FFCP PHASE1:Mm9::chr3:106904514..106904567,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=16490|HGNC=|MCL_coexpression_id=1|UniProt=P63141,B2RS05,Q3TZ64|association_with_transcript=29bp_to_ENSMUST00000038695,NM_008417,uc008qws.1_5end|description=CAGE_peak_1_at_Kcna2_5end|id=chr3:106904514..106904567,+|ontology_enrichment_celltype=CL:0000117!3.32e-14!23;CL:0000337!3.32e-14!23;CL:0000540!1.36e-12!33;CL:0000047!1.36e-12!33;CL:0000031!1.36e-12!33;CL:0000404!1.36e-12!33;CL:0000221!1.18e-09!44;CL:0000133!1.18e-09!44;CL:0002319!3.25e-09!43;CL:0000393!6.79e-09!39;CL:0000211!6.79e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,7.46e-19,23;CL:0000337,7.46e-19,23;CL:0000540,1.11e-11,33;CL:0000047,1.11e-11,33;CL:0000031,1.11e-11,33;CL:0000404,1.11e-11,33;CL:0000393,3.52e-09,39;CL:0000211,3.52e-09,39;CL:0000221,1.40e-08,44;CL:0000133,1.40e-08,44;CL:0002319,6.48e-08,43;CL:0002610,7.37e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.39e-26!75;UBERON:0001016!1.39e-26!75;UBERON:0001017!8.53e-26!73;UBERON:0005743!8.53e-26!73;UBERON:0000033!1.46e-24!63;UBERON:0001049!2.69e-23!52;UBERON:0005068!2.69e-23!52;UBERON:0006241!2.69e-23!52;UBERON:0007135!2.69e-23!52;UBERON:0002346!2.12e-22!71;UBERON:0003075!2.12e-22!71;UBERON:0007284!2.12e-22!71;UBERON:0004121!2.25e-22!102;UBERON:0000924!2.25e-22!102;UBERON:0006601!2.25e-22!102;UBERON:0000955!2.67e-22!50;UBERON:0006238!2.67e-22!50;UBERON:0002616!1.39e-21!49;UBERON:0003056!2.63e-20!49;UBERON:0002020!8.95e-19!34;UBERON:0003080!1.58e-17!40;UBERON:0002780!1.05e-16!39;UBERON:0001890!1.05e-16!39;UBERON:0006240!1.05e-16!39;UBERON:0002791!1.84e-15!29;UBERON:0003528!1.84e-15!29;UBERON:0001893!1.84e-15!29;UBERON:0007811!2.94e-15!86;UBERON:0000153!1.44e-12!94;UBERON:0000956!2.24e-10!21;UBERON:0001869!2.24e-10!21;UBERON:0000203!2.24e-10!21;UBERON:0002619!6.17e-09!17;UBERON:0002021!7.13e-09!10;UBERON:0000411!7.13e-09!10;UBERON:0001950!7.13e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.93e-38,54;UBERON:0001049,4.77e-35,52;UBERON:0005068,4.77e-35,52;UBERON:0006241,4.77e-35,52;UBERON:0007135,4.77e-35,52;UBERON:0001017,1.02e-34,73;UBERON:0002346,1.58e-33,64;UBERON:0003075,1.58e-33,64;UBERON:0007284,1.58e-33,64;UBERON:0001016,1.73e-33,75;UBERON:0004121,3.88e-31,95;UBERON:0000924,3.88e-31,95;UBERON:0006601,3.88e-31,95;UBERON:0002020,1.15e-29,34;UBERON:0010371,1.29e-29,73;UBERON:0000955,3.28e-28,47;UBERON:0006238,3.28e-28,47;UBERON:0002616,6.72e-27,46;UBERON:0003056,2.11e-23,49;UBERON:0003528,4.29e-23,29;UBERON:0002791,4.29e-23,29;UBERON:0001893,4.29e-23,29;UBERON:0003080,1.20e-22,40;UBERON:0010314,2.89e-21,92;UBERON:0002780,3.64e-21,39;UBERON:0001890,3.64e-21,39;UBERON:0006240,3.64e-21,39;UBERON:0002021,9.77e-17,10;UBERON:0000411,9.77e-17,10;UBERON:0001950,9.77e-17,10;UBERON:0002619,1.21e-14,17;UBERON:0000956,2.83e-13,21;UBERON:0001869,2.83e-13,21;UBERON:0000203,2.83e-13,21;UBERON:0003076,5.52e-13,12;UBERON:0003057,5.52e-13,12;UBERON:0002420,9.90e-12,8;UBERON:0007245,9.90e-12,8;UBERON:0010009,9.90e-12,8;UBERON:0010011,9.90e-12,8;UBERON:0000454,9.90e-12,8;UBERON:0000025,1.10e-10,114;UBERON:0004111,4.28e-10,122;UBERON:0002240,1.10e-09,6;UBERON:0005174,1.10e-09,6;UBERON:0001137,1.10e-09,6;UBERON:0001948,6.18e-08,5;UBERON:0002315,6.18e-08,5;UBERON:0002950,9.98e-08,4;UBERON:0001891,9.98e-08,4;UBERON:0009616,9.98e-08,4;UBERON:0010286,9.98e-08,4;UBERON:0000369,2.48e-07,5;UBERON:0002435,2.48e-07,5;UBERON:0000204,2.48e-07,5;UBERON:0010082,2.48e-07,5;UBERON:0004684,7.37e-07,3;UBERON:0002275,7.37e-07,3|phase1_expression=0.480446541314382,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0.137114433605739,0,9.43980520676875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,1.68046899571232,0,0,0,3.23706337375356,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0.311068836925433,0.540023753326763,0.630974884054146,15.996455126613,15.9025349485162,0.489963196859816,0.670918297127655,1.83843757322004,127.734421959291,109.683423415176,92.9319526200273,2.1101806036831,2.65314166446988,1.56274011167028,76.216958727377,38.8306200921859,42.3251146341764,15.9099436155781,11.10499110233,3.72798891650601,0.530083353332288,0.604572480854284,0.289864488701678,0,0,0,0,0,2.80888840263504,0,0,0,1.40843419776681,0,0,0,0,0,0,1.82694207550496,0,0.148442139064825,0,0,0,0.150722640552623,0,0,0,0.433798070759735,0,0,0,0,0,47.4304891158706,54.2466970646849,0.255457055208591,0,0,0,95.1170560220624,59.4750783664214,1.88481528169297,62.5767552692195,52.6773842100481,70.2323590611313,52.0794454447502,0.203678727700633,0,0,2.73574412652416,0.260240885925407,0,0.360124259610698,0.90422890701429,1.08858398642125,0.896796041993948,1.49922759295566,9.05461797586555,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,34.4875515645169,2.57261530948211,0,0,0,0,0,0.403367049246685,0,0,0,0,0,0,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0,0,0.195133647857799,0,0,0.159454768657487,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,97.7753093025653,87.9087649441524,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,35.9879874392424,0.425820255624806,0,0.325773918707152,0.659880491890142,0,0,0,0,0,0,0,0,0,0,0,0,3.40439605753788,0,0,0.214337035031592,0.177340233642274,0.713475270408282,0.329098041204242,0.608929898229199,0,0,0,0,0,0,0,0,0.291480836629851,111.996882414348,0.170870880797853,0,0,0,0,0,0,0.139951452323658,0,0,0,0.203319467126849,0,0,0.218362563746178,0.269728692769641,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.129159823477731,0,0,0,0.209718688851422,0,0,0.316011120628178,0,0,0,0,0,0,0,0.100966449948148,0.15241361331,0,0.38983152295901,0,0.233753804363138,0,0,0,0,0,0,0.549454872801795,0,0,44.0506437241312,36.365693684067,45.8316410751517,38.8388192096734,68.5082519770642,80.827147020698,56.7018900194717,62.5946472481666,56.6428011230256,65.2377992807293,0.103787347584177,0.399024873401031,0.682934423016537,0,0.419226325255965,0.183843508450014,0.666740183404846,0.618105171716683,2.24643446714271,0.252697211763798,0.25347929989024,0.377252682772152,0.842773567228942,0.704276676453562,0.574354689556133,0.952587382566147,0.579421629724277,0.192909220463705,0,0.735994600671987,0.685738504770831,0.70990322463735,0.953744759789284,0.436039249896986,0.752875043322645,0.761531471025089,0.548783918618318,0.526139422875686,0.407412341537585,1.68342681497322,0.949080144993393,0.29551344712669,0,0.309873682371932,0.192906610981141,1.24905288968973,0.701794825336225,0.644613162144895,0.57386499620653,1.32354851471709,0.927471342481686|short_description=p1@Kcna2}} | ||
|EntrezGene=16490 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P63141,B2RS05,Q3TZ64 | |||
|association_with_transcript=29bp_to_ENSMUST00000038695,NM_008417,uc008qws.1_5end | |||
|description=CAGE_peak_1_at_Kcna2_5end | |||
|id=chr3:106904514..106904567,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.32e-14!23;CL:0000337!3.32e-14!23;CL:0000540!1.36e-12!33;CL:0000047!1.36e-12!33;CL:0000031!1.36e-12!33;CL:0000404!1.36e-12!33;CL:0000221!1.18e-09!44;CL:0000133!1.18e-09!44;CL:0002319!3.25e-09!43;CL:0000393!6.79e-09!39;CL:0000211!6.79e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.46e-19,23;CL:0000337,7.46e-19,23;CL:0000540,1.11e-11,33;CL:0000047,1.11e-11,33;CL:0000031,1.11e-11,33;CL:0000404,1.11e-11,33;CL:0000393,3.52e-09,39;CL:0000211,3.52e-09,39;CL:0000221,1.40e-08,44;CL:0000133,1.40e-08,44;CL:0002319,6.48e-08,43;CL:0002610,7.37e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.39e-26!75;UBERON:0001016!1.39e-26!75;UBERON:0001017!8.53e-26!73;UBERON:0005743!8.53e-26!73;UBERON:0000033!1.46e-24!63;UBERON:0001049!2.69e-23!52;UBERON:0005068!2.69e-23!52;UBERON:0006241!2.69e-23!52;UBERON:0007135!2.69e-23!52;UBERON:0002346!2.12e-22!71;UBERON:0003075!2.12e-22!71;UBERON:0007284!2.12e-22!71;UBERON:0004121!2.25e-22!102;UBERON:0000924!2.25e-22!102;UBERON:0006601!2.25e-22!102;UBERON:0000955!2.67e-22!50;UBERON:0006238!2.67e-22!50;UBERON:0002616!1.39e-21!49;UBERON:0003056!2.63e-20!49;UBERON:0002020!8.95e-19!34;UBERON:0003080!1.58e-17!40;UBERON:0002780!1.05e-16!39;UBERON:0001890!1.05e-16!39;UBERON:0006240!1.05e-16!39;UBERON:0002791!1.84e-15!29;UBERON:0003528!1.84e-15!29;UBERON:0001893!1.84e-15!29;UBERON:0007811!2.94e-15!86;UBERON:0000153!1.44e-12!94;UBERON:0000956!2.24e-10!21;UBERON:0001869!2.24e-10!21;UBERON:0000203!2.24e-10!21;UBERON:0002619!6.17e-09!17;UBERON:0002021!7.13e-09!10;UBERON:0000411!7.13e-09!10;UBERON:0001950!7.13e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.93e-38,54;UBERON:0001049,4.77e-35,52;UBERON:0005068,4.77e-35,52;UBERON:0006241,4.77e-35,52;UBERON:0007135,4.77e-35,52;UBERON:0001017,1.02e-34,73;UBERON:0002346,1.58e-33,64;UBERON:0003075,1.58e-33,64;UBERON:0007284,1.58e-33,64;UBERON:0001016,1.73e-33,75;UBERON:0004121,3.88e-31,95;UBERON:0000924,3.88e-31,95;UBERON:0006601,3.88e-31,95;UBERON:0002020,1.15e-29,34;UBERON:0010371,1.29e-29,73;UBERON:0000955,3.28e-28,47;UBERON:0006238,3.28e-28,47;UBERON:0002616,6.72e-27,46;UBERON:0003056,2.11e-23,49;UBERON:0003528,4.29e-23,29;UBERON:0002791,4.29e-23,29;UBERON:0001893,4.29e-23,29;UBERON:0003080,1.20e-22,40;UBERON:0010314,2.89e-21,92;UBERON:0002780,3.64e-21,39;UBERON:0001890,3.64e-21,39;UBERON:0006240,3.64e-21,39;UBERON:0002021,9.77e-17,10;UBERON:0000411,9.77e-17,10;UBERON:0001950,9.77e-17,10;UBERON:0002619,1.21e-14,17;UBERON:0000956,2.83e-13,21;UBERON:0001869,2.83e-13,21;UBERON:0000203,2.83e-13,21;UBERON:0003076,5.52e-13,12;UBERON:0003057,5.52e-13,12;UBERON:0002420,9.90e-12,8;UBERON:0007245,9.90e-12,8;UBERON:0010009,9.90e-12,8;UBERON:0010011,9.90e-12,8;UBERON:0000454,9.90e-12,8;UBERON:0000025,1.10e-10,114;UBERON:0004111,4.28e-10,122;UBERON:0002240,1.10e-09,6;UBERON:0005174,1.10e-09,6;UBERON:0001137,1.10e-09,6;UBERON:0001948,6.18e-08,5;UBERON:0002315,6.18e-08,5;UBERON:0002950,9.98e-08,4;UBERON:0001891,9.98e-08,4;UBERON:0009616,9.98e-08,4;UBERON:0010286,9.98e-08,4;UBERON:0000369,2.48e-07,5;UBERON:0002435,2.48e-07,5;UBERON:0000204,2.48e-07,5;UBERON:0010082,2.48e-07,5;UBERON:0004684,7.37e-07,3;UBERON:0002275,7.37e-07,3 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0.137114433605739,0,9.43980520676875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,1.68046899571232,0,0,0,3.23706337375356,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0.384218305321555,0.311068836925433,0.540023753326763,0.630974884054146,15.996455126613,15.9025349485162,0.489963196859816,0.670918297127655,1.83843757322004,127.734421959291,109.683423415176,92.9319526200273,2.1101806036831,2.65314166446988,1.56274011167028,76.216958727377,38.8306200921859,42.3251146341764,15.9099436155781,11.10499110233,3.72798891650601,0.530083353332288,0.604572480854284,0.289864488701678,0,0,0,0,0,2.80888840263504,0,0,0,1.40843419776681,0,0,0,0,0,0,1.82694207550496,0,0.148442139064825,0,0,0,0.150722640552623,0,0,0,0.433798070759735,0,0,0,0,0,47.4304891158706,54.2466970646849,0.255457055208591,0,0,0,95.1170560220624,59.4750783664214,1.88481528169297,62.5767552692195,52.6773842100481,70.2323590611313,52.0794454447502,0.203678727700633,0,0,2.73574412652416,0.260240885925407,0,0.360124259610698,0.90422890701429,1.08858398642125,0.896796041993948,1.49922759295566,9.05461797586555,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,34.4875515645169,2.57261530948211,0,0,0,0,0,0.403367049246685,0,0,0,0,0,0,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0,0,0.195133647857799,0,0,0.159454768657487,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,97.7753093025653,87.9087649441524,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,35.9879874392424,0.425820255624806,0,0.325773918707152,0.659880491890142,0,0,0,0,0,0,0,0,0,0,0,0,3.40439605753788,0,0,0.214337035031592,0.177340233642274,0.713475270408282,0.329098041204242,0.608929898229199,0,0,0,0,0,0,0,0,0.291480836629851,111.996882414348,0.170870880797853,0,0,0,0,0,0,0.139951452323658,0,0,0,0.203319467126849,0,0,0.218362563746178,0.269728692769641,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.129159823477731,0,0,0,0.209718688851422,0,0,0.316011120628178,0,0,0,0,0,0,0,0.100966449948148,0.15241361331,0,0.38983152295901,0,0.233753804363138,0,0,0,0,0,0,0.549454872801795,0,0,44.0506437241312,36.365693684067,45.8316410751517,38.8388192096734,68.5082519770642,80.827147020698,56.7018900194717,62.5946472481666,56.6428011230256,65.2377992807293,0.103787347584177,0.399024873401031,0.682934423016537,0,0.419226325255965,0.183843508450014,0.666740183404846,0.618105171716683,2.24643446714271,0.252697211763798,0.25347929989024,0.377252682772152,0.842773567228942,0.704276676453562,0.574354689556133,0.952587382566147,0.579421629724277,0.192909220463705,0,0.735994600671987,0.685738504770831,0.70990322463735,0.953744759789284,0.436039249896986,0.752875043322645,0.761531471025089,0.548783918618318,0.526139422875686,0.407412341537585,1.68342681497322,0.949080144993393,0.29551344712669,0,0.309873682371932,0.192906610981141,1.24905288968973,0.701794825336225,0.644613162144895,0.57386499620653,1.32354851471709,0.927471342481686 | |||
|short_description=p1@Kcna2 | |||
}} |
Revision as of 01:10, 14 September 2013
Short description: | p1@Kcna2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcna2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 29bp_to_ENSMUST00000038695, NM_008417, uc008qws.1_5end |
EntrezGene: | Kcna2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.46e-19 | 23 |
neuroblast (sensu Vertebrata) | 7.46e-19 | 23 |
neuron | 1.11e-11 | 33 |
neuronal stem cell | 1.11e-11 | 33 |
neuroblast | 1.11e-11 | 33 |
electrically signaling cell | 1.11e-11 | 33 |
electrically responsive cell | 3.52e-09 | 39 |
electrically active cell | 3.52e-09 | 39 |
ectodermal cell | 1.40e-08 | 44 |
neurectodermal cell | 1.40e-08 | 44 |
neural cell | 6.48e-08 | 43 |
raphe nuclei neuron | 7.37e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.