FFCP PHASE1:Mm9::chr4:47004633..47004654,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=242425|HGNC=|MCL_coexpression_id=1|UniProt=Q80T41|association_with_transcript=-47bp_to_NM_001081141,uc008sug.1_5end|description=CAGE_peak_4_at_Gabbr2_5end|id=chr4:47004633..47004654,-|ontology_enrichment_celltype=CL:0000117!1.96e-12!23;CL:0000337!1.96e-12!23;CL:0000540!3.07e-08!33;CL:0000047!3.07e-08!33;CL:0000031!3.07e-08!33;CL:0000404!3.07e-08!33;CL:0000221!1.17e-07!44;CL:0000133!1.17e-07!44;CL:0002319!2.78e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.76e-15,23;CL:0000337,2.76e-15,23;CL:0000540,1.14e-09,33;CL:0000047,1.14e-09,33;CL:0000031,1.14e-09,33;CL:0000404,1.14e-09,33;CL:0002610,7.97e-08,3;CL:0000393,1.06e-07,39;CL:0000211,1.06e-07,39;CL:0002614,2.19e-07,3;CL:0002612,7.01e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.00e-26!63;UBERON:0000073!2.26e-25!75;UBERON:0001016!2.26e-25!75;UBERON:0001049!7.10e-25!52;UBERON:0005068!7.10e-25!52;UBERON:0006241!7.10e-25!52;UBERON:0007135!7.10e-25!52;UBERON:0001017!9.07e-25!73;UBERON:0005743!9.07e-25!73;UBERON:0000955!4.35e-23!50;UBERON:0006238!4.35e-23!50;UBERON:0002346!5.69e-23!71;UBERON:0003075!5.69e-23!71;UBERON:0007284!5.69e-23!71;UBERON:0002616!2.32e-22!49;UBERON:0004121!4.43e-22!102;UBERON:0000924!4.43e-22!102;UBERON:0006601!4.43e-22!102;UBERON:0003056!1.20e-20!49;UBERON:0002020!1.44e-19!34;UBERON:0003080!2.93e-17!40;UBERON:0002780!2.54e-16!39;UBERON:0001890!2.54e-16!39;UBERON:0006240!2.54e-16!39;UBERON:0007811!5.40e-16!86;UBERON:0002791!3.44e-15!29;UBERON:0003528!3.44e-15!29;UBERON:0001893!3.44e-15!29;UBERON:0000153!6.28e-14!94;UBERON:0002021!3.29e-10!10;UBERON:0000411!3.29e-10!10;UBERON:0001950!3.29e-10!10;UBERON:0000956!1.26e-09!21;UBERON:0001869!1.26e-09!21;UBERON:0000203!1.26e-09!21;UBERON:0000025!1.96e-09!114;UBERON:0004111!8.10e-09!122;UBERON:0003076!2.71e-08!12;UBERON:0003057!2.71e-08!12;UBERON:0002619!4.84e-08!17;UBERON:0002420!4.35e-07!8;UBERON:0007245!4.35e-07!8;UBERON:0010009!4.35e-07!8;UBERON:0010011!4.35e-07!8;UBERON:0000454!4.35e-07!8;UBERON:0002298!5.01e-07!6;UBERON:0002240!8.31e-07!6;UBERON:0005174!8.31e-07!6;UBERON:0001137!8.31e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-35,54;UBERON:0001049,7.55e-32,52;UBERON:0005068,7.55e-32,52;UBERON:0006241,7.55e-32,52;UBERON:0007135,7.55e-32,52;UBERON:0001017,8.06e-30,73;UBERON:0001016,8.24e-29,75;UBERON:0002346,2.84e-26,64;UBERON:0003075,2.84e-26,64;UBERON:0007284,2.84e-26,64;UBERON:0002020,1.29e-25,34;UBERON:0004121,1.88e-22,95;UBERON:0000924,1.88e-22,95;UBERON:0006601,1.88e-22,95;UBERON:0002616,3.01e-22,46;UBERON:0010371,4.10e-22,73;UBERON:0000955,1.21e-21,47;UBERON:0006238,1.21e-21,47;UBERON:0003528,1.53e-17,29;UBERON:0002791,1.53e-17,29;UBERON:0001893,1.53e-17,29;UBERON:0003080,3.19e-17,40;UBERON:0000025,3.77e-17,114;UBERON:0003076,4.60e-17,12;UBERON:0003057,4.60e-17,12;UBERON:0002021,8.32e-17,10;UBERON:0000411,8.32e-17,10;UBERON:0001950,8.32e-17,10;UBERON:0010314,5.20e-16,92;UBERON:0002780,1.06e-15,39;UBERON:0001890,1.06e-15,39;UBERON:0006240,1.06e-15,39;UBERON:0004111,1.73e-15,122;UBERON:0003056,1.44e-14,49;UBERON:0002619,2.00e-13,17;UBERON:0002240,9.98e-13,6;UBERON:0005174,9.98e-13,6;UBERON:0001137,9.98e-13,6;UBERON:0000956,2.19e-12,21;UBERON:0001869,2.19e-12,21;UBERON:0000203,2.19e-12,21;UBERON:0001948,9.31e-11,5;UBERON:0002315,9.31e-11,5;UBERON:0011216,1.11e-10,194;UBERON:0002950,1.57e-09,4;UBERON:0001891,1.57e-09,4;UBERON:0009616,1.57e-09,4;UBERON:0010286,1.57e-09,4;UBERON:0000483,3.86e-09,174;UBERON:0000119,6.10e-09,176;UBERON:0004684,7.97e-08,3;UBERON:0002275,7.97e-08,3;UBERON:0002038,2.19e-07,3;UBERON:0009663,2.19e-07,3;UBERON:0009661,2.19e-07,3;UBERON:0000125,2.19e-07,3;UBERON:0002308,2.19e-07,3;UBERON:0002257,7.01e-07,3|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0.311068836925433,0.135005938331691,0.210324961351382,4.28476476605705,3.3130281142742,0.244981598429908,0,0,3.30347642998166,8.93811366596314,9.06278546211836,0.527545150920775,1.46380229763855,0.52091337055676,3.90856198601933,3.37657566019008,3.51435969886663,4.12480019663135,2.98980529678116,1.4911955666024,0.075726193333184,0.0755715601067855,0,0,2.03991400112325,1.61910957491345,0,0.896053774194671,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484875253135222,0,9.36898550436951,9.63454851341893,0,0,0,0,6.29120685500255,1.83000241127451,0.502617408451458,1.91206752211504,2.04572365864264,5.61027720310812,5.19172041816825,0,0,0,0.420883711772948,0,0.229902104433473,0.180062129805349,0.30140963567143,0.612328492361951,1.15302348256365,0.749613796477831,0.776110112217047,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,1.3377599609307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0,1.1858105083486,0,0,0,0,0,0,0,0,0,5.75072826109418,1.48856379067401,1.5601883655728,0.252578877947112,0.538192240565737,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37156238974363,3.28192722458169,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0.713475270408282,0.822745103010605,0.913394847343798,0,0,0,0,0.161464426695906,0,0,0,0,3.70850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,3.68260189205742,9.73922372846974,2.92150409984269,0.685082519770642,7.55393897389701,2.02506750069542,3.15224842256954,3.62513927187364,3.10656187051092,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0.320919209591815,0.758091635291392,0.25347929989024,0.188626341386076,0.468207537349412,0.256100609619477,0.34461281373368,0,0.115884325944855,0.38581844092741,0,0.735994600671987,0,0,0.476872379894642,0,0.376437521661322,0.0846146078916765,0,0.526139422875686,0,0.561142271657738,0.830445126869219,0.591026894253381,0,0.464810523557898,0.964533054905707,0.749431733813838,0.701794825336225,0.214871054048298,0.191288332068843,0,0|short_description=p4@Gabbr2}} | ||
|EntrezGene=242425 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80T41 | |||
|association_with_transcript=-47bp_to_NM_001081141,uc008sug.1_5end | |||
|description=CAGE_peak_4_at_Gabbr2_5end | |||
|id=chr4:47004633..47004654,- | |||
|ontology_enrichment_celltype=CL:0000117!1.96e-12!23;CL:0000337!1.96e-12!23;CL:0000540!3.07e-08!33;CL:0000047!3.07e-08!33;CL:0000031!3.07e-08!33;CL:0000404!3.07e-08!33;CL:0000221!1.17e-07!44;CL:0000133!1.17e-07!44;CL:0002319!2.78e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.76e-15,23;CL:0000337,2.76e-15,23;CL:0000540,1.14e-09,33;CL:0000047,1.14e-09,33;CL:0000031,1.14e-09,33;CL:0000404,1.14e-09,33;CL:0002610,7.97e-08,3;CL:0000393,1.06e-07,39;CL:0000211,1.06e-07,39;CL:0002614,2.19e-07,3;CL:0002612,7.01e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.00e-26!63;UBERON:0000073!2.26e-25!75;UBERON:0001016!2.26e-25!75;UBERON:0001049!7.10e-25!52;UBERON:0005068!7.10e-25!52;UBERON:0006241!7.10e-25!52;UBERON:0007135!7.10e-25!52;UBERON:0001017!9.07e-25!73;UBERON:0005743!9.07e-25!73;UBERON:0000955!4.35e-23!50;UBERON:0006238!4.35e-23!50;UBERON:0002346!5.69e-23!71;UBERON:0003075!5.69e-23!71;UBERON:0007284!5.69e-23!71;UBERON:0002616!2.32e-22!49;UBERON:0004121!4.43e-22!102;UBERON:0000924!4.43e-22!102;UBERON:0006601!4.43e-22!102;UBERON:0003056!1.20e-20!49;UBERON:0002020!1.44e-19!34;UBERON:0003080!2.93e-17!40;UBERON:0002780!2.54e-16!39;UBERON:0001890!2.54e-16!39;UBERON:0006240!2.54e-16!39;UBERON:0007811!5.40e-16!86;UBERON:0002791!3.44e-15!29;UBERON:0003528!3.44e-15!29;UBERON:0001893!3.44e-15!29;UBERON:0000153!6.28e-14!94;UBERON:0002021!3.29e-10!10;UBERON:0000411!3.29e-10!10;UBERON:0001950!3.29e-10!10;UBERON:0000956!1.26e-09!21;UBERON:0001869!1.26e-09!21;UBERON:0000203!1.26e-09!21;UBERON:0000025!1.96e-09!114;UBERON:0004111!8.10e-09!122;UBERON:0003076!2.71e-08!12;UBERON:0003057!2.71e-08!12;UBERON:0002619!4.84e-08!17;UBERON:0002420!4.35e-07!8;UBERON:0007245!4.35e-07!8;UBERON:0010009!4.35e-07!8;UBERON:0010011!4.35e-07!8;UBERON:0000454!4.35e-07!8;UBERON:0002298!5.01e-07!6;UBERON:0002240!8.31e-07!6;UBERON:0005174!8.31e-07!6;UBERON:0001137!8.31e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.35e-35,54;UBERON:0001049,7.55e-32,52;UBERON:0005068,7.55e-32,52;UBERON:0006241,7.55e-32,52;UBERON:0007135,7.55e-32,52;UBERON:0001017,8.06e-30,73;UBERON:0001016,8.24e-29,75;UBERON:0002346,2.84e-26,64;UBERON:0003075,2.84e-26,64;UBERON:0007284,2.84e-26,64;UBERON:0002020,1.29e-25,34;UBERON:0004121,1.88e-22,95;UBERON:0000924,1.88e-22,95;UBERON:0006601,1.88e-22,95;UBERON:0002616,3.01e-22,46;UBERON:0010371,4.10e-22,73;UBERON:0000955,1.21e-21,47;UBERON:0006238,1.21e-21,47;UBERON:0003528,1.53e-17,29;UBERON:0002791,1.53e-17,29;UBERON:0001893,1.53e-17,29;UBERON:0003080,3.19e-17,40;UBERON:0000025,3.77e-17,114;UBERON:0003076,4.60e-17,12;UBERON:0003057,4.60e-17,12;UBERON:0002021,8.32e-17,10;UBERON:0000411,8.32e-17,10;UBERON:0001950,8.32e-17,10;UBERON:0010314,5.20e-16,92;UBERON:0002780,1.06e-15,39;UBERON:0001890,1.06e-15,39;UBERON:0006240,1.06e-15,39;UBERON:0004111,1.73e-15,122;UBERON:0003056,1.44e-14,49;UBERON:0002619,2.00e-13,17;UBERON:0002240,9.98e-13,6;UBERON:0005174,9.98e-13,6;UBERON:0001137,9.98e-13,6;UBERON:0000956,2.19e-12,21;UBERON:0001869,2.19e-12,21;UBERON:0000203,2.19e-12,21;UBERON:0001948,9.31e-11,5;UBERON:0002315,9.31e-11,5;UBERON:0011216,1.11e-10,194;UBERON:0002950,1.57e-09,4;UBERON:0001891,1.57e-09,4;UBERON:0009616,1.57e-09,4;UBERON:0010286,1.57e-09,4;UBERON:0000483,3.86e-09,174;UBERON:0000119,6.10e-09,176;UBERON:0004684,7.97e-08,3;UBERON:0002275,7.97e-08,3;UBERON:0002038,2.19e-07,3;UBERON:0009663,2.19e-07,3;UBERON:0009661,2.19e-07,3;UBERON:0000125,2.19e-07,3;UBERON:0002308,2.19e-07,3;UBERON:0002257,7.01e-07,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,0,0,0,0,0,0,0.599200221036809,0.768436610643109,0.311068836925433,0.135005938331691,0.210324961351382,4.28476476605705,3.3130281142742,0.244981598429908,0,0,3.30347642998166,8.93811366596314,9.06278546211836,0.527545150920775,1.46380229763855,0.52091337055676,3.90856198601933,3.37657566019008,3.51435969886663,4.12480019663135,2.98980529678116,1.4911955666024,0.075726193333184,0.0755715601067855,0,0,2.03991400112325,1.61910957491345,0,0.896053774194671,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484875253135222,0,9.36898550436951,9.63454851341893,0,0,0,0,6.29120685500255,1.83000241127451,0.502617408451458,1.91206752211504,2.04572365864264,5.61027720310812,5.19172041816825,0,0,0,0.420883711772948,0,0.229902104433473,0.180062129805349,0.30140963567143,0.612328492361951,1.15302348256365,0.749613796477831,0.776110112217047,0,0,0,0,0,0,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,1.3377599609307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0,1.1858105083486,0,0,0,0,0,0,0,0,0,5.75072826109418,1.48856379067401,1.5601883655728,0.252578877947112,0.538192240565737,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37156238974363,3.28192722458169,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0.713475270408282,0.822745103010605,0.913394847343798,0,0,0,0,0.161464426695906,0,0,0,0,3.70850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,3.68260189205742,9.73922372846974,2.92150409984269,0.685082519770642,7.55393897389701,2.02506750069542,3.15224842256954,3.62513927187364,3.10656187051092,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0.320919209591815,0.758091635291392,0.25347929989024,0.188626341386076,0.468207537349412,0.256100609619477,0.34461281373368,0,0.115884325944855,0.38581844092741,0,0.735994600671987,0,0,0.476872379894642,0,0.376437521661322,0.0846146078916765,0,0.526139422875686,0,0.561142271657738,0.830445126869219,0.591026894253381,0,0.464810523557898,0.964533054905707,0.749431733813838,0.701794825336225,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p4@Gabbr2 | |||
}} |
Revision as of 05:07, 14 September 2013
Short description: | p4@Gabbr2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gabbr2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -47bp_to_NM_001081141, uc008sug.1_5end |
EntrezGene: | Gabbr2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.76e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.76e-15 | 23 |
neuron | 1.14e-09 | 33 |
neuronal stem cell | 1.14e-09 | 33 |
neuroblast | 1.14e-09 | 33 |
electrically signaling cell | 1.14e-09 | 33 |
raphe nuclei neuron | 7.97e-08 | 3 |
electrically responsive cell | 1.06e-07 | 39 |
electrically active cell | 1.06e-07 | 39 |
neuron of the substantia nigra | 2.19e-07 | 3 |
neuron of the ventral spinal cord | 7.01e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.