FFCP PHASE1:Hg19::chr19:51071705..51071732,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=94030|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25042|TSSclassifier=N|UniProt=Q9NT99,F5GYR9|association_with_transcript=-403bp_to_ENST00000389201,ENST00000535879,NM_001080457,uc002pss.2_5end|coexpression_cluster_id=C10|description=CAGE_peak_2_at_LRRC4B_5end|id=chr19:51071705..51071732,-|ontology_enrichment_celltype=CL:0000047!4.76e-07!8|ontology_enrichment_celltype_v019=CL:0002322;4.51e-07;5|ontology_enrichment_celltype_v019_2=CL:0000047,5.97e-08,8;CL:0002322,5.32e-07,5|ontology_enrichment_development_v019=UBERON:0006601;2.38e-12;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.14e-43!82;UBERON:0005743!4.77e-43!86;UBERON:0000073!6.16e-42!94;UBERON:0001016!6.16e-42!94;UBERON:0001049!3.72e-39!57;UBERON:0005068!3.72e-39!57;UBERON:0006241!3.72e-39!57;UBERON:0007135!3.72e-39!57;UBERON:0002346!6.53e-37!90;UBERON:0007023!1.28e-34!115;UBERON:0003075!5.33e-34!86;UBERON:0007284!5.33e-34!86;UBERON:0000955!7.42e-34!69;UBERON:0006238!7.42e-34!69;UBERON:0002780!1.49e-32!41;UBERON:0001890!1.49e-32!41;UBERON:0006240!1.49e-32!41;UBERON:0002616!2.16e-32!59;UBERON:0003080!2.10e-31!42;UBERON:0002020!1.07e-29!34;UBERON:0003528!1.07e-29!34;UBERON:0001893!1.39e-29!34;UBERON:0001869!9.16e-29!32;UBERON:0002791!1.24e-28!33;UBERON:0000924!1.89e-26!173;UBERON:0006601!1.89e-26!173;UBERON:0002619!2.62e-24!22;UBERON:0004121!3.63e-24!169;UBERON:0003056!4.68e-24!61;UBERON:0000956!1.05e-23!25;UBERON:0000203!1.05e-23!25;UBERON:0001950!2.08e-22!20;UBERON:0000153!4.16e-21!129;UBERON:0007811!4.16e-21!129;UBERON:0000033!6.38e-21!123;UBERON:0000025!6.52e-12!194;UBERON:0000481!2.42e-11!347;UBERON:0000922!2.58e-11!612;UBERON:0001871!1.03e-09!7;UBERON:0004111!1.26e-09!241;UBERON:0003076!6.80e-09!15;UBERON:0003057!6.80e-09!15;UBERON:0002050!1.10e-08!605;UBERON:0005423!1.10e-08!605;UBERON:0000923!2.81e-08!604;UBERON:0005291!2.81e-08!604;UBERON:0006598!2.81e-08!604;UBERON:0002532!2.81e-08!604;UBERON:0000483!2.91e-08!309;UBERON:0000119!2.92e-08!312;UBERON:0000064!6.42e-08!219;UBERON:0002420!7.02e-08!9;UBERON:0007245!7.02e-08!9;UBERON:0010009!7.02e-08!9;UBERON:0010011!7.02e-08!9;UBERON:0000454!7.02e-08!9;UBERON:0000477!9.69e-08!286;UBERON:0000475!1.40e-07!365;UBERON:0000200!1.79e-07!6;UBERON:0002308!1.80e-07!9;UBERON:0000125!1.80e-07!9;UBERON:0000468!2.00e-07!659;UBERON:0004733!4.01e-07!12;UBERON:0002028!4.01e-07!12;UBERON:0007277!4.01e-07!12;UBERON:0000062!5.41e-07!511;UBERON:0002680!8.03e-07!9;UBERON:0001895!8.03e-07!9;UBERON:0010092!8.03e-07!9|ontology_enrichment_uberon_v019=UBERON:0002619;2.23e-35;22!UBERON:0001869;3.26e-34;32!UBERON:0000956;8.94e-33;25!UBERON:0000203;8.94e-33;25!UBERON:0001950;1.51e-32;20!UBERON:0003528;1.64e-32;34!UBERON:0002020;1.64e-32;34!UBERON:0002791;5.94e-32;32!UBERON:0001893;7.23e-31;34!UBERON:0002780;2.41e-28;41!UBERON:0001890;2.41e-28;41!UBERON:0000073;8.49e-28;53!UBERON:0002616;8.49e-28;53!UBERON:0000922;1.47e-21;49!UBERON:0000955;1.64e-20;68!UBERON:0001017;9.34e-20;75!UBERON:0001016;1.34e-19;83!UBERON:0001871;4.07e-12;6!UBERON:0000200;2.31e-10;6!UBERON:0004733;2.68e-10;12!UBERON:0002028;2.68e-10;12!UBERON:0002680;1.18e-09;9!UBERON:0001895;1.18e-09;9!UBERON:0004732;2.50e-09;13!UBERON:0001872;6.22e-09;5!UBERON:0002021;7.60e-09;5!UBERON:0000349;1.04e-08;5!UBERON:0002420;1.91e-07;9!UBERON:0007245;1.91e-07;9!UBERON:0010009;1.91e-07;9!UBERON:0010011;1.91e-07;9!UBERON:0000454;1.91e-07;9!UBERON:0011216;2.81e-07;132!UBERON:0000125;6.45e-07;9!UBERON:0002308;6.45e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.17e-58,81;UBERON:0001016,8.61e-55,89;UBERON:0001049,6.75e-51,56;UBERON:0005068,6.75e-51,56;UBERON:0006241,6.75e-51,56;UBERON:0007135,6.75e-51,56;UBERON:0000073,8.81e-50,53;UBERON:0002616,8.81e-50,53;UBERON:0000955,1.07e-47,68;UBERON:0006238,1.07e-47,68;UBERON:0002780,1.86e-40,41;UBERON:0001890,1.86e-40,41;UBERON:0003080,1.86e-40,41;UBERON:0006240,1.86e-40,41;UBERON:0002346,1.92e-40,86;UBERON:0001869,2.63e-38,32;UBERON:0003528,7.87e-38,34;UBERON:0002020,7.87e-38,34;UBERON:0003075,1.00e-37,82;UBERON:0007284,1.00e-37,82;UBERON:0002619,1.58e-35,22;UBERON:0001893,1.67e-35,34;UBERON:0002791,1.82e-35,32;UBERON:0000956,6.18e-33,25;UBERON:0000203,6.18e-33,25;UBERON:0001950,1.11e-32,20;UBERON:0003056,1.93e-31,61;UBERON:0004121,1.82e-30,171;UBERON:0000924,1.82e-30,171;UBERON:0006601,1.82e-30,171;UBERON:0010371,2.26e-30,104;UBERON:0010314,2.49e-26,132;UBERON:0011216,4.99e-24,223;UBERON:0007023,1.68e-20,114;UBERON:0001871,3.40e-12,6;UBERON:0003076,2.04e-11,15;UBERON:0003057,2.04e-11,15;UBERON:0000200,2.21e-10,6;UBERON:0004733,2.48e-10,12;UBERON:0002028,2.48e-10,12;UBERON:0007277,2.48e-10,12;UBERON:0000025,2.67e-10,192;UBERON:0000922,5.05e-10,592;UBERON:0002680,1.12e-09,9;UBERON:0001895,1.12e-09,9;UBERON:0010092,1.12e-09,9;UBERON:0004732,2.33e-09,13;UBERON:0001872,6.36e-09,5;UBERON:0002021,6.46e-09,5;UBERON:0000349,9.79e-09,5;UBERON:0002420,2.06e-07,9;UBERON:00072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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=94030 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25042 | |||
|TSSclassifier=N | |||
|UniProt=Q9NT99,F5GYR9 | |||
|association_with_transcript=-403bp_to_ENST00000389201,ENST00000535879,NM_001080457,uc002pss.2_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_2_at_LRRC4B_5end | |||
|id=chr19:51071705..51071732,- | |||
|ontology_enrichment_celltype=CL:0000047!4.76e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.51e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.97e-08,8;CL:0002322,5.32e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.38e-12;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.14e-43!82;UBERON:0005743!4.77e-43!86;UBERON:0000073!6.16e-42!94;UBERON:0001016!6.16e-42!94;UBERON:0001049!3.72e-39!57;UBERON:0005068!3.72e-39!57;UBERON:0006241!3.72e-39!57;UBERON:0007135!3.72e-39!57;UBERON:0002346!6.53e-37!90;UBERON:0007023!1.28e-34!115;UBERON:0003075!5.33e-34!86;UBERON:0007284!5.33e-34!86;UBERON:0000955!7.42e-34!69;UBERON:0006238!7.42e-34!69;UBERON:0002780!1.49e-32!41;UBERON:0001890!1.49e-32!41;UBERON:0006240!1.49e-32!41;UBERON:0002616!2.16e-32!59;UBERON:0003080!2.10e-31!42;UBERON:0002020!1.07e-29!34;UBERON:0003528!1.07e-29!34;UBERON:0001893!1.39e-29!34;UBERON:0001869!9.16e-29!32;UBERON:0002791!1.24e-28!33;UBERON:0000924!1.89e-26!173;UBERON:0006601!1.89e-26!173;UBERON:0002619!2.62e-24!22;UBERON:0004121!3.63e-24!169;UBERON:0003056!4.68e-24!61;UBERON:0000956!1.05e-23!25;UBERON:0000203!1.05e-23!25;UBERON:0001950!2.08e-22!20;UBERON:0000153!4.16e-21!129;UBERON:0007811!4.16e-21!129;UBERON:0000033!6.38e-21!123;UBERON:0000025!6.52e-12!194;UBERON:0000481!2.42e-11!347;UBERON:0000922!2.58e-11!612;UBERON:0001871!1.03e-09!7;UBERON:0004111!1.26e-09!241;UBERON:0003076!6.80e-09!15;UBERON:0003057!6.80e-09!15;UBERON:0002050!1.10e-08!605;UBERON:0005423!1.10e-08!605;UBERON:0000923!2.81e-08!604;UBERON:0005291!2.81e-08!604;UBERON:0006598!2.81e-08!604;UBERON:0002532!2.81e-08!604;UBERON:0000483!2.91e-08!309;UBERON:0000119!2.92e-08!312;UBERON:0000064!6.42e-08!219;UBERON:0002420!7.02e-08!9;UBERON:0007245!7.02e-08!9;UBERON:0010009!7.02e-08!9;UBERON:0010011!7.02e-08!9;UBERON:0000454!7.02e-08!9;UBERON:0000477!9.69e-08!286;UBERON:0000475!1.40e-07!365;UBERON:0000200!1.79e-07!6;UBERON:0002308!1.80e-07!9;UBERON:0000125!1.80e-07!9;UBERON:0000468!2.00e-07!659;UBERON:0004733!4.01e-07!12;UBERON:0002028!4.01e-07!12;UBERON:0007277!4.01e-07!12;UBERON:0000062!5.41e-07!511;UBERON:0002680!8.03e-07!9;UBERON:0001895!8.03e-07!9;UBERON:0010092!8.03e-07!9 | |||
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| |||
|short_description=p2@LRRC4B | |||
}} |
Revision as of 21:58, 11 September 2013
Short description: | p2@LRRC4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LRRC4B_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -403bp_to_ENST00000389201, ENST00000535879, NM_001080457, uc002pss.2_5end |
EntrezGene: | LRRC4B |
HGNC: | 25042 |
UniProt: | Q9NT99F5GYR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.97e-08 | 8 |
embryonic stem cell | 5.32e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.