Personal tools

Coexpression cluster:C82

From FANTOM5_SSTAR

Jump to: navigation, search


Full id: C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34



Phase1 CAGE Peaks

  Short description
Hg19::chr10:104533977..104533990,+ +
p@chr10:104533977..104533990
Hg19::chr10:104545681..104545697,- p@chr10:104545681..104545697
-
Hg19::chr10:104545870..104545915,+ p@chr10:104545870..104545915
+
Hg19::chr10:126369470..126369475,+ p@chr10:126369470..126369475
+
Hg19::chr10:129681159..129681175,- p@chr10:129681159..129681175
-
Hg19::chr10:17066097..17066134,+ p@chr10:17066097..17066134
+
Hg19::chr10:17067634..17067645,- p@chr10:17067634..17067645
-
Hg19::chr10:17067824..17067836,+ p@chr10:17067824..17067836
+
Hg19::chr10:17067890..17067913,+ p@chr10:17067890..17067913
+
Hg19::chr10:17069000..17069014,+ p@chr10:17069000..17069014
+
Hg19::chr10:17242471..17242477,- p@chr10:17242471..17242477
-
Hg19::chr10:17242512..17242523,- p9@TRDMT1
Hg19::chr10:17242530..17242542,- p4@TRDMT1
Hg19::chr10:17242613..17242631,+ p@chr10:17242613..17242631
+
Hg19::chr10:17243340..17243355,- p3@TRDMT1
Hg19::chr10:17243357..17243399,- p2@TRDMT1
Hg19::chr10:17243514..17243535,+ p@chr10:17243514..17243535
+
Hg19::chr10:20293370..20293386,+ p@chr10:20293370..20293386
+
Hg19::chr10:3847396..3847414,- p@chr10:3847396..3847414
-
Hg19::chr10:3847416..3847430,- p@chr10:3847416..3847430
-
Hg19::chr10:3916000..3916035,- p@chr10:3916000..3916035
-
Hg19::chr10:48482237..48482242,- p@chr10:48482237..48482242
-
Hg19::chr10:48482432..48482435,+ p@chr10:48482432..48482435
+
Hg19::chr10:60144114..60144139,+ p@chr10:60144114..60144139
+
Hg19::chr10:64380497..64380512,- p@chr10:64380497..64380512
-
Hg19::chr10:64392525..64392540,+ p@chr10:64392525..64392540
+
Hg19::chr10:65029140..65029162,+ p@chr10:65029140..65029162
+
Hg19::chr11:129920426..129920430,+ p@chr11:129920426..129920430
+
Hg19::chr11:35104964..35104990,- p@chr11:35104964..35104990
-
Hg19::chr11:35104993..35104996,- p@chr11:35104993..35104996
-
Hg19::chr11:35105636..35105686,+ p@chr11:35105636..35105686
+
Hg19::chr11:60157278..60157288,+ p@chr11:60157278..60157288
+
Hg19::chr11:60930092..60930106,- p@chr11:60930092..60930106
-
Hg19::chr11:61185177..61185189,- p@chr11:61185177..61185189
-
Hg19::chr11:62321001..62321030,- p@chr11:62321001..62321030
-
Hg19::chr11:63335017..63335035,+ p@chr11:63335017..63335035
+
Hg19::chr11:63335039..63335063,+ p@chr11:63335039..63335063
+
Hg19::chr12:109232410..109232427,+ p@chr12:109232410..109232427
+
Hg19::chr12:116893709..116893733,+ p@chr12:116893709..116893733
+
Hg19::chr12:121739938..121739950,+ p@chr12:121739938..121739950
+
Hg19::chr12:13250508..13250515,+ +
p@chr12:13250508..13250515
Hg19::chr12:29317815..29317846,- p@chr12:29317815..29317846
-
Hg19::chr12:29317948..29317994,+ p@chr12:29317948..29317994
+
Hg19::chr12:53267915..53267928,- p@chr12:53267915..53267928
-
Hg19::chr12:53267946..53267974,- p@chr12:53267946..53267974
-
Hg19::chr12:53267977..53268036,- -
p@chr12:53267977..53268036
Hg19::chr12:54807344..54807366,+ p@chr12:54807344..54807366
+
Hg19::chr12:68753216..68753232,+ p@chr12:68753216..68753232
+
Hg19::chr12:68758900..68758911,+ p@chr12:68758900..68758911
+
Hg19::chr12:68758939..68758961,- p@chr12:68758939..68758961
-
Hg19::chr12:68758975..68758989,- p@chr12:68758975..68758989
-
Hg19::chr12:68759286..68759299,+ +
p@chr12:68759286..68759299
Hg19::chr12:68759388..68759416,+ p@chr12:68759388..68759416
+
Hg19::chr12:68761672..68761683,- p@chr12:68761672..68761683
-
Hg19::chr12:68761695..68761731,- p@chr12:68761695..68761731
-
Hg19::chr12:76414859..76414885,+ p@chr12:76414859..76414885
+
Hg19::chr12:89560326..89560337,- p@chr12:89560326..89560337
-
Hg19::chr12:89560342..89560372,- p@chr12:89560342..89560372
-
Hg19::chr12:89847483..89847491,- p@chr12:89847483..89847491
-
Hg19::chr13:42031316..42031325,- p@chr13:42031316..42031325
-
Hg19::chr13:42031350..42031392,- p@chr13:42031350..42031392
-
Hg19::chr13:49227910..49227937,+ p2@CYSLTR2
Hg19::chr13:99973121..99973130,- p@chr13:99973121..99973130
-
Hg19::chr14:105948312..105948345,- p@chr14:105948312..105948345
-
Hg19::chr14:105948473..105948498,+ p@chr14:105948473..105948498
+
Hg19::chr14:105954077..105954084,- p@chr14:105954077..105954084
-
Hg19::chr14:50468469..50468481,+ p@chr14:50468469..50468481
+
Hg19::chr14:52794067..52794110,- -
p@chr14:52794067..52794110
Hg19::chr14:55592226..55592231,- p@chr14:55592226..55592231
-
Hg19::chr14:55770925..55770967,+ p@chr14:55770925..55770967
+
Hg19::chr14:73603644..73603653,- p@chr14:73603644..73603653
-
Hg19::chr14:91830519..91830529,- p@chr14:91830519..91830529
-
Hg19::chr15:39719330..39719335,- p6@ENST00000558209
Hg19::chr15:39719343..39719357,- p1@ENST00000558209
Hg19::chr15:39719744..39719763,+ p@chr15:39719744..39719763
+
Hg19::chr15:50358642..50358649,+ p@chr15:50358642..50358649
+
Hg19::chr15:50358665..50358679,+ p@chr15:50358665..50358679
+
Hg19::chr15:50358693..50358704,+ p@chr15:50358693..50358704
+
Hg19::chr15:50358999..50359010,+ p@chr15:50358999..50359010
+
Hg19::chr15:67383912..67383927,+ p@chr15:67383912..67383927
+
Hg19::chr15:86127558..86127582,+ p@chr15:86127558..86127582
+
Hg19::chr15:90944179..90944225,- p@chr15:90944179..90944225
-
Hg19::chr15:90944315..90944326,+ p@chr15:90944315..90944326
+
Hg19::chr15:90944341..90944373,+ p@chr15:90944341..90944373
+
Hg19::chr16:17474619..17474656,- p@chr16:17474619..17474656
-
Hg19::chr16:29129822..29129845,- -
p@chr16:29129822..29129845
Hg19::chr17:62097580..62097601,+ p@chr17:62097580..62097601
+
Hg19::chr17:7036113..7036124,- p@chr17:7036113..7036124
-
Hg19::chr18:11850875..11850895,- p@chr18:11850875..11850895
-
Hg19::chr18:74820004..74820024,- p@chr18:74820004..74820024
-
Hg19::chr18:74820075..74820091,- p@chr18:74820075..74820091
-
Hg19::chr18:74820100..74820105,+ p@chr18:74820100..74820105
+
Hg19::chr19:41834142..41834168,+ +
p@chr19:41834142..41834168
Hg19::chr19:45240164..45240191,+ p@chr19:45240164..45240191
+
Hg19::chr19:52320046..52320049,- p@chr19:52320046..52320049
-
Hg19::chr19:6057689..6057699,+ p@chr19:6057689..6057699
+
Hg19::chr19:6062331..6062346,- -
p@chr19:6062331..6062346
Hg19::chr19:6062387..6062398,- p@chr19:6062387..6062398
-
Hg19::chr19:6062453..6062457,- p@chr19:6062453..6062457
-
Hg19::chr19:6066092..6066109,+ p@chr19:6066092..6066109
+
Hg19::chr1:109133646..109133666,- p@chr1:109133646..109133666
-
Hg19::chr1:109133864..109133905,+ p@chr1:109133864..109133905
+
Hg19::chr1:109134776..109134796,- p@chr1:109134776..109134796
-
Hg19::chr1:112050102..112050112,- p@chr1:112050102..112050112
-
Hg19::chr1:114473251..114473289,- p@chr1:114473251..114473289
-
Hg19::chr1:12239173..12239198,- p@chr1:12239173..12239198
-
Hg19::chr1:12662045..12662059,- p@chr1:12662045..12662059
-
Hg19::chr1:151913598..151913611,- p@chr1:151913598..151913611
-
Hg19::chr1:151913612..151913631,- p@chr1:151913612..151913631
-
Hg19::chr1:151913957..151913980,- -
p@chr1:151913957..151913980
Hg19::chr1:151914166..151914193,+ p@chr1:151914166..151914193
+
Hg19::chr1:151917005..151917021,- p@chr1:151917005..151917021
-
Hg19::chr1:151917057..151917078,- p@chr1:151917057..151917078
-
Hg19::chr1:151917148..151917162,- p@chr1:151917148..151917162
-
Hg19::chr1:151917355..151917371,+ p@chr1:151917355..151917371
+
Hg19::chr1:151918240..151918247,- p@chr1:151918240..151918247
-
Hg19::chr1:151918249..151918277,- p@chr1:151918249..151918277
-
Hg19::chr1:151918280..151918290,- p@chr1:151918280..151918290
-
Hg19::chr1:151918485..151918503,+ p@chr1:151918485..151918503
+
Hg19::chr1:15545407..15545411,+ p@chr1:15545407..15545411
+
Hg19::chr1:221862665..221862679,- p@chr1:221862665..221862679
-
Hg19::chr1:28189986..28189990,+ +
p@chr1:28189986..28189990
Hg19::chr1:38465437..38465459,+ p@chr1:38465437..38465459
+
Hg19::chr1:92179103..92179141,- p@chr1:92179103..92179141
-
Hg19::chr20:56008066..56008071,- p@chr20:56008066..56008071
-
Hg19::chr21:36238528..36238531,+ p@chr21:36238528..36238531
+
Hg19::chr22:37281783..37281788,+ p@chr22:37281783..37281788
+
Hg19::chr22:43326895..43326930,- p@chr22:43326895..43326930
-
Hg19::chr22:43329570..43329602,- p@chr22:43329570..43329602
-
Hg19::chr22:43329610..43329637,- p@chr22:43329610..43329637
-
Hg19::chr22:43330001..43330012,+ p@chr22:43330001..43330012
+
Hg19::chr22:43330043..43330062,+ p@chr22:43330043..43330062
+
Hg19::chr22:44464355..44464369,- p@chr22:44464355..44464369
-
Hg19::chr22:44999934..44999939,+ p@chr22:44999934..44999939
+
Hg19::chr2:216614453..216614472,- p@chr2:216614453..216614472
-
Hg19::chr2:216614478..216614489,- p@chr2:216614478..216614489
-
Hg19::chr2:216614538..216614551,- -
p@chr2:216614538..216614551
Hg19::chr2:235217365..235217381,- p@chr2:235217365..235217381
-
Hg19::chr2:235217451..235217465,- p@chr2:235217451..235217465
-
Hg19::chr2:235334858..235334870,- p@chr2:235334858..235334870
-
Hg19::chr2:240387639..240387653,+ p@chr2:240387639..240387653
+
Hg19::chr2:40709772..40709789,- p@chr2:40709772..40709789
-
Hg19::chr2:47212524..47212567,+ p@chr2:47212524..47212567
+
Hg19::chr2:47284758..47284782,- p@chr2:47284758..47284782
-
Hg19::chr2:47300229..47300236,+ p@chr2:47300229..47300236
+
Hg19::chr2:47300248..47300284,+ p@chr2:47300248..47300284
+
Hg19::chr2:65090007..65090020,+ p@chr2:65090007..65090020
+
Hg19::chr2:65090091..65090103,+ p@chr2:65090091..65090103
+
Hg19::chr2:99122586..99122606,- p@chr2:99122586..99122606
-
Hg19::chr3:112298821..112298852,+ p@chr3:112298821..112298852
+
Hg19::chr3:151976224..151976237,- p@chr3:151976224..151976237
-
Hg19::chr3:151976260..151976273,- p@chr3:151976260..151976273
-
Hg19::chr3:152939631..152939652,- p@chr3:152939631..152939652
-
Hg19::chr3:15835826..15835840,- p@chr3:15835826..15835840
-
Hg19::chr3:15836007..15836021,+ p@chr3:15836007..15836021
+
Hg19::chr3:15836027..15836046,+ +
p@chr3:15836027..15836046
Hg19::chr3:15837673..15837713,+ p@chr3:15837673..15837713
+
Hg19::chr3:15847222..15847244,- p@chr3:15847222..15847244
-
Hg19::chr3:172468136..172468178,- p@chr3:172468136..172468178
-
Hg19::chr3:190335275..190335290,+ p@chr3:190335275..190335290
+
Hg19::chr3:196370159..196370173,- p@chr3:196370159..196370173
-
Hg19::chr3:45208780..45208803,+ +
p@chr3:45208780..45208803
Hg19::chr4:124538142..124538152,- p@chr4:124538142..124538152
-
Hg19::chr4:124538169..124538193,- p@chr4:124538169..124538193
-
Hg19::chr4:124538200..124538219,- p@chr4:124538200..124538219
-
Hg19::chr4:2414806..2414827,- p@chr4:2414806..2414827
-
Hg19::chr4:26076498..26076513,+ p@chr4:26076498..26076513
+
Hg19::chr4:26219782..26219791,- p@chr4:26219782..26219791
-
Hg19::chr4:3374759..3374771,- p@chr4:3374759..3374771
-
Hg19::chr4:40056412..40056426,+ p@chr4:40056412..40056426
+
Hg19::chr4:40057419..40057431,+ p@chr4:40057419..40057431
+
Hg19::chr5:106725704..106725717,+ p@chr5:106725704..106725717
+
Hg19::chr5:106725733..106725744,+ p@chr5:106725733..106725744
+
Hg19::chr5:106725747..106725757,+ +
p@chr5:106725747..106725757
Hg19::chr5:140984131..140984145,+ p@chr5:140984131..140984145
+
Hg19::chr5:140984152..140984163,+ p@chr5:140984152..140984163
+
Hg19::chr5:140984173..140984197,+ +
p@chr5:140984173..140984197
Hg19::chr5:146862466..146862485,- p@chr5:146862466..146862485
-
Hg19::chr5:40391958..40391988,+ +
p@chr5:40391958..40391988
Hg19::chr5:59055872..59055891,- p@chr5:59055872..59055891
-
Hg19::chr6:11318639..11318673,- p@chr6:11318639..11318673
-
Hg19::chr6:121655787..121655813,+ p@chr6:121655787..121655813
+
Hg19::chr6:13396406..13396432,+ p@chr6:13396406..13396432
+
Hg19::chr6:136904512..136904532,+ +
p@chr6:136904512..136904532
Hg19::chr6:138145416..138145431,- p@chr6:138145416..138145431
-
Hg19::chr6:14721357..14721365,- p@chr6:14721357..14721365
-
Hg19::chr6:158452675..158452686,+ p@chr6:158452675..158452686
+
Hg19::chr6:159271714..159271721,+ p@chr6:159271714..159271721
+
Hg19::chr6:160403136..160403162,+ p@chr6:160403136..160403162
+
Hg19::chr6:160403199..160403212,+ p@chr6:160403199..160403212
+
Hg19::chr6:161790443..161790451,- -
p@chr6:161790443..161790451
Hg19::chr6:167504549..167504554,- p@chr6:167504549..167504554
-
Hg19::chr6:167508510..167508523,- -
p@chr6:167508510..167508523
Hg19::chr6:20326681..20326699,+ p@chr6:20326681..20326699
+
Hg19::chr6:25007534..25007546,- p@chr6:25007534..25007546
-
Hg19::chr6:25007568..25007579,- p@chr6:25007568..25007579
-
Hg19::chr6:33029858..33029902,- p@chr6:33029858..33029902
-
Hg19::chr6:37070154..37070164,- p@chr6:37070154..37070164
-
Hg19::chr7:100780601..100780612,+ p@chr7:100780601..100780612
+
Hg19::chr7:1014746..1014766,- p3@COX19
Hg19::chr7:104597631..104597646,- p@chr7:104597631..104597646
-
Hg19::chr7:104597794..104597837,+ p@chr7:104597794..104597837
+
Hg19::chr7:12726552..12726563,+ p3@ARL4A
Hg19::chr7:158611014..158611026,- p@chr7:158611014..158611026
-
Hg19::chr7:158611500..158611530,+ p@chr7:158611500..158611530
+
Hg19::chr7:17049278..17049326,+ p@chr7:17049278..17049326
+
Hg19::chr7:45020110..45020119,- p@chr7:45020110..45020119
-
Hg19::chr7:73132509..73132513,+ p@chr7:73132509..73132513
+
Hg19::chr7:968509..968538,+ p@chr7:968509..968538
+
Hg19::chr8:102167846..102167856,+ p@chr8:102167846..102167856
+
Hg19::chr8:116507627..116507631,+ p@chr8:116507627..116507631
+
Hg19::chr8:145516231..145516253,- p@chr8:145516231..145516253
-
Hg19::chr8:48504387..48504397,- p@chr8:48504387..48504397
-
Hg19::chr9:110250603..110250614,- p24@KLF4
Hg19::chr9:110252580..110252611,+ p@chr9:110252580..110252611
+
Hg19::chr9:128003959..128003980,+ p2@ENST00000468244
Hg19::chr9:136154265..136154271,- p@chr9:136154265..136154271
-
Hg19::chr9:34986883..34986905,+ +
p@chr9:34986883..34986905
Hg19::chr9:36151946..36151961,- p@chr9:36151946..36151961
-
Hg19::chr9:36152108..36152123,+ p@chr9:36152108..36152123
+
Hg19::chr9:36152132..36152143,+ p@chr9:36152132..36152143
+
Hg19::chr9:73178844..73178863,+ p@chr9:73178844..73178863
+
Hg19::chr9:97418592..97418631,- p@chr9:97418592..97418631
-
Hg19::chrX:106918248..106918263,+ p@chrX:106918248..106918263
+
Hg19::chrX:11359728..11359776,+ p@chrX:11359728..11359776
+
Hg19::chrX:38728212..38728224,- p@chrX:38728212..38728224
-
Hg19::chrX:45626788..45626791,- p@chrX:45626788..45626791
-


Enriched pathways on this co-expression cluster
Summary:


Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset


data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster
Summary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner



link to source dataset


data

GO IDGO nameFDR corrected p-value
GO:0001631cysteinyl leukotriene receptor activity0.0125586231956325
GO:0016428tRNA (cytosine-5-)-methyltransferase activity0.0125586231956325
GO:0016427tRNA (cytosine)-methyltransferase activity0.0125586231956325
GO:0007500mesodermal cell fate determination0.014647414559192
GO:0003886DNA (cytosine-5-)-methyltransferase activity0.014647414559192
GO:0004974leukotriene receptor activity0.014647414559192
GO:0009008DNA-methyltransferase activity0.014647414559192
GO:0001710mesodermal cell fate commitment0.014647414559192
GO:0048333mesodermal cell differentiation0.014647414559192
GO:0008175tRNA methyltransferase activity0.0246124767523266
GO:0001707mesoderm formation0.0246124767523266
GO:0048332mesoderm morphogenesis0.0246124767523266
GO:0001704formation of primary germ layer0.0246124767523266
GO:0006305DNA alkylation0.0287069673487321
GO:0006306DNA methylation0.0287069673487321
GO:0007369gastrulation0.0287069673487321
GO:0008173RNA methyltransferase activity0.0287069673487321
GO:0006304DNA modification0.0287069673487321
GO:0001709cell fate determination0.0287069673487321
GO:0007498mesoderm development0.0402649374668714
GO:0043414biopolymer methylation0.0402649374668714



Enriched sample ontology terms on this co-expression cluster
Summary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji



links to source dataset

cell_data
uberon_data



Cell Type
Ontology termp-valuen
classical monocyte2.00e-12442
CD14-positive, CD16-negative classical monocyte2.00e-12442
defensive cell1.70e-10748
phagocyte1.70e-10748
granulocyte monocyte progenitor cell7.02e-9667
myeloid leukocyte1.41e-9372
macrophage dendritic cell progenitor2.54e-9361
myeloid lineage restricted progenitor cell5.30e-8966
monopoietic cell6.28e-8859
monocyte6.28e-8859
monoblast6.28e-8859
promonocyte6.28e-8859
leukocyte1.31e-78136
hematopoietic lineage restricted progenitor cell1.66e-71120
nongranular leukocyte6.10e-70115
myeloid cell3.44e-64108
common myeloid progenitor3.44e-64108
hematopoietic stem cell1.79e-63168
angioblastic mesenchymal cell1.79e-63168
hematopoietic cell1.37e-59177
hematopoietic oligopotent progenitor cell2.94e-57161
hematopoietic multipotent progenitor cell2.94e-57161
stuff accumulating cell2.25e-5487
intermediate monocyte4.02e-289
CD14-positive, CD16-positive monocyte4.02e-289
mesenchymal cell3.79e-23354
connective tissue cell1.95e-22361
motile cell6.25e-20386
multi fate stem cell7.31e-17427
stem cell8.55e-17441
somatic stem cell1.94e-16433
basophil2.31e-113
single nucleate cell3.17e-103
mononuclear cell3.17e-103
natural killer cell3.38e-103
pro-NK cell3.38e-103
non-classical monocyte1.44e-093
CD14-low, CD16-positive monocyte1.44e-093
somatic cell2.28e-08588
CD1a-positive Langerhans cell4.56e-072
immature CD1a-positive Langerhans cell4.56e-072
Uber Anatomy
Ontology termp-valuen
bone marrow5.50e-8776
bone element7.95e-8082
hematopoietic system2.08e-7498
blood island2.08e-7498
skeletal element9.52e-7290
immune system4.51e-6993
hemolymphoid system1.94e-66108
skeletal system1.89e-63100
musculoskeletal system2.44e-33167
lateral plate mesoderm1.07e-29203
connective tissue1.82e-21371
mesoderm1.21e-15315
mesoderm-derived structure1.21e-15315
presumptive mesoderm1.21e-15315


Overrepresented TFBS (DNA) motifs on this co-expression cluster
Summary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs

data

Novel motifs


JASPAR motifs
Motifs-log10(p-value)
MA0003.10
MA0004.10.109472
MA0006.10.380502
MA0007.10.279123
MA0009.10.305804
MA0014.15.57992e-11
MA0017.10.240539
MA0019.10.699344
MA0024.10.00383989
MA0025.12.79214
MA0027.11.09652
MA0028.10.00196387
MA0029.10.0271758
MA0030.12.51344
MA0031.13.253
MA0038.10.243229
MA0040.11.08621
MA0041.13.36572
MA0042.13.49312
MA0043.10.520214
MA0046.10.492724
MA0048.11.31362e-05
MA0050.10.68127
MA0051.10.233068
MA0052.10.347816
MA0055.12.3848e-05
MA0056.10
MA0057.10.000241989
MA0058.10.0876777
MA0059.10.128904
MA0060.10.0445943
MA0061.10.53089
MA0063.10
MA0066.10.664825
MA0067.11.03563
MA0068.10.294159
MA0069.10.740661
MA0070.11.34949
MA0071.11.01711
MA0072.10.689922
MA0073.10
MA0074.10.0198915
MA0076.10.0753118
MA0077.10.117506
MA0078.10.536585
MA0081.10.841267
MA0083.10.318444
MA0084.10.52817
MA0087.10.440814
MA0088.14.0869e-06
MA0089.10
MA0090.10.147464
MA0091.10.0685608
MA0092.11.44732
MA0093.10.0213722
MA0095.10
MA0098.10
MA0100.10.107411
MA0101.10.63852
MA0103.10.0039753
MA0105.10.000221753
MA0106.10.236538
MA0107.10.239092
MA0108.20.326151
MA0109.10
MA0111.10.00555052
MA0113.10.406848
MA0114.10.163549
MA0115.10.479109
MA0116.10.0531899
MA0117.10.190199
MA0119.11.38301
MA0122.10.219612
MA0124.11.11163
MA0125.10.52777
MA0130.10
MA0131.10.000474892
MA0132.10
MA0133.10
MA0135.10.0699297
MA0136.12.95829
MA0139.13.6041e-05
MA0140.10.341594
MA0141.10.432244
MA0142.12.09663
MA0143.11.51021
MA0144.10.25852
MA0145.10.0171725
MA0146.12.31149e-13
MA0147.10.275286
MA0148.12.78583
MA0149.10.00873485
MA0062.20.0114189
MA0035.20.234805
MA0039.22.24714e-11
MA0138.20.0766026
MA0002.24.31012
MA0137.20.129744
MA0104.20.116932
MA0047.21.85391
MA0112.20.00488854
MA0065.20.344749
MA0150.14.38524
MA0151.10
MA0152.10.102007
MA0153.10.108181
MA0154.10.00582397
MA0155.10.0289328
MA0156.13.20782
MA0157.12.22826
MA0158.10
MA0159.10.164084
MA0160.10.517967
MA0161.10
MA0162.18.07249e-10
MA0163.11.62851e-11
MA0164.11.61057
MA0080.25.51397
MA0018.20.239624
MA0099.26.50059
MA0079.20
MA0102.20.580158
MA0258.10.265168
MA0259.10.0198807
MA0442.10


ENCODE TF ChIP-seq peak enrichment analysis
Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner



link to source dataset


data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BATF#10538414.39942675543811.67490011737358e-153.09054581905265e-13
BCL11A#53335455.623900791463955.22508117079333e-211.38152468961135e-18
BCL3#602172.587227963275560.0003782859550715860.00375085985585506
CEBPB#1051662.317602393411623.06980761824052e-113.54654466638741e-09
EBF1#1879582.275661132603531.46126945084021e-091.30105302793095e-07
EP300#2033812.41713339129554.88253776334868e-158.59911233501472e-13
FOS#2353692.735061305346763.22990485018335e-155.7860726011715e-13
FOSL1#8061254.373742259512459.60422548873345e-108.93989042618389e-08
FOSL2#2355261.939141919465220.001008172984773160.00721824764219675
GATA1#2623362.150533450118131.18654576496437e-050.000300052428927637
GATA2#2624432.414238169792176.30377529272291e-083.88871817954335e-06
IRF4#3662383.668508731701664.96936013579472e-126.4874375402783e-10
JUN#3725754.134194667071483.38304125992549e-271.18963449880592e-24
JUNB#3726273.640912254692389.49263992099041e-097.23123136913434e-07
JUND#3727692.126131330348464.19968407594022e-104.11454789124879e-08
MAX#4149752.131901599892224.30213242882996e-114.88912305478315e-09
MEF2A#4205403.30277196645713.05784811938672e-113.53664008572126e-09
MEF2C#4208213.821755261432182.11636981411058e-071.12886387648567e-05
NFKB1#4790591.426412960473290.002313368330373040.013121483465803
NR3C1#2908543.561864580983892.00214900800815e-163.95278715023371e-14
POLR2A#54301281.210898707486490.001876557869375760.0110607724656998
POU2F2#5452502.005754197740641.2696983713055e-065.08263810658394e-05
PRDM1#63974.065271764062670.001893027646749720.0111515547633196
RAD21#5885341.550974239848080.006893064838061590.0291884851857896
REST#5978351.48788989015190.01128530113430140.0414090420955383
RFX5#5993371.963756390335766.1726994482562e-050.00101140658562352
SMARCA4#659774.834190850904040.0007053127565256430.00566980903469686
SMARCC1#6599163.077593608432178.2296770213619e-050.0012374017253585
SMARCC2#660172.903469695983630.01134179638764310.0415914983472281
SMC3#9126312.054594353272770.0001179448753619780.00160245152047998
SP1#6667601.506180099949140.0005410014721398080.0046734204093308
SPI1#6688863.108245910717864.50362832701613e-231.32868485549502e-20
STAT3#6774773.568276673043515.58133417082512e-241.70941043831907e-21
TAL1#6886151.973697137275780.0100989689497620.0378187177074901
TCF12#6938391.827066657203830.000174315273860130.00212084260096437
TRIM28#10155272.211207824766910.0001040479485436920.0014514042604454



Relative expression of the co-expression cluster
Summary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data