FFCP PHASE1:Mm9::chr8:108225524..108225593,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56513|HGNC=|MCL_coexpression_id=60|UniProt=Q9Z101,Q3TY70|association_with_transcript=0bp_to_ENSMUST00000093195,NM_001047435,NM_019695,uc009ndv.1,uc009ndw.1,uc009ndx.1_5end|description=CAGE_peak_2_at_Pard6a_5end|id=chr8:108225524..108225593,+|ontology_enrichment_celltype=CL:0000221!1.87e-18!44;CL:0000133!1.87e-18!44;CL:0002319!4.37e-18!43;CL:0000540!1.11e-15!33;CL:0000047!1.11e-15!33;CL:0000031!1.11e-15!33;CL:0000404!1.11e-15!33;CL:0000055!1.59e-13!50;CL:0000117!2.07e-13!23;CL:0000337!2.07e-13!23;CL:0000393!7.75e-12!39;CL:0000211!7.75e-12!39|ontology_enrichment_celltype_v019_2=CL:0000221,2.41e-22,44;CL:0000133,2.41e-22,44;CL:0002319,8.91e-22,43;CL:0000540,1.78e-21,33;CL:0000047,1.78e-21,33;CL:0000031,1.78e-21,33;CL:0000404,1.78e-21,33;CL:0000117,3.67e-20,23;CL:0000337,3.67e-20,23;CL:0000393,1.94e-16,39;CL:0000211,1.94e-16,39;CL:0002321,5.36e-10,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.23e-37!75;UBERON:0001016!2.23e-37!75;UBERON:0001017!2.33e-37!73;UBERON:0005743!2.33e-37!73;UBERON:0004121!1.23e-30!102;UBERON:0000924!1.23e-30!102;UBERON:0006601!1.23e-30!102;UBERON:0001049!1.11e-27!52;UBERON:0005068!1.11e-27!52;UBERON:0006241!1.11e-27!52;UBERON:0007135!1.11e-27!52;UBERON:0002346!1.45e-27!71;UBERON:0003075!1.45e-27!71;UBERON:0007284!1.45e-27!71;UBERON:0000033!1.01e-26!63;UBERON:0000955!4.29e-26!50;UBERON:0006238!4.29e-26!50;UBERON:0002616!1.46e-25!49;UBERON:0003056!1.37e-20!49;UBERON:0003080!2.21e-20!40;UBERON:0002780!8.41e-20!39;UBERON:0001890!8.41e-20!39;UBERON:0006240!8.41e-20!39;UBERON:0002020!1.86e-19!34;UBERON:0007811!7.97e-18!86;UBERON:0002791!3.45e-16!29;UBERON:0003528!3.45e-16!29;UBERON:0001893!3.45e-16!29;UBERON:0000153!1.22e-15!94;UBERON:0000956!6.15e-12!21;UBERON:0001869!6.15e-12!21;UBERON:0000203!6.15e-12!21;UBERON:0002619!4.34e-10!17;UBERON:0002021!7.87e-08!10;UBERON:0000411!7.87e-08!10;UBERON:0001950!7.87e-08!10;UBERON:0003076!9.28e-08!12;UBERON:0003057!9.28e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.09e-53,73;UBERON:0001016,4.89e-51,75;UBERON:0000073,1.09e-42,54;UBERON:0004121,3.87e-41,95;UBERON:0000924,3.87e-41,95;UBERON:0006601,3.87e-41,95;UBERON:0001049,1.92e-40,52;UBERON:0005068,1.92e-40,52;UBERON:0006241,1.92e-40,52;UBERON:0007135,1.92e-40,52;UBERON:0002346,8.79e-36,64;UBERON:0003075,8.79e-36,64;UBERON:0007284,8.79e-36,64;UBERON:0000955,7.84e-35,47;UBERON:0006238,7.84e-35,47;UBERON:0002616,5.16e-34,46;UBERON:0010371,1.47e-31,73;UBERON:0003080,4.21e-30,40;UBERON:0002780,3.42e-29,39;UBERON:0001890,3.42e-29,39;UBERON:0006240,3.42e-29,39;UBERON:0002020,1.36e-28,34;UBERON:0003056,2.45e-25,49;UBERON:0003528,1.77e-23,29;UBERON:0002791,1.77e-23,29;UBERON:0001893,1.77e-23,29;UBERON:0010314,8.95e-23,92;UBERON:0000956,8.10e-17,21;UBERON:0001869,8.10e-17,21;UBERON:0000203,8.10e-17,21;UBERON:0002619,6.48e-14,17;UBERON:0002021,2.09e-11,10;UBERON:0000411,2.09e-11,10;UBERON:0001950,2.09e-11,10;UBERON:0003076,3.17e-10,12;UBERON:0003057,3.17e-10,12;UBERON:0004111,5.96e-10,122;UBERON:0000025,1.87e-09,114;UBERON:0011216,3.39e-09,194;UBERON:0002420,9.04e-08,8;UBERON:0007245,9.04e-08,8;UBERON:0010009,9.04e-08,8;UBERON:0010011,9.04e-08,8;UBERON:0000454,9.04e-08,8;UBERON:0002240,4.56e-07,6;UBERON:0005174,4.56e-07,6;UBERON:0001137,4.56e-07,6|phase1_expression=2.7225304007815,0,0,0,0.500895729946347,0.16787927191189,0.233612640595526,0.774739940649458,0.140788722151667,0.70219357896598,0.171217968225505,0.159544317990673,0.513602189793617,0.699363219351979,0.666219523631325,0.607425802169478,0,0,0.685572168028694,0.42438965179803,4.93251082876205,0.297872853602656,0.783599367416806,0,0.45881856213434,0.57423196411502,0,0.215471232685889,0.380046838912748,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0.550640256485045,0.782391344348039,4.57852828398938,2.85592037554813,0.777719596297134,1.39986421625363,5.75010257459886,0.838913030288682,3.62681071005672,1.68046899571232,0.257259436035947,0,0,6.27181028664753,6.34789175126439,5.70448263155561,0,0.889294796111139,2.2497492932035,0.988866362566974,0.7104801149461,2.99600110518405,4.61061966385865,3.7328260431052,5.40023753326763,4.41682418837902,12.8542942981712,11.7060326704355,4.04219637409348,3.64212789869298,5.51531271966013,11.0115880999389,7.66124028511126,8.90917892886212,5.01167893374737,5.21479568533735,6.25096044668112,15.9134309430787,5.06486349028512,10.0846843532695,9.72274332063103,8.68467252874528,9.31997229126503,0.757261933331841,0.831287161174641,0,0,0,0,0.649776417447669,0,1.12355536105401,0.511290967734173,0.519572009205738,1.06001872353102,2.11265129665021,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,1.1418387971906,0.258937883647172,1.7813056687779,0.520455980298408,0.304465478312141,0.230615497256059,0.753613202763113,0.823120949949934,0.753999547978053,0.247194967734374,0.578397427679647,0,0,0.220841518460394,0,1.86391761218122,21.6657789788545,21.7824575085993,0.255457055208591,0.11981512450592,0,0.254140454146129,6.44099749440738,7.77751024791665,3.8952849154988,8.34356736922927,6.90431734791892,5.194701113989,5.51620294430376,0.101839363850316,0.373220911830279,0.505445516867349,0.420883711772948,0.780722657776222,0.919608417733892,0.720248519221397,0.90422890701429,1.02054748726992,0.896796041993948,1.12442069471675,1.55222022443409,0,0.378212160335639,0.175951124163949,0.657587197282725,0.834141747676794,0.348252166522167,0.411564272815887,0.796137067273973,0,0,0.568326998791185,0,0.234526059981096,0.36012412292203,0.710234206755631,0.393528463494808,0.154267112887378,1.39520366850245,0,0.583826711835847,0.329119699826961,0.32833492815819,0.0810688095458557,0.438599962275997,0,0.536825675041487,6.09840850835969,4.11618449517138,0,0.264450566663544,0,0.464473343720877,0.257734922644187,0.201683524623343,0.444756087689741,0.380451252225118,0,0,0.754005626400808,0,0.38992817423824,0,0.216138049874694,0,0.569003702859245,0.456994050438915,0,0.203651327845314,0.193952487167626,0.350679099451593,0.442655759869801,1.18088118383682,0.627994911365499,1.23397163921801,0,0.333690211432188,0,0.224862112384854,0.202860121388503,0,0,0.287696137450811,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0.488894929326078,0.169745085775188,0,0.335012514883631,0.238043640886014,0,0.472905432318573,0,0.797273843287435,0.491589944147214,0.345369963731791,0.144649058581512,0,2.17562273527484,0,0,7.86697890940181,6.79827782234778,0.327869890753351,0.252470927204373,0.94652465824877,1.95219372148319,1.93881057959519,1.19484398976276,1.33679204449436,1.13230612315533,2.02405350837447,0.876767573733936,2.37172666767914,5.14114106274891,0.567760340833074,0.534196811001766,1.14020871547503,0.494910368917606,0,0,0.604647113929502,0.377210159511796,0.295301892880773,0,0.516856586336442,0.727067458955011,0.356497378384721,0.316036757935816,1.05418608574999,0,3.40439605753788,1.08036656418786,2.06973894052407,1.92903331528433,1.77340233642274,2.31879462882692,1.48094118541909,5.17590413494819,0,1.0591603543191,1.10264199027481,0.16488625294148,0.161464426695906,0.120625849856312,0.119372344003136,0.328281799490123,0,6.67531087237835,0.341741761595705,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0,0.139951452323658,0.967399816630967,1.90934123603023,0.158167996790568,0.406638934253697,0.324016022465404,0.209088296014469,0,0.404593039154462,0.661227645802687,2.87931536182433,0.648074866458964,1.24267862617385,25.3661822407886,0.448549638131936,0.330916980914195,0.777804753376191,0.516639293910924,1.01373675294467,0.117357238645754,0.781226309063701,1.67774951081137,1.44950472495604,4.89651010638371,0.632022241256357,0.405450430580328,0.308132871494482,0.129920822977795,0.358053391334963,0.596044064343795,0.120195449519969,0.147689527174577,0.504832249740738,0.609654453239999,0.201652370273681,0.974578807397524,0.384847366561318,0.584384510907845,0.226730383615211,1.10992976687032,0.448569283047378,0.671538465456314,0.386379188064381,0.375364950902364,0.549454872801795,0.214368379079066,0.501572104035363,11.8597886949584,12.889106622201,8.59343270159095,14.0919609521824,15.0718154349541,9.06472676867641,15.5255175053315,12.6089936902782,9.5159905886683,12.9440077937955,1.24544817101012,0.399024873401031,1.53660245178721,0.729320151204882,0.628839487883947,0.551530525350042,1.11123363900808,0.412070114477788,0.320919209591815,0.758091635291392,0.760437899670719,0.754505365544305,0.842773567228942,0.576226371643824,0.746661096422973,0.952587382566147,0.347652977834566,0.77163688185482,0.824171801606613,0.294397840268795,1.37147700954166,0.887379030796687,1.1921809497366,0.726732083161643,0.658765662907314,0.761531471025089,0.914639864363863,0.526139422875686,0.814824683075171,0,1.06771516311757,0.886540341380071,0,1.08455788830176,0.964533054905707,2.74791635731741,0.467863216890817,0.429742108096597,0.956441660344217,0.441182838239031,0.695603506861264|short_description=p2@Pard6a}} | ||
|EntrezGene=56513 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q9Z101,Q3TY70 | |||
|association_with_transcript=0bp_to_ENSMUST00000093195,NM_001047435,NM_019695,uc009ndv.1,uc009ndw.1,uc009ndx.1_5end | |||
|description=CAGE_peak_2_at_Pard6a_5end | |||
|id=chr8:108225524..108225593,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.87e-18!44;CL:0000133!1.87e-18!44;CL:0002319!4.37e-18!43;CL:0000540!1.11e-15!33;CL:0000047!1.11e-15!33;CL:0000031!1.11e-15!33;CL:0000404!1.11e-15!33;CL:0000055!1.59e-13!50;CL:0000117!2.07e-13!23;CL:0000337!2.07e-13!23;CL:0000393!7.75e-12!39;CL:0000211!7.75e-12!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.41e-22,44;CL:0000133,2.41e-22,44;CL:0002319,8.91e-22,43;CL:0000540,1.78e-21,33;CL:0000047,1.78e-21,33;CL:0000031,1.78e-21,33;CL:0000404,1.78e-21,33;CL:0000117,3.67e-20,23;CL:0000337,3.67e-20,23;CL:0000393,1.94e-16,39;CL:0000211,1.94e-16,39;CL:0002321,5.36e-10,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.23e-37!75;UBERON:0001016!2.23e-37!75;UBERON:0001017!2.33e-37!73;UBERON:0005743!2.33e-37!73;UBERON:0004121!1.23e-30!102;UBERON:0000924!1.23e-30!102;UBERON:0006601!1.23e-30!102;UBERON:0001049!1.11e-27!52;UBERON:0005068!1.11e-27!52;UBERON:0006241!1.11e-27!52;UBERON:0007135!1.11e-27!52;UBERON:0002346!1.45e-27!71;UBERON:0003075!1.45e-27!71;UBERON:0007284!1.45e-27!71;UBERON:0000033!1.01e-26!63;UBERON:0000955!4.29e-26!50;UBERON:0006238!4.29e-26!50;UBERON:0002616!1.46e-25!49;UBERON:0003056!1.37e-20!49;UBERON:0003080!2.21e-20!40;UBERON:0002780!8.41e-20!39;UBERON:0001890!8.41e-20!39;UBERON:0006240!8.41e-20!39;UBERON:0002020!1.86e-19!34;UBERON:0007811!7.97e-18!86;UBERON:0002791!3.45e-16!29;UBERON:0003528!3.45e-16!29;UBERON:0001893!3.45e-16!29;UBERON:0000153!1.22e-15!94;UBERON:0000956!6.15e-12!21;UBERON:0001869!6.15e-12!21;UBERON:0000203!6.15e-12!21;UBERON:0002619!4.34e-10!17;UBERON:0002021!7.87e-08!10;UBERON:0000411!7.87e-08!10;UBERON:0001950!7.87e-08!10;UBERON:0003076!9.28e-08!12;UBERON:0003057!9.28e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.09e-53,73;UBERON:0001016,4.89e-51,75;UBERON:0000073,1.09e-42,54;UBERON:0004121,3.87e-41,95;UBERON:0000924,3.87e-41,95;UBERON:0006601,3.87e-41,95;UBERON:0001049,1.92e-40,52;UBERON:0005068,1.92e-40,52;UBERON:0006241,1.92e-40,52;UBERON:0007135,1.92e-40,52;UBERON:0002346,8.79e-36,64;UBERON:0003075,8.79e-36,64;UBERON:0007284,8.79e-36,64;UBERON:0000955,7.84e-35,47;UBERON:0006238,7.84e-35,47;UBERON:0002616,5.16e-34,46;UBERON:0010371,1.47e-31,73;UBERON:0003080,4.21e-30,40;UBERON:0002780,3.42e-29,39;UBERON:0001890,3.42e-29,39;UBERON:0006240,3.42e-29,39;UBERON:0002020,1.36e-28,34;UBERON:0003056,2.45e-25,49;UBERON:0003528,1.77e-23,29;UBERON:0002791,1.77e-23,29;UBERON:0001893,1.77e-23,29;UBERON:0010314,8.95e-23,92;UBERON:0000956,8.10e-17,21;UBERON:0001869,8.10e-17,21;UBERON:0000203,8.10e-17,21;UBERON:0002619,6.48e-14,17;UBERON:0002021,2.09e-11,10;UBERON:0000411,2.09e-11,10;UBERON:0001950,2.09e-11,10;UBERON:0003076,3.17e-10,12;UBERON:0003057,3.17e-10,12;UBERON:0004111,5.96e-10,122;UBERON:0000025,1.87e-09,114;UBERON:0011216,3.39e-09,194;UBERON:0002420,9.04e-08,8;UBERON:0007245,9.04e-08,8;UBERON:0010009,9.04e-08,8;UBERON:0010011,9.04e-08,8;UBERON:0000454,9.04e-08,8;UBERON:0002240,4.56e-07,6;UBERON:0005174,4.56e-07,6;UBERON:0001137,4.56e-07,6 | |||
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| |||
|short_description=p2@Pard6a | |||
}} |
Revision as of 14:37, 14 September 2013
Short description: | p2@Pard6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pard6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000093195, NM_001047435, NM_019695, uc009ndv.1, uc009ndw.1, uc009ndx.1_5end |
EntrezGene: | Pard6a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.41e-22 | 44 |
neurectodermal cell | 2.41e-22 | 44 |
neural cell | 8.91e-22 | 43 |
neuron | 1.78e-21 | 33 |
neuronal stem cell | 1.78e-21 | 33 |
neuroblast | 1.78e-21 | 33 |
electrically signaling cell | 1.78e-21 | 33 |
CNS neuron (sensu Vertebrata) | 3.67e-20 | 23 |
neuroblast (sensu Vertebrata) | 3.67e-20 | 23 |
electrically responsive cell | 1.94e-16 | 39 |
electrically active cell | 1.94e-16 | 39 |
embryonic cell | 5.36e-10 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.