FFCP PHASE1:Mm9::chr3:94203194..94203255,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=320747|HGNC=|MCL_coexpression_id=218|UniProt=Q149C3|association_with_transcript=53bp_to_NM_177250,uc008qgb.1_5end|description=CAGE_peak_2_at_Lingo4_5end|id=chr3:94203194..94203255,+|ontology_enrichment_celltype=CL:0000117!7.94e-09!23;CL:0000337!7.94e-09!23;CL:0000540!3.45e-07!33;CL:0000047!3.45e-07!33;CL:0000031!3.45e-07!33;CL:0000404!3.45e-07!33;CL:0000221!5.24e-07!44;CL:0000133!5.24e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.81e-10,23;CL:0000337,2.81e-10,23;CL:0000540,4.16e-09,33;CL:0000047,4.16e-09,33;CL:0000031,4.16e-09,33;CL:0000404,4.16e-09,33;CL:0002610,2.81e-08,3;CL:0002612,1.52e-07,3;CL:0002614,2.52e-07,3;CL:0000393,2.88e-07,39;CL:0000211,2.88e-07,39;CL:0000221,3.21e-07,44;CL:0000133,3.21e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.39e-20!86;UBERON:0000153!4.57e-18!94;UBERON:0004121!1.55e-17!102;UBERON:0000924!1.55e-17!102;UBERON:0006601!1.55e-17!102;UBERON:0001017!5.49e-17!73;UBERON:0005743!5.49e-17!73;UBERON:0000033!4.35e-16!63;UBERON:0002346!5.94e-16!71;UBERON:0003075!5.94e-16!71;UBERON:0007284!5.94e-16!71;UBERON:0000073!6.01e-16!75;UBERON:0001016!6.01e-16!75;UBERON:0001049!4.25e-15!52;UBERON:0005068!4.25e-15!52;UBERON:0006241!4.25e-15!52;UBERON:0007135!4.25e-15!52;UBERON:0000955!1.40e-13!50;UBERON:0006238!1.40e-13!50;UBERON:0002616!4.11e-13!49;UBERON:0003056!1.12e-10!49;UBERON:0002020!2.78e-10!34;UBERON:0003076!1.24e-08!12;UBERON:0003057!1.24e-08!12;UBERON:0003080!1.70e-08!40;UBERON:0000475!2.44e-08!200;UBERON:0002780!7.07e-08!39;UBERON:0001890!7.07e-08!39;UBERON:0006240!7.07e-08!39;UBERON:0000064!1.72e-07!99;UBERON:0002791!3.75e-07!29;UBERON:0003528!3.75e-07!29;UBERON:0001893!3.75e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.47e-19,12;UBERON:0003057,5.47e-19,12;UBERON:0002240,4.34e-14,6;UBERON:0005174,4.34e-14,6;UBERON:0001137,4.34e-14,6;UBERON:0000073,6.57e-13,54;UBERON:0002370,7.05e-13,23;UBERON:0000974,7.05e-13,23;UBERON:0004807,7.05e-13,23;UBERON:0005058,7.05e-13,23;UBERON:0003351,7.05e-13,23;UBERON:0009113,7.05e-13,23;UBERON:0003295,7.05e-13,23;UBERON:0009722,7.05e-13,23;UBERON:0005562,7.05e-13,23;UBERON:0007690,7.05e-13,23;UBERON:0006562,3.18e-12,24;UBERON:0003408,3.18e-12,24;UBERON:0001557,3.18e-12,24;UBERON:0001042,3.18e-12,24;UBERON:0008814,3.18e-12,24;UBERON:0009145,3.18e-12,24;UBERON:0001017,9.58e-12,73;UBERON:0001948,1.01e-11,5;UBERON:0002315,1.01e-11,5;UBERON:0001016,2.78e-11,75;UBERON:0004177,3.37e-11,29;UBERON:0005057,3.37e-11,29;UBERON:0000072,1.48e-10,27;UBERON:0001049,1.57e-10,52;UBERON:0005068,1.57e-10,52;UBERON:0006241,1.57e-10,52;UBERON:0007135,1.57e-10,52;UBERON:0007811,5.53e-10,36;UBERON:0002950,1.41e-09,4;UBERON:0001891,1.41e-09,4;UBERON:0009616,1.41e-09,4;UBERON:0010286,1.41e-09,4;UBERON:0011216,3.25e-09,194;UBERON:0000077,9.17e-09,35;UBERON:0004121,1.14e-08,95;UBERON:0000924,1.14e-08,95;UBERON:0006601,1.14e-08,95;UBERON:0004684,2.81e-08,3;UBERON:0002275,2.81e-08,3;UBERON:0010371,3.89e-08,73;UBERON:0000153,7.85e-08,43;UBERON:0002346,9.27e-08,64;UBERON:0003075,9.27e-08,64;UBERON:0007284,9.27e-08,64;UBERON:0002257,1.52e-07,3;UBERON:0002038,2.52e-07,3;UBERON:0009663,2.52e-07,3;UBERON:0009661,2.52e-07,3;UBERON:0000125,2.52e-07,3;UBERON:0002308,2.52e-07,3;UBERON:0004733,4.34e-07,6;UBERON:0004732,4.34e-07,6;UBERON:0002028,4.34e-07,6;UBERON:0007277,4.34e-07,6;UBERON:0000483,5.92e-07,174;UBERON:0000119,8.61e-07,176|phase1_expression=1.60148847104794,0,0,0,0,0,0,0.516493293766305,0.140788722151667,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.595303031057488,3.47518329203099,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.65407546914134,0,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0.898800331555214,0.384218305321555,0.207379224616955,0,0.420649922702764,4.28476476605705,3.97563373712904,0.367472397644862,0.287536413054709,0,8.8092704799511,4.46905683298157,6.91229399653096,0.527545150920775,0.182975287204819,0.52091337055676,8.37548997004143,1.12552522006336,2.75036845998258,5.30331453852602,2.98980529678116,1.86399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0.35333957451034,2.39433813620357,0,2.54805239706646,0,0,0,0,0,1.29468941823586,0.742210695324124,0.346970653532272,0,0,0.150722640552623,0.117588707135705,0.376999773989026,0,0,0,0,0,0,0,6.73395833126558,6.28340120440365,0,0,0,0,7.33974133083631,0.915001205637253,0.251308704225729,0.347648640384553,0.511430914660661,4.77912502486988,2.43361894601636,0.101839363850316,0,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.180062129805349,0,0.95251098811859,0.640568601424249,0.281105173679186,0.776110112217047,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.617427674275707,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0.397912944082302,0.779856348476481,0,0,0,0,0.11424851260972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| ||
|EntrezGene=320747 | |||
|HGNC= | |||
|MCL_coexpression_id=218 | |||
|UniProt=Q149C3 | |||
|association_with_transcript=53bp_to_NM_177250,uc008qgb.1_5end | |||
|description=CAGE_peak_2_at_Lingo4_5end | |||
|id=chr3:94203194..94203255,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.94e-09!23;CL:0000337!7.94e-09!23;CL:0000540!3.45e-07!33;CL:0000047!3.45e-07!33;CL:0000031!3.45e-07!33;CL:0000404!3.45e-07!33;CL:0000221!5.24e-07!44;CL:0000133!5.24e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.81e-10,23;CL:0000337,2.81e-10,23;CL:0000540,4.16e-09,33;CL:0000047,4.16e-09,33;CL:0000031,4.16e-09,33;CL:0000404,4.16e-09,33;CL:0002610,2.81e-08,3;CL:0002612,1.52e-07,3;CL:0002614,2.52e-07,3;CL:0000393,2.88e-07,39;CL:0000211,2.88e-07,39;CL:0000221,3.21e-07,44;CL:0000133,3.21e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.39e-20!86;UBERON:0000153!4.57e-18!94;UBERON:0004121!1.55e-17!102;UBERON:0000924!1.55e-17!102;UBERON:0006601!1.55e-17!102;UBERON:0001017!5.49e-17!73;UBERON:0005743!5.49e-17!73;UBERON:0000033!4.35e-16!63;UBERON:0002346!5.94e-16!71;UBERON:0003075!5.94e-16!71;UBERON:0007284!5.94e-16!71;UBERON:0000073!6.01e-16!75;UBERON:0001016!6.01e-16!75;UBERON:0001049!4.25e-15!52;UBERON:0005068!4.25e-15!52;UBERON:0006241!4.25e-15!52;UBERON:0007135!4.25e-15!52;UBERON:0000955!1.40e-13!50;UBERON:0006238!1.40e-13!50;UBERON:0002616!4.11e-13!49;UBERON:0003056!1.12e-10!49;UBERON:0002020!2.78e-10!34;UBERON:0003076!1.24e-08!12;UBERON:0003057!1.24e-08!12;UBERON:0003080!1.70e-08!40;UBERON:0000475!2.44e-08!200;UBERON:0002780!7.07e-08!39;UBERON:0001890!7.07e-08!39;UBERON:0006240!7.07e-08!39;UBERON:0000064!1.72e-07!99;UBERON:0002791!3.75e-07!29;UBERON:0003528!3.75e-07!29;UBERON:0001893!3.75e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.47e-19,12;UBERON:0003057,5.47e-19,12;UBERON:0002240,4.34e-14,6;UBERON:0005174,4.34e-14,6;UBERON:0001137,4.34e-14,6;UBERON:0000073,6.57e-13,54;UBERON:0002370,7.05e-13,23;UBERON:0000974,7.05e-13,23;UBERON:0004807,7.05e-13,23;UBERON:0005058,7.05e-13,23;UBERON:0003351,7.05e-13,23;UBERON:0009113,7.05e-13,23;UBERON:0003295,7.05e-13,23;UBERON:0009722,7.05e-13,23;UBERON:0005562,7.05e-13,23;UBERON:0007690,7.05e-13,23;UBERON:0006562,3.18e-12,24;UBERON:0003408,3.18e-12,24;UBERON:0001557,3.18e-12,24;UBERON:0001042,3.18e-12,24;UBERON:0008814,3.18e-12,24;UBERON:0009145,3.18e-12,24;UBERON:0001017,9.58e-12,73;UBERON:0001948,1.01e-11,5;UBERON:0002315,1.01e-11,5;UBERON:0001016,2.78e-11,75;UBERON:0004177,3.37e-11,29;UBERON:0005057,3.37e-11,29;UBERON:0000072,1.48e-10,27;UBERON:0001049,1.57e-10,52;UBERON:0005068,1.57e-10,52;UBERON:0006241,1.57e-10,52;UBERON:0007135,1.57e-10,52;UBERON:0007811,5.53e-10,36;UBERON:0002950,1.41e-09,4;UBERON:0001891,1.41e-09,4;UBERON:0009616,1.41e-09,4;UBERON:0010286,1.41e-09,4;UBERON:0011216,3.25e-09,194;UBERON:0000077,9.17e-09,35;UBERON:0004121,1.14e-08,95;UBERON:0000924,1.14e-08,95;UBERON:0006601,1.14e-08,95;UBERON:0004684,2.81e-08,3;UBERON:0002275,2.81e-08,3;UBERON:0010371,3.89e-08,73;UBERON:0000153,7.85e-08,43;UBERON:0002346,9.27e-08,64;UBERON:0003075,9.27e-08,64;UBERON:0007284,9.27e-08,64;UBERON:0002257,1.52e-07,3;UBERON:0002038,2.52e-07,3;UBERON:0009663,2.52e-07,3;UBERON:0009661,2.52e-07,3;UBERON:0000125,2.52e-07,3;UBERON:0002308,2.52e-07,3;UBERON:0004733,4.34e-07,6;UBERON:0004732,4.34e-07,6;UBERON:0002028,4.34e-07,6;UBERON:0007277,4.34e-07,6;UBERON:0000483,5.92e-07,174;UBERON:0000119,8.61e-07,176 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0.516493293766305,0.140788722151667,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.595303031057488,3.47518329203099,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.65407546914134,0,0.194429899074283,0.279972843250725,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0.898800331555214,0.384218305321555,0.207379224616955,0,0.420649922702764,4.28476476605705,3.97563373712904,0.367472397644862,0.287536413054709,0,8.8092704799511,4.46905683298157,6.91229399653096,0.527545150920775,0.182975287204819,0.52091337055676,8.37548997004143,1.12552522006336,2.75036845998258,5.30331453852602,2.98980529678116,1.86399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0.35333957451034,2.39433813620357,0,2.54805239706646,0,0,0,0,0,1.29468941823586,0.742210695324124,0.346970653532272,0,0,0.150722640552623,0.117588707135705,0.376999773989026,0,0,0,0,0,0,0,6.73395833126558,6.28340120440365,0,0,0,0,7.33974133083631,0.915001205637253,0.251308704225729,0.347648640384553,0.511430914660661,4.77912502486988,2.43361894601636,0.101839363850316,0,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.180062129805349,0,0.95251098811859,0.640568601424249,0.281105173679186,0.776110112217047,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.617427674275707,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0.397912944082302,0.779856348476481,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0.234690248288502,0,0,0,0.315270288212382,0.221464689648775,0,0,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,25.2064426280833,19.9259867206745,0,0,0,0,0,0,0,0.566153061577665,0.404810701674894,0,1.58115111178609,0.642642632843614,0.283880170416537,0,0,0.329940245945071,0,0.242780636154981,0,0,0,1.53717573971964,0.516856586336442,0.727067458955011,0,0.948110273807448,0,0,0.680879211507576,0.18006109403131,0.517434735131018,0,0,0.178368817602071,0.164549020602121,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0.328281799490123,0.291480836629851,35.6016579860179,0,1.03193433981611,0.555583582109135,0,0,0.686334519619568,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0.648074866458964,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,2.8441000856536,0,0.205421914329655,1.16928740680016,3.58053391334963,1.19208812868759,2.16351809135944,1.18151621739662,2.3222283488074,3.20068587950999,2.82313318383153,1.36441033035653,1.25075394132428,1.28564592399726,0,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,0,0,0.920650473014354,0.572895513439397,0.343706364687375,0.685082519770642,0,0.675022500231806,1.35096360967266,0.453142408984205,1.03552062350364,0,0.399024873401031,0.170733605754134,0.486213434136588,0,0,0.44449345560323,0.206035057238894,0,0,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.229741875822453,0,0.231768651889711,0.38581844092741,0.412085900803307,0,0,0,0.715308569841963,0,0.282328141245992,0.169229215783353,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.464810523557898,0.385813221962283,0,0.233931608445408,0,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p2@Lingo4 | |||
}} |
Revision as of 03:01, 14 September 2013
Short description: | p2@Lingo4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lingo4_5end |
Coexpression cluster: | MCL_coexpression_mm9:218 |
Association with transcript: | 53bp_to_NM_177250, uc008qgb.1_5end |
EntrezGene: | Lingo4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.81e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.81e-10 | 23 |
neuron | 4.16e-09 | 33 |
neuronal stem cell | 4.16e-09 | 33 |
neuroblast | 4.16e-09 | 33 |
electrically signaling cell | 4.16e-09 | 33 |
raphe nuclei neuron | 2.81e-08 | 3 |
neuron of the ventral spinal cord | 1.52e-07 | 3 |
neuron of the substantia nigra | 2.52e-07 | 3 |
electrically responsive cell | 2.88e-07 | 39 |
electrically active cell | 2.88e-07 | 39 |
ectodermal cell | 3.21e-07 | 44 |
neurectodermal cell | 3.21e-07 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.