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Coexpression cluster:C286

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Full id: C286_cerebellum_occipital_optic_parietal_globus_caudate_medial



Phase1 CAGE Peaks

Hg19::chr12:2944396..2944456,-p2@NRIP2
Hg19::chr15:31770272..31770297,-p1@LOC283713
Hg19::chr15:41576157..41576168,+p1@ENST00000558457
p1@ENST00000558945
Hg19::chr15:68871151..68871206,+p4@CORO2B
Hg19::chr15:83349215..83349224,-p6@AP3B2
Hg19::chr17:77086942..77086969,-p@chr17:77086942..77086969
-
Hg19::chr19:35630530..35630544,+p8@FXYD1
Hg19::chr19:6496061..6496072,-p@chr19:6496061..6496072
-
Hg19::chr2:39944930..39944941,+p@chr2:39944930..39944941
+
Hg19::chr7:127807707..127807735,+p@chr7:127807707..127807735
+
Hg19::chr7:78995180..78995184,-p@chr7:78995180..78995184
-
Hg19::chrX:139865330..139865375,+p3@AK054921
Hg19::chrX:139865378..139865502,+p2@AK054921
Hg19::chrX:139865504..139865511,+p9@AK054921
Hg19::chrX:139865512..139865534,+p5@AK054921
Hg19::chrX:139865537..139865548,+p8@AK054921
Hg19::chrX:139865549..139865571,+p4@AK054921
Hg19::chrX:139865584..139865721,+p1@AK054921
Hg19::chrX:139865729..139865742,+p7@AK054921
Hg19::chrX:139865777..139865788,+p10@AK054921
Hg19::chrX:139865816..139865840,+p6@AK054921
Hg19::chrX:139865845..139865894,+p@chrX:139865845..139865894
+
Hg19::chrX:139865901..139865949,+p@chrX:139865901..139865949
+
Hg19::chrX:139865951..139865954,+p@chrX:139865951..139865954
+
Hg19::chrX:139865977..139866003,+p@chrX:139865977..139866003
+
Hg19::chrX:139866014..139866036,+p@chrX:139866014..139866036
+
Hg19::chrX:139866041..139866089,+p@chrX:139866041..139866089
+
Hg19::chrX:139866092..139866140,+p@chrX:139866092..139866140
+
Hg19::chrX:139866145..139866181,+p@chrX:139866145..139866181
+
Hg19::chrX:139866182..139866193,+p@chrX:139866182..139866193
+
Hg19::chrX:139866201..139866208,+p@chrX:139866201..139866208
+
Hg19::chrX:139866235..139866251,+p@chrX:139866235..139866251
+
Hg19::chrX:139866285..139866318,+p@chrX:139866285..139866318
+
Hg19::chrX:139866325..139866336,+p@chrX:139866325..139866336
+
Hg19::chrX:139866361..139866428,+p@chrX:139866361..139866428
+
Hg19::chrX:139866444..139866469,+p@chrX:139866444..139866469
+
Hg19::chrX:139866474..139866484,+p@chrX:139866474..139866484
+
Hg19::chrX:139866489..139866516,+p@chrX:139866489..139866516
+
Hg19::chrX:139866541..139866552,+p@chrX:139866541..139866552
+
Hg19::chrX:139866560..139866578,+p@chrX:139866560..139866578
+
Hg19::chrX:139866580..139866589,+p@chrX:139866580..139866589
+
Hg19::chrX:139866595..139866724,+p@chrX:139866595..139866724
+
Hg19::chrX:139866734..139866760,+p@chrX:139866734..139866760
+
Hg19::chrX:139866762..139866765,+p@chrX:139866762..139866765
+
Hg19::chrX:139866776..139866793,+p@chrX:139866776..139866793
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
non-terminally differentiated cell3.36e-14180
fat cell3.63e-0815
electrically responsive cell1.56e-0760
electrically active cell1.56e-0760
muscle precursor cell1.83e-0757
myoblast1.83e-0757
multi-potent skeletal muscle stem cell1.83e-0757
muscle cell8.80e-0754
Uber Anatomy
Ontology termp-valuen
adult organism8.52e-33115
neural tube1.33e-2957
neural rod1.33e-2957
future spinal cord1.33e-2957
neural keel1.33e-2957
central nervous system4.40e-2982
regional part of nervous system5.39e-2994
nervous system5.39e-2994
regional part of brain7.61e-2859
neurectoderm2.28e-2690
neural plate1.25e-2586
presumptive neural plate1.25e-2586
brain2.01e-2569
future brain2.01e-2569
anterior neural tube2.99e-2342
regional part of forebrain9.64e-2341
forebrain9.64e-2341
future forebrain9.64e-2341
ectoderm5.89e-21173
presumptive ectoderm5.89e-21173
organism subdivision1.83e-20365
ectoderm-derived structure3.80e-20169
gray matter6.36e-2034
brain grey matter6.36e-2034
telencephalon8.13e-2034
anterior region of body1.12e-19129
craniocervical region1.12e-19129
regional part of telencephalon3.09e-1933
head5.65e-19123
cerebral hemisphere1.38e-1832
pre-chordal neural plate1.94e-1861
regional part of cerebral cortex3.30e-1522
multi-tissue structure1.39e-14347
cerebral cortex2.93e-1425
pallium2.93e-1425
neocortex5.51e-1420
tube7.71e-13194
epithelium1.25e-12309
cell layer1.29e-12312
anatomical cluster3.38e-12286
anatomical conduit1.19e-11241
somite1.87e-0983
paraxial mesoderm1.87e-0983
presomitic mesoderm1.87e-0983
presumptive segmental plate1.87e-0983
trunk paraxial mesoderm1.87e-0983
presumptive paraxial mesoderm1.87e-0983
dermomyotome5.22e-0970
muscle tissue6.58e-0963
musculature6.58e-0963
musculature of body6.58e-0963
skeletal muscle tissue1.11e-0861
striated muscle tissue1.11e-0861
myotome1.11e-0861
multi-cellular organism4.19e-08659
posterior neural tube1.56e-0715
chordal neural plate1.56e-0715
nucleus of brain3.47e-079
neural nucleus3.47e-079
basal ganglion4.66e-079
nuclear complex of neuraxis4.66e-079
aggregate regional part of brain4.66e-079
collection of basal ganglia4.66e-079
cerebral subcortex4.66e-079


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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