FFCP PHASE1:Mm9::chr2:25947453..25947479,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67991|HGNC=|MCL_coexpression_id=283|UniProt=|association_with_transcript=-114bp_to_ENSMUST00000152133_5end|description=CAGE_peak_5_at_Nacc2_5end|id=chr2:25947453..25947479,-|ontology_enrichment_celltype=CL:0000221!1.09e-17!44;CL:0000133!1.09e-17!44;CL:0002319!4.06e-17!43;CL:0000055!7.18e-17!50;CL:0000393!6.52e-13!39;CL:0000211!6.52e-13!39;CL:0000117!1.51e-12!23;CL:0000337!1.51e-12!23;CL:0000540!2.02e-12!33;CL:0000047!2.02e-12!33;CL:0000031!2.02e-12!33;CL:0000404!2.02e-12!33;CL:0002321!1.56e-08!70;CL:0000220!1.56e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,3.98e-24,44;CL:0000133,3.98e-24,44;CL:0002319,5.32e-23,43;CL:0000117,1.01e-20,23;CL:0000337,1.01e-20,23;CL:0000540,5.71e-16,33;CL:0000047,5.71e-16,33;CL:0000031,5.71e-16,33;CL:0000404,5.71e-16,33;CL:0000393,1.16e-12,39;CL:0000211,1.16e-12,39;CL:0002321,2.91e-12,70;CL:0002453,2.34e-10,8;CL:0000333,5.11e-08,10;CL:0000095,5.11e-08,10;CL:0000243,5.11e-08,10;CL:0000123,5.11e-08,10;CL:0000125,5.11e-08,10;CL:0000030,5.11e-08,10;CL:0000339,5.11e-08,10;CL:0000128,3.72e-07,6;CL:0000126,3.72e-07,6;CL:0000127,3.72e-07,6;CL:0002610,9.88e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.28e-33!75;UBERON:0001016!3.28e-33!75;UBERON:0001017!3.06e-32!73;UBERON:0005743!3.06e-32!73;UBERON:0004121!9.48e-24!102;UBERON:0000924!9.48e-24!102;UBERON:0006601!9.48e-24!102;UBERON:0001049!1.44e-23!52;UBERON:0005068!1.44e-23!52;UBERON:0006241!1.44e-23!52;UBERON:0007135!1.44e-23!52;UBERON:0000955!1.04e-22!50;UBERON:0006238!1.04e-22!50;UBERON:0002616!5.40e-22!49;UBERON:0000033!7.12e-22!63;UBERON:0002020!2.69e-19!34;UBERON:0003080!1.05e-16!40;UBERON:0002791!2.91e-16!29;UBERON:0003528!2.91e-16!29;UBERON:0001893!2.91e-16!29;UBERON:0002780!6.03e-16!39;UBERON:0001890!6.03e-16!39;UBERON:0006240!6.03e-16!39;UBERON:0002346!1.89e-15!71;UBERON:0003075!1.89e-15!71;UBERON:0007284!1.89e-15!71;UBERON:0003056!2.68e-14!49;UBERON:0000956!4.02e-13!21;UBERON:0001869!4.02e-13!21;UBERON:0000203!4.02e-13!21;UBERON:0002619!3.78e-11!17;UBERON:0000153!1.20e-10!94;UBERON:0007811!1.11e-09!86;UBERON:0004111!5.17e-09!122;UBERON:0000025!8.00e-08!114;UBERON:0003076!1.51e-07!12;UBERON:0003057!1.51e-07!12;UBERON:0002021!2.28e-07!10;UBERON:0000411!2.28e-07!10;UBERON:0001950!2.28e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.43e-53,73;UBERON:0001016,5.08e-51,75;UBERON:0000073,6.17e-44,54;UBERON:0001049,1.76e-40,52;UBERON:0005068,1.76e-40,52;UBERON:0006241,1.76e-40,52;UBERON:0007135,1.76e-40,52;UBERON:0004121,1.81e-39,95;UBERON:0000924,1.81e-39,95;UBERON:0006601,1.81e-39,95;UBERON:0002020,2.22e-35,34;UBERON:0000955,1.54e-33,47;UBERON:0006238,1.54e-33,47;UBERON:0002616,4.30e-32,46;UBERON:0002346,6.40e-31,64;UBERON:0003075,6.40e-31,64;UBERON:0007284,6.40e-31,64;UBERON:0010371,4.88e-29,73;UBERON:0003528,9.53e-29,29;UBERON:0002791,9.53e-29,29;UBERON:0001893,9.53e-29,29;UBERON:0003080,2.53e-25,40;UBERON:0002780,8.46e-24,39;UBERON:0001890,8.46e-24,39;UBERON:0006240,8.46e-24,39;UBERON:0000956,8.37e-23,21;UBERON:0001869,8.37e-23,21;UBERON:0000203,8.37e-23,21;UBERON:0010314,8.06e-21,92;UBERON:0002619,1.75e-20,17;UBERON:0003056,3.03e-19,49;UBERON:0003076,8.42e-16,12;UBERON:0003057,8.42e-16,12;UBERON:0002021,1.78e-14,10;UBERON:0000411,1.78e-14,10;UBERON:0001950,1.78e-14,10;UBERON:0004111,5.74e-14,122;UBERON:0011216,9.01e-14,194;UBERON:0000025,1.00e-13,114;UBERON:0002240,1.90e-09,6;UBERON:0005174,1.90e-09,6;UBERON:0001137,1.90e-09,6;UBERON:0002950,4.01e-08,4;UBERON:0001891,4.01e-08,4;UBERON:0009616,4.01e-08,4;UBERON:0010286,4.01e-08,4;UBERON:0004733,6.57e-08,6;UBERON:0004732,6.57e-08,6;UBERON:0002028,6.57e-08,6;UBERON:0007277,6.57e-08,6;UBERON:0001948,1.09e-07,5;UBERON:0002315,1.09e-07,5;UBERON:0001954,1.46e-07,7;UBERON:0003022,1.46e-07,7;UBERON:0002421,1.46e-07,7;UBERON:0000349,1.46e-07,7;UBERON:0002600,1.46e-07,7;UBERON:0002420,4.10e-07,8;UBERON:0007245,4.10e-07,8;UBERON:0010009,4.10e-07,8;UBERON:0010011,4.10e-07,8;UBERON:0000454,4.10e-07,8;UBERON:0004684,9.88e-07,3;UBERON:0002275,9.88e-07,3|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,8.28495594245697,9.22681967484782,7.38833616482277,4.75953833526233,10.062679505548,0,0,0,0.771778308107841,0.286533439938757,0.515672092277442,1.82084814773638,1.05798195854407,1.90149421051854,0.338844532069132,0,0.899899717281399,0.988866362566974,0,13.4820049733282,20.3635701820424,1.55534418462716,1.89008313664367,0.630974884054146,6.56997264128748,7.50953039235486,1.46988959057945,0.862609239164127,3.67687514644008,27.5289702498472,17.4931653176707,16.4358990584181,1.58263545276233,0.640413505216868,0,16.7509799400829,14.069065250792,9.93188610549266,5.59794312399969,4.6982654663704,1.4911955666024,0.908714319998209,0.604572480854284,0,0,0,0,0,0,0.842666520790511,0.340860645156116,0.259786004602869,0,3.66192891419369,0,0,0,0.216491041011214,0.253359865475099,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0.884610551949874,0.323533699894818,0.441683036920787,0,0,12.8823550685081,9.84399522023239,0.255457055208591,0,0,0,16.926342252745,9.15001205637253,1.00523481690292,8.69121600961382,5.62574006126727,16.6230435647648,7.94982189032012,0,0.124406970610093,0,0.631325567659422,0,0,0.360124259610698,0,0.136072998302656,0,0.374806898238915,0.258703370739016,0.215567992932842,0.378212160335639,0.351902248327898,0.219195732427575,0.278047249225598,0.696504333044333,0.61734640922383,0,0,0,0,0.207125772535502,0,0,0.23674473558521,0.196764231747404,0,0,0,0,0,0,0.0810688095458557,0,0,0,7.14985825118033,1.64647379806855,0,0,0,0,0,0,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0,0,0,0,0,0,0.114248512609729,0,0.407302655690628,0,0.140271639780637,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0.405720242777006,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.369506380333209,0.568474235311454,0.488894929326078,0.339490171550376,0,0.167506257441816,0,0,0.157635144106191,0.221464689648775,0,0.327726629431476,0.172684981865896,0,0,0,0,0,20.871576698413,17.3473296156461,0.327869890753351,0,0,0,0.646270193198397,0.716906393857656,0,0.849229592366497,1.21443210502468,0.292255857911312,0.790575555893047,8.03303291054518,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0,0.316036757935816,0,0,0.680879211507576,0.18006109403131,0,0,0.532020700926821,0.535106452806212,0,0.608929898229199,0,0,0,0,0.161464426695906,0.120625849856312,0.119372344003136,0,0.291480836629851,29.11177241565,0.341741761595705,0.206386867963223,0,0,0,0.228778173206523,0.169978429993855,0.139951452323658,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0.621339313086926,0,0,0,0,0,0,0,0.2604087696879,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0.579568782096571,0,0,0,0.501572104035363,7.34177395402186,5.52390283808612,2.86447756719698,6.53042092906013,4.11049511862385,8.3093328712867,8.10027000278167,6.75481804836331,6.79713613476307,4.65984280576638,0.726511433089237,0.798049746802062,0.341467211508268,0.729320151204882,0,0.367687016900028,0.44449345560323,0.412070114477788,0,0,0.25347929989024,0,0.280924522409647,0.512201219238954,0.402048282689293,0,0.579421629724277,0.38581844092741,0,0,0.342869252385415,0.177475806159338,0.476872379894642,0.581385666529314,0.188218760830661,0.169229215783353,0.365855945745545,0.263069711437843,0,0.561142271657738,0.237270036248348,0.394017929502254,0,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.429742108096597,0.382576664137687,1.10295709559758,0.231867835620421|short_description=p5@Nacc2}} | ||
|EntrezGene=67991 | |||
|HGNC= | |||
|MCL_coexpression_id=283 | |||
|UniProt= | |||
|association_with_transcript=-114bp_to_ENSMUST00000152133_5end | |||
|description=CAGE_peak_5_at_Nacc2_5end | |||
|id=chr2:25947453..25947479,- | |||
|ontology_enrichment_celltype=CL:0000221!1.09e-17!44;CL:0000133!1.09e-17!44;CL:0002319!4.06e-17!43;CL:0000055!7.18e-17!50;CL:0000393!6.52e-13!39;CL:0000211!6.52e-13!39;CL:0000117!1.51e-12!23;CL:0000337!1.51e-12!23;CL:0000540!2.02e-12!33;CL:0000047!2.02e-12!33;CL:0000031!2.02e-12!33;CL:0000404!2.02e-12!33;CL:0002321!1.56e-08!70;CL:0000220!1.56e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.98e-24,44;CL:0000133,3.98e-24,44;CL:0002319,5.32e-23,43;CL:0000117,1.01e-20,23;CL:0000337,1.01e-20,23;CL:0000540,5.71e-16,33;CL:0000047,5.71e-16,33;CL:0000031,5.71e-16,33;CL:0000404,5.71e-16,33;CL:0000393,1.16e-12,39;CL:0000211,1.16e-12,39;CL:0002321,2.91e-12,70;CL:0002453,2.34e-10,8;CL:0000333,5.11e-08,10;CL:0000095,5.11e-08,10;CL:0000243,5.11e-08,10;CL:0000123,5.11e-08,10;CL:0000125,5.11e-08,10;CL:0000030,5.11e-08,10;CL:0000339,5.11e-08,10;CL:0000128,3.72e-07,6;CL:0000126,3.72e-07,6;CL:0000127,3.72e-07,6;CL:0002610,9.88e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.28e-33!75;UBERON:0001016!3.28e-33!75;UBERON:0001017!3.06e-32!73;UBERON:0005743!3.06e-32!73;UBERON:0004121!9.48e-24!102;UBERON:0000924!9.48e-24!102;UBERON:0006601!9.48e-24!102;UBERON:0001049!1.44e-23!52;UBERON:0005068!1.44e-23!52;UBERON:0006241!1.44e-23!52;UBERON:0007135!1.44e-23!52;UBERON:0000955!1.04e-22!50;UBERON:0006238!1.04e-22!50;UBERON:0002616!5.40e-22!49;UBERON:0000033!7.12e-22!63;UBERON:0002020!2.69e-19!34;UBERON:0003080!1.05e-16!40;UBERON:0002791!2.91e-16!29;UBERON:0003528!2.91e-16!29;UBERON:0001893!2.91e-16!29;UBERON:0002780!6.03e-16!39;UBERON:0001890!6.03e-16!39;UBERON:0006240!6.03e-16!39;UBERON:0002346!1.89e-15!71;UBERON:0003075!1.89e-15!71;UBERON:0007284!1.89e-15!71;UBERON:0003056!2.68e-14!49;UBERON:0000956!4.02e-13!21;UBERON:0001869!4.02e-13!21;UBERON:0000203!4.02e-13!21;UBERON:0002619!3.78e-11!17;UBERON:0000153!1.20e-10!94;UBERON:0007811!1.11e-09!86;UBERON:0004111!5.17e-09!122;UBERON:0000025!8.00e-08!114;UBERON:0003076!1.51e-07!12;UBERON:0003057!1.51e-07!12;UBERON:0002021!2.28e-07!10;UBERON:0000411!2.28e-07!10;UBERON:0001950!2.28e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.43e-53,73;UBERON:0001016,5.08e-51,75;UBERON:0000073,6.17e-44,54;UBERON:0001049,1.76e-40,52;UBERON:0005068,1.76e-40,52;UBERON:0006241,1.76e-40,52;UBERON:0007135,1.76e-40,52;UBERON:0004121,1.81e-39,95;UBERON:0000924,1.81e-39,95;UBERON:0006601,1.81e-39,95;UBERON:0002020,2.22e-35,34;UBERON:0000955,1.54e-33,47;UBERON:0006238,1.54e-33,47;UBERON:0002616,4.30e-32,46;UBERON:0002346,6.40e-31,64;UBERON:0003075,6.40e-31,64;UBERON:0007284,6.40e-31,64;UBERON:0010371,4.88e-29,73;UBERON:0003528,9.53e-29,29;UBERON:0002791,9.53e-29,29;UBERON:0001893,9.53e-29,29;UBERON:0003080,2.53e-25,40;UBERON:0002780,8.46e-24,39;UBERON:0001890,8.46e-24,39;UBERON:0006240,8.46e-24,39;UBERON:0000956,8.37e-23,21;UBERON:0001869,8.37e-23,21;UBERON:0000203,8.37e-23,21;UBERON:0010314,8.06e-21,92;UBERON:0002619,1.75e-20,17;UBERON:0003056,3.03e-19,49;UBERON:0003076,8.42e-16,12;UBERON:0003057,8.42e-16,12;UBERON:0002021,1.78e-14,10;UBERON:0000411,1.78e-14,10;UBERON:0001950,1.78e-14,10;UBERON:0004111,5.74e-14,122;UBERON:0011216,9.01e-14,194;UBERON:0000025,1.00e-13,114;UBERON:0002240,1.90e-09,6;UBERON:0005174,1.90e-09,6;UBERON:0001137,1.90e-09,6;UBERON:0002950,4.01e-08,4;UBERON:0001891,4.01e-08,4;UBERON:0009616,4.01e-08,4;UBERON:0010286,4.01e-08,4;UBERON:0004733,6.57e-08,6;UBERON:0004732,6.57e-08,6;UBERON:0002028,6.57e-08,6;UBERON:0007277,6.57e-08,6;UBERON:0001948,1.09e-07,5;UBERON:0002315,1.09e-07,5;UBERON:0001954,1.46e-07,7;UBERON:0003022,1.46e-07,7;UBERON:0002421,1.46e-07,7;UBERON:0000349,1.46e-07,7;UBERON:0002600,1.46e-07,7;UBERON:0002420,4.10e-07,8;UBERON:0007245,4.10e-07,8;UBERON:0010009,4.10e-07,8;UBERON:0010011,4.10e-07,8;UBERON:0000454,4.10e-07,8;UBERON:0004684,9.88e-07,3;UBERON:0002275,9.88e-07,3 | |||
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|short_description=p5@Nacc2 | |||
}} |
Revision as of 23:30, 13 September 2013
Short description: | p5@Nacc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Nacc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:283 |
Association with transcript: | -114bp_to_ENSMUST00000152133_5end |
EntrezGene: | Nacc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.98e-24 | 44 |
neurectodermal cell | 3.98e-24 | 44 |
neural cell | 5.32e-23 | 43 |
CNS neuron (sensu Vertebrata) | 1.01e-20 | 23 |
neuroblast (sensu Vertebrata) | 1.01e-20 | 23 |
neuron | 5.71e-16 | 33 |
neuronal stem cell | 5.71e-16 | 33 |
neuroblast | 5.71e-16 | 33 |
electrically signaling cell | 5.71e-16 | 33 |
electrically responsive cell | 1.16e-12 | 39 |
electrically active cell | 1.16e-12 | 39 |
embryonic cell | 2.91e-12 | 70 |
oligodendrocyte precursor cell | 2.34e-10 | 8 |
migratory neural crest cell | 5.11e-08 | 10 |
neuron associated cell | 5.11e-08 | 10 |
glial cell (sensu Vertebrata) | 5.11e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 5.11e-08 | 10 |
glial cell | 5.11e-08 | 10 |
glioblast | 5.11e-08 | 10 |
glioblast (sensu Vertebrata) | 5.11e-08 | 10 |
oligodendrocyte | 3.72e-07 | 6 |
macroglial cell | 3.72e-07 | 6 |
astrocyte | 3.72e-07 | 6 |
raphe nuclei neuron | 9.88e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.