,0.238587,0.0119179,0.0293409,0.189515,0.0891382,0.0595618,0.171389,0.0033863,0.347298,0.0439245,0.0699395,0.00431743,0.404569,0.0204872,0.262389,0.0562865,0.0697683,0.0556835,0.0198561,0.0779981,0.0575676,0.144322,0.0270501,0.203656,0.116981,0.0214618,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0129363,0.0179103,0.303939,0.279795,0.0886747,0.0464827,0.0152726,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.0377931,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.00330134,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.00211059,0.0394698,0.0596469,0.00236266,0.122476,0.108872,0.00628729,0.0376172,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.0105143,0.167267,0.140622,0.0889592,0.309588,0.0458479,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.0306206,0.00327218,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.0465298,0.057571,0.047591,0.0899568,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.00102956,0.000919297,0.0611073,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.0195983,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.000561466,0.15063,0.0973823,0.15503,0.170295,0.00141547,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.0384217,0.0339656,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.161789,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.0170505,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.103051,0.36927,0.449036,0.407369,0.231447,0.0455669,0.115047,0.0116789,0.10748,0.00327292,0.197484,0.396996,0.36145,0.406019,0.00150864,0.580441,0.276075,0.11074,0.0100497,0.390366,0.48809,0.50058,0.443185,0.522904,0.00567172,1.04164e-05,0.227104,0.518585,6.55614e-05,0.38649,0.284625,0.504757,0.192225,0.000415039,0.28907,0.164197,0.128922,0.287881,0.0556235,0.478174,0.0642229,0.468444,0.258219,0.119142,0.243383,0.000171205,0.390974,7.41696e-05,0.00120937,0.161598,1.54935e-05,0.021206,0.150692,4.65435e-05,0.0805771,0.000199981,0.138234,0.0201095,0.000558506,0.000852086,0.20342,0.200493,0.0227499,0.300504,0.25656,0.425963,0.349197,0.383291,0.0128729,0.141318,0.0997241,0.0961477,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.562405,0.0556238,0.181415,0.282286,0.00465874,0.616388,0.01635,0.165147,0.322213,0.0234043,0.000885969,0.0700181,0.387276,0.522605,0.0816402,0.0433137,0.222037,0.416621,0.10205,0.0252635,0.000454034,0.579431,0.204817,0.00340294,0.138871,0.00105709,0.0147755,0.19783,0.0833851,0.316453,0.140384,0.0163316,0.0628556,0.373557,0.0393909,0.0980968,0.0111982,0.534741,0.0140668,0.363192,0.236011,0.203486,0.0413386,0.0816179,0.4466,0.351067,0.275347,0.0830022,0.0524515,0.00285094,0.371414,0.30666,0.303709,0.00533663,0.386538,0.159081,0.250964,0.0131557,0.457886,0.0344603,0.220231,0.159791,0.196976,0.191517,0.463751,0.0145214,0.307334,0.127092,0.283463,0.0517073,0.0272975,0.0932845,0.273281,0.0780405,0.00436817,0.0133102,0.47795,0.359231,0.339729,0.0209984,0.0153645,0.387069,0.332774,0.52832,0.0502872,0.0193657,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.036838,0.188263,0.0719199,0.264884,0.162568,0.00135583,0.163057,0.0260582,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.012591,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.00231953,0.20847,0.00394192,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.0273485,0.246105,0.173026,0.200432,0.139785,0.0208458,0.240478,0.156465,0.13108,0.036274,0.222798,0.0157468,0.0166394,0.0969345,0.00162178,0.0541163,0.280943,0.218161,0.0822373,9.03667e-05,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.0056723,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.263159,0.255956,0.0215087,0.0280973,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.00501043,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.0203812,0.190993,0.0440463,0.00480369,0.0342254,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.000158246,0.0859274,0.056548,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.000238286,0.0228361,0.361435
|tfbs_overrepresentation=0.147255,0.0586687,0.00192761,0.0477154,0.00156205,0.0460856,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.00606063,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.00424558,0.0108656,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00129531,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.0064353,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.000888001,0.0126543,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.0235519,0.0154619,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0124566,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.00542817,0.176912,0.00424238,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.013844,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.00469088,0.00708381,0.0115024,0.273479,0.00679439,0.0400322,0.127369,0.0403542,0.312091,0.0172085,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.00595679,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.00624688,0.0893019,0.060398,0.0308319,0.0606036,0.000471598,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.00564514,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.00183069,0.0108418,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.0381183,0.014161,0.214803,0.182472,0.0695582,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.0223286,0.00386209,0.0380459,0.130174,0.584917,0.00909613,0.0199061,0.019623,0.0101922,0.0986134,0.000314554,0.335423,0.0185583,0.0376513,0.118991,0.373681,0.309233,0.49143,0.330703,0.0146881,0.329568,0.042539,0.0724671,0.0408801,0.00531795,0.000206884,0.0921263,0.0582602,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.0821552,0.025356,0.000107655,0.528324,0.000977524,0.0792797,0.0173702,0.00475652,0.00335333,0.276829,0.301787,0.481778,0.316882,0.223503,0.0340949,0.0146955,0.283727,0.0557438,0.0567394,0.0474194,0.120054,0.0563639,0.102333,0.292835,0.137839,0.439556,0.373868,0.056723,0.0154652,0.017744,0.000284204,0.00042093,0.161148,0.0419647,0.0304678,0.185661,0.346319,0.179399,0.270984,0.0772647,0.0340542,0.000896465,0.0389686,0.248634,0.0439966,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.00243366,0.000729888,0.0583074,0.0169683,0.305671,0.188159,0.551561,0.120021,0.218623,0.312808,0.032738,0.0451077,0.0747529,0.0284893,0.000112408,0.589326,0.154921,0.294698,0.34331,0.138202,0.289204,0.327108,2.73928e-05,0.278044,0.0015747,0.428671,0.228096,0.336314,0.19763,0.0129079,0.00172609,0.104858,0.0293525,0.420626,0.516462,0.311758,0.335105,0.144809,0.145539,0.385517,0.376191,0.0224279,0.0247309,0.252232,0.152681,0.0465712,0.137098,0.259235,0.00952201,0.0985856,0.546222,0.293698,0.0450006,0.343734,0.306556,0.305777,0.2348,0.0340602,0.00100376,0.284629,0.262537,0.0741332,0.226257,0.016014,0.41707,0.0760312,0.000474832,0.00320894,0.206222,0.03988,0.0905337,0.113671,0.269226,0.339277,0.0014397,0.0439467,0.141758,0.455379,0.00680512,0.159617,0.238587,0.0119179,0.0293409,0.189515,0.0891382,0.0595618,0.171389,0.0033863,0.347298,0.0439245,0.0699395,0.00431743,0.404569,0.0204872,0.262389,0.0562865,0.0697683,0.0556835,0.0198561,0.0779981,0.0575676,0.144322,0.0270501,0.203656,0.116981,0.0214618,0.191777,0.111931,0.28934,0.0435386,0.0515253,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0129363,0.0179103,0.303939,0.279795,0.0886747,0.0464827,0.0152726,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.0684384,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.0966069,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.0443426,0.0377931,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.00330134,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.00211059,0.0394698,0.0596469,0.00236266,0.122476,0.108872,0.00628729,0.0376172,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.00836526,0.147698,0.0105143,0.167267,0.140622,0.0889592,0.309588,0.0458479,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.0306206,0.00327218,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.0465298,0.057571,0.047591,0.0899568,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.00102956,0.000919297,0.0611073,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.0195983,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.000561466,0.15063,0.0973823,0.15503,0.170295,0.00141547,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.0384217,0.0339656,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.0546539,0.161789,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.0170505,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.103051,0.36927,0.449036,0.407369,0.231447,0.0455669,0.115047,0.0116789,0.10748,0.00327292,0.197484,0.396996,0.36145,0.406019,0.00150864,0.580441,0.276075,0.11074,0.0100497,0.390366,0.48809,0.50058,0.443185,0.522904,0.00567172,1.04164e-05,0.227104,0.518585,6.55614e-05,0.38649,0.284625,0.504757,0.192225,0.000415039,0.28907,0.164197,0.128922,0.287881,0.0556235,0.478174,0.0642229,0.468444,0.258219,0.119142,0.243383,0.000171205,0.390974,7.41696e-05,0.00120937,0.161598,1.54935e-05,0.021206,0.150692,4.65435e-05,0.0805771,0.000199981,0.138234,0.0201095,0.000558506,0.000852086,0.20342,0.200493,0.0227499,0.300504,0.25656,0.425963,0.349197,0.383291,0.0128729,0.141318,0.0997241,0.0961477,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.562405,0.0556238,0.181415,0.282286,0.00465874,0.616388,0.01635,0.165147,0.322213,0.0234043,0.000885969,0.0700181,0.387276,0.522605,0.0816402,0.0433137,0.222037,0.416621,0.10205,0.0252635,0.000454034,0.579431,0.204817,0.00340294,0.138871,0.00105709,0.0147755,0.19783,0.0833851,0.316453,0.140384,0.0163316,0.0628556,0.373557,0.0393909,0.0980968,0.0111982,0.534741,0.0140668,0.363192,0.236011,0.203486,0.0413386,0.0816179,0.4466,0.351067,0.275347,0.0830022,0.0524515,0.00285094,0.371414,0.30666,0.303709,0.00533663,0.386538,0.159081,0.250964,0.0131557,0.457886,0.0344603,0.220231,0.159791,0.196976,0.191517,0.463751,0.0145214,0.307334,0.127092,0.283463,0.0517073,0.0272975,0.0932845,0.273281,0.0780405,0.00436817,0.0133102,0.47795,0.359231,0.339729,0.0209984,0.0153645,0.387069,0.332774,0.52832,0.0502872,0.0193657,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.036838,0.188263,0.0719199,0.264884,0.162568,0.00135583,0.163057,0.0260582,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.012591,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.00231953,0.20847,0.00394192,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.0377094,0.203781,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.0273485,0.246105,0.173026,0.200432,0.139785,0.0208458,0.240478,0.156465,0.13108,0.036274,0.222798,0.0157468,0.0166394,0.0969345,0.00162178,0.0541163,0.280943,0.218161,0.0822373,9.03667e-05,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.0056723,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.263159,0.255956,0.0215087,0.0280973,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.00501043,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.0203812,0.190993,0.0440463,0.00480369,0.0342254,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.000158246,0.0859274,0.056548,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.000238286,0.0228361,0.361435
|tfbs_overrepresentation_for_novel_motifs=0.699513,1.40091,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,1.18351,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.680949,0.845342,0.635379,0.743951,1.00973,1.85641,0.842925,0.645155,1.00813,0.795576,1.21459,1.3235,0.439574,1.46099,0.843849,0.596053,0.855276,0.567465,0.469078,0.598234,0.777097,0.718382,0.63803,0.901413,0.726632,2.16194,0.808003,0.69206,0.645308,1.02504,0.951993,0.893117,1.29475,1.45259,0.928548,0.650353,0.892517,1.0078,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,0.414196,1.02656,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.507157,0.82001,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,1.54991,0.560075,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.188952,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,2.2314,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.974093,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,1.3017,0.936473,0.265282
|tfbs_overrepresentation_for_novel_motifs=0.699513,1.40091,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,1.18351,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.680949,0.845342,0.635379,0.743951,1.00973,1.85641,0.842925,0.645155,1.00813,0.795576,1.21459,1.3235,0.439574,1.46099,0.843849,0.596053,0.855276,0.567465,0.469078,0.598234,0.777097,0.718382,0.63803,0.901413,0.726632,2.16194,0.808003,0.69206,0.645308,1.02504,0.951993,0.893117,1.29475,1.45259,0.928548,0.650353,0.892517,1.0078,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,0.414196,1.02656,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.507157,0.82001,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,1.54991,0.560075,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.188952,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,2.2314,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.974093,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,1.3017,0.936473,0.265282
|tfbs_overrepresentation_jaspar=MA0003.1;1.0927,MA0004.1;0.826076,MA0006.1;0.639288,MA0007.1;0.804807,MA0009.1;1.3275,MA0014.1;0.118426,MA0017.1;0.686276,MA0019.1;0.990656,MA0024.1;1.21731,MA0025.1;1.46617,MA0027.1;2.95767,MA0028.1;0.658629,MA0029.1;1.23771,MA0030.1;1.22561,MA0031.1;1.15713,MA0038.1;0.94098,MA0040.1;1.24388,MA0041.1;0.847069,MA0042.1;0.810843,MA0043.1;1.32783,MA0046.1;1.31611,MA0048.1;0.341392,MA0050.1;0.81185,MA0051.1;0.936307,MA0052.1;1.24796,MA0055.1;0.190716,MA0056.1;0,MA0057.1;0.886807,MA0058.1;0.716037,MA0059.1;0.714521,MA0060.1;0.492218,MA0061.1;0.456531,MA0063.1;0,MA0066.1;0.941452,MA0067.1;1.65513,MA0068.1;0.405474,MA0069.1;1.31207,MA0070.1;1.30033,MA0071.1;0.897953,MA0072.1;1.29561,MA0073.1;1.36698,MA0074.1;0.935474,MA0076.1;0.734647,MA0077.1;1.28751,MA0078.1;1.04495,MA0081.1;0.714712,MA0083.1;1.33535,MA0084.1;1.84562,MA0087.1;1.29304,MA0088.1;0.257905,MA0089.1;0,MA0090.1;0.751469,MA0091.1;0.829044,MA0092.1;0.785956,MA0093.1;0.642957,MA0095.1;0,MA0098.1;0,MA0100.1;0.956299,MA0101.1;0.646932,MA0103.1;0.628063,MA0105.1;0.31555,MA0106.1;0.986396,MA0107.1;0.556367,MA0108.2;1.15387,MA0109.1;0,MA0111.1;0.767139,MA0113.1;1.00436,MA0114.1;0.549955,MA0115.1;1.57693,MA0116.1;0.560723,MA0117.1;1.36676,MA0119.1;0.695578,MA0122.1;1.39371,MA0124.1;1.53432,MA0125.1;1.44766,MA0130.1;0,MA0131.1;1.06461,MA0132.1;0,MA0133.1;0,MA0135.1;1.35921,MA0136.1;0.948776,MA0139.1;1.12079,MA0140.1;0.894983,MA0141.1;0.712476,MA0142.1;1.12317,MA0143.1;1.00455,MA0144.1;0.531867,MA0145.1;0.752137,MA0146.1;0.107247,MA0147.1;0.565108,MA0148.1;0.854239,MA0149.1;0.884158,MA0062.2;1.9924,MA0035.2;0.894194,MA0039.2;1.62945,MA0138.2;1.04628,MA0002.2;0.476938,MA0137.2;0.666381,MA0104.2;0.491226,MA0047.2;0.973066,MA0112.2;0.264678,MA0065.2;0.277623,MA0150.1;0.744617,MA0151.1;0,MA0152.1;0.902317,MA0153.1;1.43021,MA0154.1;1.51687,MA0155.1;0.711948,MA0156.1;0.669101,MA0157.1;1.09377,MA0158.1;0,MA0159.1;0.565904,MA0160.1;0.871361,MA0161.1;0,MA0162.1;1.43223,MA0163.1;0.776149,MA0164.1;1.01792,MA0080.2;1.55139,MA0018.2;0.987913,MA0099.2;0.902716,MA0079.2;5.72079,MA0102.2;1.88331,MA0258.1;0.519674,MA0259.1;0.575594,MA0442.1;0
}}
}}

Revision as of 21:19, 22 January 2013


Full id: C3368_alveolar_occipital_paracentral_parietal_postcentral_medial_temporal



Phase1 CAGE Peaks

Hg19::chr13:36429787..36429812,-p1@DCLK1
Hg19::chr1:203096831..203096864,+p2@ADORA1
Hg19::chr1:203096870..203096885,+p3@ADORA1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001610A1 adenosine receptor activity, G-protein coupled0.011089950968804
GO:0016192vesicle-mediated transport0.011089950968804
GO:0001609adenosine receptor activity, G-protein coupled0.011089950968804
GO:0007399nervous system development0.011089950968804
GO:0005887integral to plasma membrane0.0177324078786797
GO:0031226intrinsic to plasma membrane0.0177324078786797
GO:0008624induction of apoptosis by extracellular signals0.0177324078786797
GO:0048731system development0.0177324078786797
GO:0016197endosome transport0.0177324078786797
GO:0006909phagocytosis0.0177324078786797
GO:0001608nucleotide receptor activity, G-protein coupled0.0177324078786797
GO:0045028purinergic nucleotide receptor activity, G-protein coupled0.0177324078786797
GO:0016502nucleotide receptor activity0.0177324078786797
GO:0001614purinergic nucleotide receptor activity0.0177324078786797
GO:0048869cellular developmental process0.0177324078786797
GO:0030154cell differentiation0.0177324078786797
GO:0048856anatomical structure development0.0204801779582045
GO:0044459plasma membrane part0.0240938358907973
GO:0007275multicellular organismal development0.0240938358907973
GO:0016043cellular component organization and biogenesis0.0421810143207353
GO:0032502developmental process0.0421810143207353
GO:0005057receptor signaling protein activity0.0421810143207353
GO:0010324membrane invagination0.0421810143207353
GO:0006897endocytosis0.0421810143207353
GO:0060089molecular transducer activity0.0421810143207353
GO:0004871signal transducer activity0.0421810143207353
GO:0006917induction of apoptosis0.0421810143207353
GO:0012502induction of programmed cell death0.0421810143207353
GO:0005886plasma membrane0.0421810143207353
GO:0032501multicellular organismal process0.0421810143207353
GO:0007417central nervous system development0.0432329278501302
GO:0006810transport0.0432329278501302
GO:0051234establishment of localization0.0432329278501302
GO:0043065positive regulation of apoptosis0.0432329278501302
GO:0043068positive regulation of programmed cell death0.0432329278501302
GO:0016044membrane organization and biogenesis0.0457762186162076
GO:0006954inflammatory response0.0457762186162076
GO:0051179localization0.0457762186162076



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
neural cell1.31e-0825
Uber Anatomy
Ontology termp-valuen
central nervous system8.15e-4681
nervous system5.87e-4189
neural tube1.24e-4056
neural rod1.24e-4056
future spinal cord1.24e-4056
neural keel1.24e-4056
regional part of nervous system1.73e-3853
regional part of brain1.73e-3853
brain2.87e-3768
future brain2.87e-3768
neural plate5.31e-3582
presumptive neural plate5.31e-3582
neurectoderm5.51e-3286
regional part of forebrain6.60e-3141
forebrain6.60e-3141
anterior neural tube6.60e-3141
future forebrain6.60e-3141
telencephalon2.37e-2734
brain grey matter8.46e-2734
gray matter8.46e-2734
adult organism2.42e-26114
cerebral hemisphere3.70e-2632
pre-chordal neural plate5.41e-2661
regional part of telencephalon1.01e-2532
structure with developmental contribution from neural crest2.25e-24132
ecto-epithelium4.51e-24104
cerebral cortex3.00e-2125
pallium3.00e-2125
ectoderm-derived structure1.96e-20171
ectoderm1.96e-20171
presumptive ectoderm1.96e-20171
regional part of cerebral cortex7.69e-1922
neocortex3.26e-1720
organ system subdivision7.85e-14223
organ part5.09e-11218
posterior neural tube1.13e-1015
chordal neural plate1.13e-1015
anatomical cluster5.52e-10373
tube7.15e-10192
organ3.20e-09503
segmental subdivision of hindbrain1.07e-0812
hindbrain1.07e-0812
presumptive hindbrain1.07e-0812
segmental subdivision of nervous system1.07e-0713
basal ganglion1.33e-079
nuclear complex of neuraxis1.33e-079
aggregate regional part of brain1.33e-079
collection of basal ganglia1.33e-079
cerebral subcortex1.33e-079
multi-cellular organism1.37e-07656
epithelium1.57e-07306
cell layer3.63e-07309
multi-tissue structure4.09e-07342
regional part of metencephalon4.83e-079
metencephalon4.83e-079
future metencephalon4.83e-079
neural nucleus5.06e-079
nucleus of brain5.06e-079
anatomical conduit7.15e-07240
gyrus9.05e-076


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.0927
MA0004.10.826076
MA0006.10.639288
MA0007.10.804807
MA0009.11.3275
MA0014.10.118426
MA0017.10.686276
MA0019.10.990656
MA0024.11.21731
MA0025.11.46617
MA0027.12.95767
MA0028.10.658629
MA0029.11.23771
MA0030.11.22561
MA0031.11.15713
MA0038.10.94098
MA0040.11.24388
MA0041.10.847069
MA0042.10.810843
MA0043.11.32783
MA0046.11.31611
MA0048.10.341392
MA0050.10.81185
MA0051.10.936307
MA0052.11.24796
MA0055.10.190716
MA0056.10
MA0057.10.886807
MA0058.10.716037
MA0059.10.714521
MA0060.10.492218
MA0061.10.456531
MA0063.10
MA0066.10.941452
MA0067.11.65513
MA0068.10.405474
MA0069.11.31207
MA0070.11.30033
MA0071.10.897953
MA0072.11.29561
MA0073.11.36698
MA0074.10.935474
MA0076.10.734647
MA0077.11.28751
MA0078.11.04495
MA0081.10.714712
MA0083.11.33535
MA0084.11.84562
MA0087.11.29304
MA0088.10.257905
MA0089.10
MA0090.10.751469
MA0091.10.829044
MA0092.10.785956
MA0093.10.642957
MA0095.10
MA0098.10
MA0100.10.956299
MA0101.10.646932
MA0103.10.628063
MA0105.10.31555
MA0106.10.986396
MA0107.10.556367
MA0108.21.15387
MA0109.10
MA0111.10.767139
MA0113.11.00436
MA0114.10.549955
MA0115.11.57693
MA0116.10.560723
MA0117.11.36676
MA0119.10.695578
MA0122.11.39371
MA0124.11.53432
MA0125.11.44766
MA0130.10
MA0131.11.06461
MA0132.10
MA0133.10
MA0135.11.35921
MA0136.10.948776
MA0139.11.12079
MA0140.10.894983
MA0141.10.712476
MA0142.11.12317
MA0143.11.00455
MA0144.10.531867
MA0145.10.752137
MA0146.10.107247
MA0147.10.565108
MA0148.10.854239
MA0149.10.884158
MA0062.21.9924
MA0035.20.894194
MA0039.21.62945
MA0138.21.04628
MA0002.20.476938
MA0137.20.666381
MA0104.20.491226
MA0047.20.973066
MA0112.20.264678
MA0065.20.277623
MA0150.10.744617
MA0151.10
MA0152.10.902317
MA0153.11.43021
MA0154.11.51687
MA0155.10.711948
MA0156.10.669101
MA0157.11.09377
MA0158.10
MA0159.10.565904
MA0160.10.871361
MA0161.10
MA0162.11.43223
MA0163.10.776149
MA0164.11.01792
MA0080.21.55139
MA0018.20.987913
MA0099.20.902716
MA0079.25.72079
MA0102.21.88331
MA0258.10.519674
MA0259.10.575594
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3368&oldid=2571879"