FFCP PHASE1:Mm9::chr5:38550963..38550982,-: Difference between revisions
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{{FFCP|EntrezGene=18196|HGNC=|MCL_coexpression_id=1|UniProt=Q62092|association_with_transcript=-257bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end|description=CAGE_peak_6_at_Nsg1_5end|id=chr5:38550963..38550982,-|ontology_enrichment_celltype=CL:0000117!2.40e-16!23;CL:0000337!2.40e-16!23;CL:0000393!1.64e-15!39;CL:0000211!1.64e-15!39;CL:0000540!3.33e-15!33;CL:0000047!3.33e-15!33;CL:0000031!3.33e-15!33;CL:0000404!3.33e-15!33;CL:0000221!8.34e-14!44;CL:0000133!8.34e-14!44;CL:0000055!9.18e-14!50;CL:0002319!9.63e-14!43;CL:0002321!5.75e-07!70;CL:0000220!5.75e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-28,23;CL:0000337,1.09e-28,23;CL:0000540,1.93e-18,33;CL:0000047,1.93e-18,33;CL:0000031,1.93e-18,33;CL:0000404,1.93e-18,33;CL:0000393,1.79e-16,39;CL:0000211,1.79e-16,39;CL:0002319,5.46e-13,43;CL:0000221,1.39e-12,44;CL:0000133,1.39e-12,44;CL:0002609,1.92e-10,6;CL:0002321,5.79e-07,70;CL:0002614,6.50e-07,3;CL:0002610,8.16e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.47e-34!73;UBERON:0005743!3.47e-34!73;UBERON:0000073!2.44e-33!75;UBERON:0001016!2.44e-33!75;UBERON:0001049!1.02e-28!52;UBERON:0005068!1.02e-28!52;UBERON:0006241!1.02e-28!52;UBERON:0007135!1.02e-28!52;UBERON:0004121!1.15e-28!102;UBERON:0000924!1.15e-28!102;UBERON:0006601!1.15e-28!102;UBERON:0002346!1.22e-28!71;UBERON:0003075!1.22e-28!71;UBERON:0007284!1.22e-28!71;UBERON:0000955!4.33e-28!50;UBERON:0006238!4.33e-28!50;UBERON:0002616!1.87e-27!49;UBERON:0000033!1.65e-26!63;UBERON:0002020!8.53e-23!34;UBERON:0003080!2.66e-22!40;UBERON:0003056!3.55e-22!49;UBERON:0002780!1.30e-21!39;UBERON:0001890!1.30e-21!39;UBERON:0006240!1.30e-21!39;UBERON:0002791!3.96e-20!29;UBERON:0003528!3.96e-20!29;UBERON:0001893!3.96e-20!29;UBERON:0000956!2.97e-14!21;UBERON:0001869!2.97e-14!21;UBERON:0000203!2.97e-14!21;UBERON:0007811!1.75e-13!86;UBERON:0000153!1.91e-13!94;UBERON:0002619!2.33e-11!17;UBERON:0002021!1.61e-09!10;UBERON:0000411!1.61e-09!10;UBERON:0001950!1.61e-09!10;UBERON:0000025!7.58e-08!114;UBERON:0004111!2.64e-07!122;UBERON:0002420!4.58e-07!8;UBERON:0007245!4.58e-07!8;UBERON:0010009!4.58e-07!8;UBERON:0010011!4.58e-07!8;UBERON:0000454!4.58e-07!8;UBERON:0003076!7.14e-07!12;UBERON:0003057!7.14e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.08e-46,54;UBERON:0001049,1.21e-42,52;UBERON:0005068,1.21e-42,52;UBERON:0006241,1.21e-42,52;UBERON:0007135,1.21e-42,52;UBERON:0002020,3.70e-40,34;UBERON:0003528,1.25e-38,29;UBERON:0002791,1.25e-38,29;UBERON:0001893,1.25e-38,29;UBERON:0001017,1.45e-38,73;UBERON:0002616,2.02e-38,46;UBERON:0000955,1.98e-37,47;UBERON:0006238,1.98e-37,47;UBERON:0001016,2.73e-37,75;UBERON:0003080,7.07e-34,40;UBERON:0002346,5.20e-33,64;UBERON:0003075,5.20e-33,64;UBERON:0007284,5.20e-33,64;UBERON:0002780,2.18e-32,39;UBERON:0001890,2.18e-32,39;UBERON:0006240,2.18e-32,39;UBERON:0010371,7.29e-28,73;UBERON:0000956,1.04e-27,21;UBERON:0001869,1.04e-27,21;UBERON:0000203,1.04e-27,21;UBERON:0004121,1.80e-27,95;UBERON:0000924,1.80e-27,95;UBERON:0006601,1.80e-27,95;UBERON:0003056,2.64e-26,49;UBERON:0002619,5.17e-21,17;UBERON:0010314,2.63e-20,92;UBERON:0002021,2.89e-20,10;UBERON:0000411,2.89e-20,10;UBERON:0001950,2.89e-20,10;UBERON:0000025,8.88e-16,114;UBERON:0004111,3.65e-14,122;UBERON:0002420,1.16e-11,8;UBERON:0007245,1.16e-11,8;UBERON:0010009,1.16e-11,8;UBERON:0010011,1.16e-11,8;UBERON:0000454,1.16e-11,8;UBERON:0003076,9.39e-09,12;UBERON:0003057,9.39e-09,12;UBERON:0011216,1.28e-08,194;UBERON:0002950,2.48e-08,4;UBERON:0001891,2.48e-08,4;UBERON:0009616,2.48e-08,4;UBERON:0010286,2.48e-08,4;UBERON:0000483,2.53e-07,174;UBERON:0000119,3.83e-07,176;UBERON:0002038,6.50e-07,3;UBERON:0009663,6.50e-07,3;UBERON:0009661,6.50e-07,3;UBERON:0000125,6.50e-07,3;UBERON:0002308,6.50e-07,3;UBERON:0004684,8.16e-07,3;UBERON:0002275,8.16e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.912392380975631,1.46837401729345,0.782391344348039,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0,0,3.03474691289397,4.7609188134483,0.633831403506179,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,0.384218305321555,1.55534418462716,2.16009501330705,2.3135745748652,0.285650984403804,1.54607978666129,1.22490799214954,2.01275489138296,1.83843757322004,2.20231761998777,4.34136949489638,3.07213066512487,2.1101806036831,1.82975287204819,2.08365348222704,6.42120897703176,3.37657566019008,1.83357897332172,1.47314292736834,1.28134512719193,0.931997229126503,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.421333260395256,0.511290967734173,0.519572009205738,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,1.46390398505774,3.35114730901528,0,0,0,0,1.64769703345305,10.0650132620098,0.753926112677186,5.04090528557602,4.60287823194595,2.90903262383384,6.327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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18196 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q62092 | |||
|association_with_transcript=-257bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end | |||
|cluster_id=chr5:38550963..38550982,- | |||
|description=CAGE_peak_6_at_Nsg1_5end | |||
|id=chr5:38550963..38550982,- | |||
|ontology_enrichment_celltype=CL:0000117!2.40e-16!23;CL:0000337!2.40e-16!23;CL:0000393!1.64e-15!39;CL:0000211!1.64e-15!39;CL:0000540!3.33e-15!33;CL:0000047!3.33e-15!33;CL:0000031!3.33e-15!33;CL:0000404!3.33e-15!33;CL:0000221!8.34e-14!44;CL:0000133!8.34e-14!44;CL:0000055!9.18e-14!50;CL:0002319!9.63e-14!43;CL:0002321!5.75e-07!70;CL:0000220!5.75e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-28,23;CL:0000337,1.09e-28,23;CL:0000540,1.93e-18,33;CL:0000047,1.93e-18,33;CL:0000031,1.93e-18,33;CL:0000404,1.93e-18,33;CL:0000393,1.79e-16,39;CL:0000211,1.79e-16,39;CL:0002319,5.46e-13,43;CL:0000221,1.39e-12,44;CL:0000133,1.39e-12,44;CL:0002609,1.92e-10,6;CL:0002321,5.79e-07,70;CL:0002614,6.50e-07,3;CL:0002610,8.16e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.47e-34!73;UBERON:0005743!3.47e-34!73;UBERON:0000073!2.44e-33!75;UBERON:0001016!2.44e-33!75;UBERON:0001049!1.02e-28!52;UBERON:0005068!1.02e-28!52;UBERON:0006241!1.02e-28!52;UBERON:0007135!1.02e-28!52;UBERON:0004121!1.15e-28!102;UBERON:0000924!1.15e-28!102;UBERON:0006601!1.15e-28!102;UBERON:0002346!1.22e-28!71;UBERON:0003075!1.22e-28!71;UBERON:0007284!1.22e-28!71;UBERON:0000955!4.33e-28!50;UBERON:0006238!4.33e-28!50;UBERON:0002616!1.87e-27!49;UBERON:0000033!1.65e-26!63;UBERON:0002020!8.53e-23!34;UBERON:0003080!2.66e-22!40;UBERON:0003056!3.55e-22!49;UBERON:0002780!1.30e-21!39;UBERON:0001890!1.30e-21!39;UBERON:0006240!1.30e-21!39;UBERON:0002791!3.96e-20!29;UBERON:0003528!3.96e-20!29;UBERON:0001893!3.96e-20!29;UBERON:0000956!2.97e-14!21;UBERON:0001869!2.97e-14!21;UBERON:0000203!2.97e-14!21;UBERON:0007811!1.75e-13!86;UBERON:0000153!1.91e-13!94;UBERON:0002619!2.33e-11!17;UBERON:0002021!1.61e-09!10;UBERON:0000411!1.61e-09!10;UBERON:0001950!1.61e-09!10;UBERON:0000025!7.58e-08!114;UBERON:0004111!2.64e-07!122;UBERON:0002420!4.58e-07!8;UBERON:0007245!4.58e-07!8;UBERON:0010009!4.58e-07!8;UBERON:0010011!4.58e-07!8;UBERON:0000454!4.58e-07!8;UBERON:0003076!7.14e-07!12;UBERON:0003057!7.14e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.08e-46,54;UBERON:0001049,1.21e-42,52;UBERON:0005068,1.21e-42,52;UBERON:0006241,1.21e-42,52;UBERON:0007135,1.21e-42,52;UBERON:0002020,3.70e-40,34;UBERON:0003528,1.25e-38,29;UBERON:0002791,1.25e-38,29;UBERON:0001893,1.25e-38,29;UBERON:0001017,1.45e-38,73;UBERON:0002616,2.02e-38,46;UBERON:0000955,1.98e-37,47;UBERON:0006238,1.98e-37,47;UBERON:0001016,2.73e-37,75;UBERON:0003080,7.07e-34,40;UBERON:0002346,5.20e-33,64;UBERON:0003075,5.20e-33,64;UBERON:0007284,5.20e-33,64;UBERON:0002780,2.18e-32,39;UBERON:0001890,2.18e-32,39;UBERON:0006240,2.18e-32,39;UBERON:0010371,7.29e-28,73;UBERON:0000956,1.04e-27,21;UBERON:0001869,1.04e-27,21;UBERON:0000203,1.04e-27,21;UBERON:0004121,1.80e-27,95;UBERON:0000924,1.80e-27,95;UBERON:0006601,1.80e-27,95;UBERON:0003056,2.64e-26,49;UBERON:0002619,5.17e-21,17;UBERON:0010314,2.63e-20,92;UBERON:0002021,2.89e-20,10;UBERON:0000411,2.89e-20,10;UBERON:0001950,2.89e-20,10;UBERON:0000025,8.88e-16,114;UBERON:0004111,3.65e-14,122;UBERON:0002420,1.16e-11,8;UBERON:0007245,1.16e-11,8;UBERON:0010009,1.16e-11,8;UBERON:0010011,1.16e-11,8;UBERON:0000454,1.16e-11,8;UBERON:0003076,9.39e-09,12;UBERON:0003057,9.39e-09,12;UBERON:0011216,1.28e-08,194;UBERON:0002950,2.48e-08,4;UBERON:0001891,2.48e-08,4;UBERON:0009616,2.48e-08,4;UBERON:0010286,2.48e-08,4;UBERON:0000483,2.53e-07,174;UBERON:0000119,3.83e-07,176;UBERON:0002038,6.50e-07,3;UBERON:0009663,6.50e-07,3;UBERON:0009661,6.50e-07,3;UBERON:0000125,6.50e-07,3;UBERON:0002308,6.50e-07,3;UBERON:0004684,8.16e-07,3;UBERON:0002275,8.16e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.912392380975631,1.46837401729345,0.782391344348039,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0,0,3.03474691289397,4.7609188134483,0.633831403506179,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,0.384218305321555,1.55534418462716,2.16009501330705,2.3135745748652,0.285650984403804,1.54607978666129,1.22490799214954,2.01275489138296,1.83843757322004,2.20231761998777,4.34136949489638,3.07213066512487,2.1101806036831,1.82975287204819,2.08365348222704,6.42120897703176,3.37657566019008,1.83357897332172,1.47314292736834,1.28134512719193,0.931997229126503,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.421333260395256,0.511290967734173,0.519572009205738,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,1.46390398505774,3.35114730901528,0,0,0,0,1.64769703345305,10.0650132620098,0.753926112677186,5.04090528557602,4.60287823194595,2.90903262383384,6.32740925964255,0,0,0,0,0.390361328888111,0.229902104433473,0.360124259610698,0.30140963567143,0.0680364991513279,0,0.187403449119458,0.517406741478031,0.862271971731369,0,1.05570674498369,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.52347938276953,0.92614151141356,0.330418782983798,0,0.426576501070468,0,0,0,0,0,0,0,0.502670417600539,0,0.19496408711912,0,0,0,0,0.342745537829186,1.1270773567308,0.203651327845314,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.234690248288502,0,0,0,0.315270288212382,0,0,0,0.345369963731791,0.144649058581512,0,0,0,0,2.56880943980467,2.46144541843627,0.327869890753351,0,0.315508219416257,0.390438744296638,0.215423397732799,0,0.445597348164788,0,0.404810701674894,0,0.395287777946524,0.963963949265421,0,0.35613120733451,0.162886959353576,0,0,0.485561272309963,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0.18006109403131,0.388076051348264,0.857348140126369,0,0.713475270408282,0.329098041204242,0.304464949114599,0,0,0.661585194164886,0.16488625294148,0.161464426695906,0,0,0,0.291480836629851,3.33765543618917,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0.138199973804424,0.954670618015114,0.316335993581135,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,2.25900737046827,3.68260189205742,2.29158205375759,3.60891682921744,5.48066015816514,4.5323633843382,4.05013500139084,3.60256962579376,6.79713613476307,4.65984280576638,0,0,0.682934423016537,0,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0.256100609619477,0.287177344778066,0,0.115884325944855,0,0,0.294397840268795,0,0.532427418478012,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0,0.561142271657738,0.355905054372522,0.197008964751127,1.63692417267876,0.309873682371932,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p6@Nsg1 | |||
}} |
Revision as of 09:41, 4 August 2015
Short description: | p6@Nsg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Nsg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -257bp_to_ENSMUST00000031009, NM_010942, uc008xga.1_5end |
EntrezGene: | 18196 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.09e-28 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-28 | 23 |
neuron | 1.93e-18 | 33 |
neuronal stem cell | 1.93e-18 | 33 |
neuroblast | 1.93e-18 | 33 |
electrically signaling cell | 1.93e-18 | 33 |
electrically responsive cell | 1.79e-16 | 39 |
electrically active cell | 1.79e-16 | 39 |
neural cell | 5.46e-13 | 43 |
ectodermal cell | 1.39e-12 | 44 |
neurectodermal cell | 1.39e-12 | 44 |
neuron of cerebral cortex | 1.92e-10 | 6 |
embryonic cell | 5.79e-07 | 70 |
neuron of the substantia nigra | 6.50e-07 | 3 |
raphe nuclei neuron | 8.16e-07 | 3 |