FFCP PHASE1:Mm9::chr1:155512620..155512634,+: Difference between revisions
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{{FFCP|EntrezGene=67792|HGNC=|MCL_coexpression_id=30|UniProt=D3YYE5|association_with_transcript=-88bp_to_ENSMUST00000147700_5end|description=CAGE_peak_4_at_Rgs8_5end|id=chr1:155512620..155512634,+|ontology_enrichment_celltype=CL:0000117!8.46e-20!23;CL:0000337!8.46e-20!23;CL:0000540!4.86e-13!33;CL:0000047!4.86e-13!33;CL:0000031!4.86e-13!33;CL:0000404!4.86e-13!33;CL:0002319!1.20e-10!43;CL:0000221!3.04e-10!44;CL:0000133!3.04e-10!44;CL:0000393!5.28e-10!39;CL:0000211!5.28e-10!39;CL:0000055!3.49e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.10e-16,23;CL:0000337,1.10e-16,23;CL:0000540,6.59e-11,33;CL:0000047,6.59e-11,33;CL:0000031,6.59e-11,33;CL:0000404,6.59e-11,33;CL:0002610,6.96e-10,3;CL:0002614,9.82e-10,3;CL:0002613,2.22e-09,3;CL:0002319,3.03e-09,43;CL:0000221,5.62e-09,44;CL:0000133,5.62e-09,44;CL:0000393,7.20e-09,39;CL:0000211,7.20e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.48e-29!63;UBERON:0002346!1.86e-27!71;UBERON:0003075!1.86e-27!71;UBERON:0007284!1.86e-27!71;UBERON:0004121!1.71e-24!102;UBERON:0000924!1.71e-24!102;UBERON:0006601!1.71e-24!102;UBERON:0003056!4.93e-24!49;UBERON:0001049!2.12e-23!52;UBERON:0005068!2.12e-23!52;UBERON:0006241!2.12e-23!52;UBERON:0007135!2.12e-23!52;UBERON:0002616!3.68e-23!49;UBERON:0001017!1.81e-22!73;UBERON:0005743!1.81e-22!73;UBERON:0000955!1.82e-22!50;UBERON:0006238!1.82e-22!50;UBERON:0000073!1.68e-21!75;UBERON:0001016!1.68e-21!75;UBERON:0007811!2.13e-18!86;UBERON:0000153!1.00e-17!94;UBERON:0003080!2.66e-15!40;UBERON:0002780!3.07e-14!39;UBERON:0001890!3.07e-14!39;UBERON:0006240!3.07e-14!39;UBERON:0002020!1.74e-11!34;UBERON:0002420!8.69e-11!8;UBERON:0007245!8.69e-11!8;UBERON:0010009!8.69e-11!8;UBERON:0010011!8.69e-11!8;UBERON:0000454!8.69e-11!8;UBERON:0000970!9.67e-11!9;UBERON:0000019!9.67e-11!9;UBERON:0000047!9.67e-11!9;UBERON:0004088!9.67e-11!9;UBERON:0002104!9.67e-11!9;UBERON:0001456!9.67e-11!9;UBERON:0003072!9.67e-11!9;UBERON:0003071!9.67e-11!9;UBERON:0004128!9.67e-11!9;UBERON:0002791!2.54e-09!29;UBERON:0003528!2.54e-09!29;UBERON:0001893!2.54e-09!29;UBERON:0003076!4.63e-09!12;UBERON:0003057!4.63e-09!12;UBERON:0002298!1.52e-08!6;UBERON:0005085!1.54e-08!13;UBERON:0001444!2.37e-08!11;UBERON:0000020!1.83e-07!12;UBERON:0001032!1.83e-07!12;UBERON:0004456!1.83e-07!12;UBERON:0000369!2.63e-07!5;UBERON:0002435!2.63e-07!5;UBERON:0000204!2.63e-07!5;UBERON:0010082!2.63e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.23e-24,95;UBERON:0000924,7.23e-24,95;UBERON:0006601,7.23e-24,95;UBERON:0002420,3.82e-23,8;UBERON:0007245,3.82e-23,8;UBERON:0010009,3.82e-23,8;UBERON:0010011,3.82e-23,8;UBERON:0000454,3.82e-23,8;UBERON:0002346,1.89e-22,64;UBERON:0003075,1.89e-22,64;UBERON:0007284,1.89e-22,64;UBERON:0010371,4.53e-21,73;UBERON:0000073,1.23e-20,54;UBERON:0001017,1.60e-19,73;UBERON:0001016,7.11e-19,75;UBERON:0002616,1.14e-17,46;UBERON:0000955,3.26e-17,47;UBERON:0006238,3.26e-17,47;UBERON:0001049,3.99e-17,52;UBERON:0005068,3.99e-17,52;UBERON:0006241,3.99e-17,52;UBERON:0007135,3.99e-17,52;UBERON:0003056,4.73e-16,49;UBERON:0000369,5.28e-15,5;UBERON:0002435,5.28e-15,5;UBERON:0000204,5.28e-15,5;UBERON:0010082,5.28e-15,5;UBERON:0010314,3.72e-14,92;UBERON:0002950,9.00e-13,4;UBERON:0001891,9.00e-13,4;UBERON:0009616,9.00e-13,4;UBERON:0010286,9.00e-13,4;UBERON:0004733,9.33e-13,6;UBERON:0004732,9.33e-13,6;UBERON:0002028,9.33e-13,6;UBERON:0007277,9.33e-13,6;UBERON:0003080,3.78e-10,40;UBERON:0004684,6.96e-10,3;UBERON:0002275,6.96e-10,3;UBERON:0002038,9.82e-10,3;UBERON:0009663,9.82e-10,3;UBERON:0009661,9.82e-10,3;UBERON:0000125,9.82e-10,3;UBERON:0002308,9.82e-10,3;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0003076,1.17e-08,12;UBERON:0003057,1.17e-08,12;UBERON:0000970,5.97e-08,9;UBERON:0000019,5.97e-08,9;UBERON:0000047,5.97e-08,9;UBERON:0010312,5.97e-08,9;UBERON:0004088,5.97e-08,9;UBERON:0002104,5.97e-08,9;UBERON:0001456,5.97e-08,9;UBERON:0003072,5.97e-08,9;UBERON:0004128,5.97e-08,9;UBERON:0003071,5.97e-08,9;UBERON:0002037,8.81e-08,4;UBERON:0002680,8.81e-08,4;UBERON:0001895,8.81e-08,4;UBERON:0010092,8.81e-08,4;UBERON:0006215,8.81e-08,4;UBERON:0005085,1.13e-07,13;UBERON:0003528,7.35e-07,29;UBERON:0002791,7.35e-07,29;UBERON:0001893,7.35e-07,29;UBERON:0001896,9.50e-07,2;UBERON:0002298,9.50e-07,2;UBERON:0005290,9.50e-07,2;UBERON:0010096,9.50e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,0.439372365468944,0,0,0,0,0,0,0,0,0,3.03474691289397,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.210324961351382,0.285650984403804,0.220868540951614,1.10241719293459,0.575072826109418,0,2.20231761998777,1.91531007127782,1.53606533256243,1.18697658957174,1.55528994124096,2.08365348222704,1.3959149950069,2.25105044012672,1.68078072554491,0,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,23.7152445579353,21.154117388159,0,0,0,0,2.84602214869163,2.28750301409313,1.63350657746724,0.347648640384553,0.767146371990992,2.70124457927428,1.46017136760982,0,0,0,0.420883711772948,1.30120442962704,2.29902104433473,1.26043490863744,0.90422890701429,1.42876648217788,1.66547836370305,0.843315521037559,0.517406741478031,0.431135985865684,0.378212160335639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93155722413313,1.60550589987792,1.40654023910644,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0.18006109403131,0,0.214337035031592,0.354680467284547,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.415149390336707,0.399024873401031,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.128050304809739,0.17230640686684,0,0.231768651889711,0.38581844092741,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p4@Rgs8}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:67792 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YYE5 | |||
|association_with_transcript=-88bp_to_ENSMUST00000147700_5end | |||
|cluster_id=chr1:155512620..155512634,+ | |||
|description=CAGE_peak_4_at_Rgs8_5end | |||
|id=chr1:155512620..155512634,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.46e-20!23;CL:0000337!8.46e-20!23;CL:0000540!4.86e-13!33;CL:0000047!4.86e-13!33;CL:0000031!4.86e-13!33;CL:0000404!4.86e-13!33;CL:0002319!1.20e-10!43;CL:0000221!3.04e-10!44;CL:0000133!3.04e-10!44;CL:0000393!5.28e-10!39;CL:0000211!5.28e-10!39;CL:0000055!3.49e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.10e-16,23;CL:0000337,1.10e-16,23;CL:0000540,6.59e-11,33;CL:0000047,6.59e-11,33;CL:0000031,6.59e-11,33;CL:0000404,6.59e-11,33;CL:0002610,6.96e-10,3;CL:0002614,9.82e-10,3;CL:0002613,2.22e-09,3;CL:0002319,3.03e-09,43;CL:0000221,5.62e-09,44;CL:0000133,5.62e-09,44;CL:0000393,7.20e-09,39;CL:0000211,7.20e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.48e-29!63;UBERON:0002346!1.86e-27!71;UBERON:0003075!1.86e-27!71;UBERON:0007284!1.86e-27!71;UBERON:0004121!1.71e-24!102;UBERON:0000924!1.71e-24!102;UBERON:0006601!1.71e-24!102;UBERON:0003056!4.93e-24!49;UBERON:0001049!2.12e-23!52;UBERON:0005068!2.12e-23!52;UBERON:0006241!2.12e-23!52;UBERON:0007135!2.12e-23!52;UBERON:0002616!3.68e-23!49;UBERON:0001017!1.81e-22!73;UBERON:0005743!1.81e-22!73;UBERON:0000955!1.82e-22!50;UBERON:0006238!1.82e-22!50;UBERON:0000073!1.68e-21!75;UBERON:0001016!1.68e-21!75;UBERON:0007811!2.13e-18!86;UBERON:0000153!1.00e-17!94;UBERON:0003080!2.66e-15!40;UBERON:0002780!3.07e-14!39;UBERON:0001890!3.07e-14!39;UBERON:0006240!3.07e-14!39;UBERON:0002020!1.74e-11!34;UBERON:0002420!8.69e-11!8;UBERON:0007245!8.69e-11!8;UBERON:0010009!8.69e-11!8;UBERON:0010011!8.69e-11!8;UBERON:0000454!8.69e-11!8;UBERON:0000970!9.67e-11!9;UBERON:0000019!9.67e-11!9;UBERON:0000047!9.67e-11!9;UBERON:0004088!9.67e-11!9;UBERON:0002104!9.67e-11!9;UBERON:0001456!9.67e-11!9;UBERON:0003072!9.67e-11!9;UBERON:0003071!9.67e-11!9;UBERON:0004128!9.67e-11!9;UBERON:0002791!2.54e-09!29;UBERON:0003528!2.54e-09!29;UBERON:0001893!2.54e-09!29;UBERON:0003076!4.63e-09!12;UBERON:0003057!4.63e-09!12;UBERON:0002298!1.52e-08!6;UBERON:0005085!1.54e-08!13;UBERON:0001444!2.37e-08!11;UBERON:0000020!1.83e-07!12;UBERON:0001032!1.83e-07!12;UBERON:0004456!1.83e-07!12;UBERON:0000369!2.63e-07!5;UBERON:0002435!2.63e-07!5;UBERON:0000204!2.63e-07!5;UBERON:0010082!2.63e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.23e-24,95;UBERON:0000924,7.23e-24,95;UBERON:0006601,7.23e-24,95;UBERON:0002420,3.82e-23,8;UBERON:0007245,3.82e-23,8;UBERON:0010009,3.82e-23,8;UBERON:0010011,3.82e-23,8;UBERON:0000454,3.82e-23,8;UBERON:0002346,1.89e-22,64;UBERON:0003075,1.89e-22,64;UBERON:0007284,1.89e-22,64;UBERON:0010371,4.53e-21,73;UBERON:0000073,1.23e-20,54;UBERON:0001017,1.60e-19,73;UBERON:0001016,7.11e-19,75;UBERON:0002616,1.14e-17,46;UBERON:0000955,3.26e-17,47;UBERON:0006238,3.26e-17,47;UBERON:0001049,3.99e-17,52;UBERON:0005068,3.99e-17,52;UBERON:0006241,3.99e-17,52;UBERON:0007135,3.99e-17,52;UBERON:0003056,4.73e-16,49;UBERON:0000369,5.28e-15,5;UBERON:0002435,5.28e-15,5;UBERON:0000204,5.28e-15,5;UBERON:0010082,5.28e-15,5;UBERON:0010314,3.72e-14,92;UBERON:0002950,9.00e-13,4;UBERON:0001891,9.00e-13,4;UBERON:0009616,9.00e-13,4;UBERON:0010286,9.00e-13,4;UBERON:0004733,9.33e-13,6;UBERON:0004732,9.33e-13,6;UBERON:0002028,9.33e-13,6;UBERON:0007277,9.33e-13,6;UBERON:0003080,3.78e-10,40;UBERON:0004684,6.96e-10,3;UBERON:0002275,6.96e-10,3;UBERON:0002038,9.82e-10,3;UBERON:0009663,9.82e-10,3;UBERON:0009661,9.82e-10,3;UBERON:0000125,9.82e-10,3;UBERON:0002308,9.82e-10,3;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0003076,1.17e-08,12;UBERON:0003057,1.17e-08,12;UBERON:0000970,5.97e-08,9;UBERON:0000019,5.97e-08,9;UBERON:0000047,5.97e-08,9;UBERON:0010312,5.97e-08,9;UBERON:0004088,5.97e-08,9;UBERON:0002104,5.97e-08,9;UBERON:0001456,5.97e-08,9;UBERON:0003072,5.97e-08,9;UBERON:0004128,5.97e-08,9;UBERON:0003071,5.97e-08,9;UBERON:0002037,8.81e-08,4;UBERON:0002680,8.81e-08,4;UBERON:0001895,8.81e-08,4;UBERON:0010092,8.81e-08,4;UBERON:0006215,8.81e-08,4;UBERON:0005085,1.13e-07,13;UBERON:0003528,7.35e-07,29;UBERON:0002791,7.35e-07,29;UBERON:0001893,7.35e-07,29;UBERON:0001896,9.50e-07,2;UBERON:0002298,9.50e-07,2;UBERON:0005290,9.50e-07,2;UBERON:0010096,9.50e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,0.439372365468944,0,0,0,0,0,0,0,0,0,3.03474691289397,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0.210324961351382,0.285650984403804,0.220868540951614,1.10241719293459,0.575072826109418,0,2.20231761998777,1.91531007127782,1.53606533256243,1.18697658957174,1.55528994124096,2.08365348222704,1.3959149950069,2.25105044012672,1.68078072554491,0,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,23.7152445579353,21.154117388159,0,0,0,0,2.84602214869163,2.28750301409313,1.63350657746724,0.347648640384553,0.767146371990992,2.70124457927428,1.46017136760982,0,0,0,0.420883711772948,1.30120442962704,2.29902104433473,1.26043490863744,0.90422890701429,1.42876648217788,1.66547836370305,0.843315521037559,0.517406741478031,0.431135985865684,0.378212160335639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93155722413313,1.60550589987792,1.40654023910644,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0.18006109403131,0,0.214337035031592,0.354680467284547,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.415149390336707,0.399024873401031,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.128050304809739,0.17230640686684,0,0.231768651889711,0.38581844092741,0,0,0,0,0,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p4@Rgs8 | |||
}} |
Revision as of 00:45, 5 August 2015
Short description: | p4@Rgs8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rgs8_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | -88bp_to_ENSMUST00000147700_5end |
EntrezGene: | 67792 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.10e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.10e-16 | 23 |
neuron | 6.59e-11 | 33 |
neuronal stem cell | 6.59e-11 | 33 |
neuroblast | 6.59e-11 | 33 |
electrically signaling cell | 6.59e-11 | 33 |
raphe nuclei neuron | 6.96e-10 | 3 |
neuron of the substantia nigra | 9.82e-10 | 3 |
striatum neuron | 2.22e-09 | 3 |
neural cell | 3.03e-09 | 43 |
ectodermal cell | 5.62e-09 | 44 |
neurectodermal cell | 5.62e-09 | 44 |
electrically responsive cell | 7.20e-09 | 39 |
electrically active cell | 7.20e-09 | 39 |