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Coexpression cluster:C48: Difference between revisions

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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12301741567642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0425916600387234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0390744040629657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0593771573651105,0,0,0,0,0,0,0,0,0,0,0,0.642188997195152,0.262178501405346,0,0,0,0,0,0,0,0.919057790839143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417630340077774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600513954847267,0.349938842455673,0.5370783478329,0,0,0,0,0,0,0,0,0,0.618746092714506,0.344374029099016,0,0.0516822929650548,0,0,0,0,0,0,0,0,0,0,0,0.363385884589859,0,0,0,0,0.64292089077533,0,0.161955095312168,0,0,0,0,0,0.465542998148785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106966425460878,0.452290015913673,0,0,0,0,0.0282390906884824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0329432353726146,0,0,0,0,0.234186964128339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084066558699748,0.0634100406668813,0.150522826464445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0261639379934246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0650101077405693,0,0,0,0,0,0,0,0,0.183688927375771,0,0,0,0,0,0,0,0,0,0,0,0.823855226633641,0,0,0,0,0,0,0.0369091684033041,0,0,0,0,0,0,0.535709967197282,0,0,0.451220938524739,0,0,0.154989455230581,0,0,0,0,0,0,0,0,0,0,0.75260595086517,0,0,0,0,0,0,0,0.0424427259395948,0,0,0,0,0,0,0,0,0.208815630292662,0.27282479499172,0,1.21596829592969,0,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0.412809946118542,0,0,0,0,0,0,0,0,0,0,0.184819397560959,0.103106967823645,0,0,0.0839445661171913,0,0,0,0,0.0267975841371139,0,0.0855462791577618,0,0,0.109541028439739,0.124719478691449,0,0,0,0,0.524579074618365,0.392151074962825,0.258587567436989,0.367637943472982,0.146917605400546,0
|full_id=C48_smooth_bladder_esophagus_colon_penis_aorta_uterus
|full_id=C48_smooth_bladder_esophagus_colon_penis_aorta_uterus
|gostat_on_coexpression_clusters=GO:0003012!muscle system process!7.17758044022067e-11!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0006936!muscle contraction!7.17758044022067e-11!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0005515!protein binding!1.99726356249025e-06!800;8405;1288;2316;7003;6546;29951;4026;10580;7871;6525;4638;2;151230;93986;9043;4629;1264;7168;6840;11142;72;6451;3672;25802;5239;9472$GO:0008092!cytoskeletal protein binding!3.41526941867738e-06!800;2316;4629;1264;7168;6840;10580;25802;6525$GO:0003779!actin binding!3.80060767866034e-06!800;2316;4629;1264;6840;7168;10580;6525$GO:0006939!smooth muscle contraction!1.08494206137411e-05!3779;6525;4629;1264$GO:0005856!cytoskeleton!3.42412418529582e-05!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0005516!calmodulin binding!4.1542266842341e-05!800;6546;4638;4629;1264$GO:0015629!actin cytoskeleton!6.84472069691412e-05!7168;6840;10580;2316;6525;4629$GO:0030036!actin cytoskeleton organization and biogenesis!0.000516257005885001!6840;10580;2316;4629;1264$GO:0030029!actin filament-based process!0.000553522573894243!6840;10580;2316;4629;1264$GO:0006937!regulation of muscle contraction!0.000553522573894243!7168;4660;1264$GO:0008307!structural constituent of muscle!0.000640254860897684!7168;6525;4629$GO:0030016!myofibril!0.00120233532117574!7168;6840;4629$GO:0044449!contractile fiber part!0.00162991093467295!7168;6840;4629$GO:0043292!contractile fiber!0.00174897131744444!7168;6840;4629$GO:0003008!system process!0.00174897131744444!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0005913!cell-cell adherens junction!0.00287580698797806!10580;5239$GO:0005737!cytoplasm!0.00562887267665167!1288;122786;2316;4660;4026;10580;7871;6525;4629;9043;7168;6840;72;6451;7296;10335;25802;9472;5144$GO:0005523!tropomyosin binding!0.006597028072221!800;25802$GO:0031032!actomyosin structure organization and biogenesis!0.006597028072221!4629;1264$GO:0016528!sarcoplasm!0.00812148027606994!10335;9472$GO:0016529!sarcoplasmic reticulum!0.00812148027606994!10335;9472$GO:0043232!intracellular non-membrane-bound organelle!0.00812148027606994!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0043228!non-membrane-bound organelle!0.00812148027606994!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0051015!actin filament binding!0.015752241114304!6840;2316$GO:0006928!cell motility!0.015752241114304!7168;800;3672;2316$GO:0051674!localization of cell!0.015752241114304!7168;800;3672;2316$GO:0032501!multicellular organismal process!0.015752241114304!800;93986;3779;2316;6546;4629;1264;7168;6840;4660;7871;6525$GO:0007517!muscle development!0.015752241114304!6840;6525;4629$GO:0048739!cardiac muscle fiber development!0.015752241114304!4629$GO:0031034!myosin filament assembly!0.015752241114304!4629$GO:0021757!caudate nucleus development!0.015752241114304!93986$GO:0021758!putamen development!0.015752241114304!93986$GO:0030241!muscle thick filament assembly!0.015752241114304!4629$GO:0010037!response to carbon dioxide!0.015752241114304!2$GO:0031033!myosin filament assembly or disassembly!0.015752241114304!4629$GO:0007010!cytoskeleton organization and biogenesis!0.015807135753828!6840;10580;2316;4629;1264$GO:0030198!extracellular matrix organization and biogenesis!0.017184705374285!1288;4629$GO:0030017!sarcomere!0.0182334784381034!7168;4629$GO:0005912!adherens junction!0.0224666838176032!10580;5239$GO:0021756!striatum development!0.026477198365872!93986$GO:0048857!neural nucleus development!0.026477198365872!93986$GO:0005915!zonula adherens!0.026477198365872!10580$GO:0007519!skeletal muscle development!0.0313231195138409!6840;4629$GO:0048251!elastic fiber assembly!0.0335863878673363!4629$GO:0019959!interleukin-8 binding!0.0335863878673363!2$GO:0004687!myosin light chain kinase activity!0.0335863878673363!4638$GO:0014866!skeletal myofibril assembly!0.0335863878673363!4629$GO:0021544!subpallium development!0.0335863878673363!93986$GO:0017114!wide-spectrum protease inhibitor activity!0.0335863878673363!2$GO:0006125!thioredoxin pathway!0.0335863878673363!7296$GO:0006512!ubiquitin cycle!0.0363311256371492!140458;8405;51676;283807$GO:0051239!regulation of multicellular organismal process!0.0387886665319578!7168;4660;1264$GO:0043062!extracellular structure organization and biogenesis!0.0387886665319578!1288;4629$GO:0005862!muscle thin filament tropomyosin!0.0387886665319578!7168$GO:0004614!phosphoglucomutase activity!0.0387886665319578!5239$GO:0045123!cellular extravasation!0.0387886665319578!3672$GO:0043034!costamere!0.0387886665319578!6840$GO:0004791!thioredoxin-disulfide reductase activity!0.0387886665319578!7296$GO:0014706!striated muscle development!0.0393879784106538!6840;4629$GO:0022610!biological adhesion!0.0406253566131771!4026;10580;1288;5239;3672$GO:0007155!cell adhesion!0.0406253566131771!4026;10580;1288;5239;3672$GO:0015081!sodium ion transmembrane transporter activity!0.0447304760524728!6546$GO:0005587!collagen type IV!0.0447304760524728!1288$GO:0007160!cell-matrix adhesion!0.0457581429225451!10580;3672$GO:0031589!cell-substrate adhesion!0.0486661389173214!10580;3672$GO:0004862!cAMP-dependent protein kinase inhibitor activity!0.0498139395661742!11142$GO:0016668!oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor!0.0498139395661742!7296$GO:0030935!sheet-forming collagen!0.0498139395661742!1288
|gostat_on_coexpression_clusters=GO:0003012!muscle system process!7.17758044022067e-11!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0006936!muscle contraction!7.17758044022067e-11!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0005515!protein binding!1.99726356249025e-06!800;8405;1288;2316;7003;6546;29951;4026;10580;7871;6525;4638;2;151230;93986;9043;4629;1264;7168;6840;11142;72;6451;3672;25802;5239;9472$GO:0008092!cytoskeletal protein binding!3.41526941867738e-06!800;2316;4629;1264;7168;6840;10580;25802;6525$GO:0003779!actin binding!3.80060767866034e-06!800;2316;4629;1264;6840;7168;10580;6525$GO:0006939!smooth muscle contraction!1.08494206137411e-05!3779;6525;4629;1264$GO:0005856!cytoskeleton!3.42412418529582e-05!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0005516!calmodulin binding!4.1542266842341e-05!800;6546;4638;4629;1264$GO:0015629!actin cytoskeleton!6.84472069691412e-05!7168;6840;10580;2316;6525;4629$GO:0030036!actin cytoskeleton organization and biogenesis!0.000516257005885001!6840;10580;2316;4629;1264$GO:0030029!actin filament-based process!0.000553522573894243!6840;10580;2316;4629;1264$GO:0006937!regulation of muscle contraction!0.000553522573894243!7168;4660;1264$GO:0008307!structural constituent of muscle!0.000640254860897684!7168;6525;4629$GO:0030016!myofibril!0.00120233532117574!7168;6840;4629$GO:0044449!contractile fiber part!0.00162991093467295!7168;6840;4629$GO:0043292!contractile fiber!0.00174897131744444!7168;6840;4629$GO:0003008!system process!0.00174897131744444!800;3779;6546;4629;1264;7168;4660;7871;6525$GO:0005913!cell-cell adherens junction!0.00287580698797806!10580;5239$GO:0005737!cytoplasm!0.00562887267665167!1288;122786;2316;4660;4026;10580;7871;6525;4629;9043;7168;6840;72;6451;7296;10335;25802;9472;5144$GO:0005523!tropomyosin binding!0.006597028072221!800;25802$GO:0031032!actomyosin structure organization and biogenesis!0.006597028072221!4629;1264$GO:0016528!sarcoplasm!0.00812148027606994!10335;9472$GO:0016529!sarcoplasmic reticulum!0.00812148027606994!10335;9472$GO:0043232!intracellular non-membrane-bound organelle!0.00812148027606994!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0043228!non-membrane-bound organelle!0.00812148027606994!800;122786;2316;4629;7168;6840;10580;72;25802;6525;5144$GO:0051015!actin filament binding!0.015752241114304!6840;2316$GO:0006928!cell motility!0.015752241114304!7168;800;3672;2316$GO:0051674!localization of cell!0.015752241114304!7168;800;3672;2316$GO:0032501!multicellular organismal process!0.015752241114304!800;93986;3779;2316;6546;4629;1264;7168;6840;4660;7871;6525$GO:0007517!muscle development!0.015752241114304!6840;6525;4629$GO:0048739!cardiac muscle fiber development!0.015752241114304!4629$GO:0031034!myosin filament assembly!0.015752241114304!4629$GO:0021757!caudate nucleus development!0.015752241114304!93986$GO:0021758!putamen development!0.015752241114304!93986$GO:0030241!muscle thick filament assembly!0.015752241114304!4629$GO:0010037!response to carbon dioxide!0.015752241114304!2$GO:0031033!myosin filament assembly or disassembly!0.015752241114304!4629$GO:0007010!cytoskeleton organization and biogenesis!0.015807135753828!6840;10580;2316;4629;1264$GO:0030198!extracellular matrix organization and biogenesis!0.017184705374285!1288;4629$GO:0030017!sarcomere!0.0182334784381034!7168;4629$GO:0005912!adherens junction!0.0224666838176032!10580;5239$GO:0021756!striatum development!0.026477198365872!93986$GO:0048857!neural nucleus development!0.026477198365872!93986$GO:0005915!zonula adherens!0.026477198365872!10580$GO:0007519!skeletal muscle development!0.0313231195138409!6840;4629$GO:0048251!elastic fiber assembly!0.0335863878673363!4629$GO:0019959!interleukin-8 binding!0.0335863878673363!2$GO:0004687!myosin light chain kinase activity!0.0335863878673363!4638$GO:0014866!skeletal myofibril assembly!0.0335863878673363!4629$GO:0021544!subpallium development!0.0335863878673363!93986$GO:0017114!wide-spectrum protease inhibitor activity!0.0335863878673363!2$GO:0006125!thioredoxin pathway!0.0335863878673363!7296$GO:0006512!ubiquitin cycle!0.0363311256371492!140458;8405;51676;283807$GO:0051239!regulation of multicellular organismal process!0.0387886665319578!7168;4660;1264$GO:0043062!extracellular structure organization and biogenesis!0.0387886665319578!1288;4629$GO:0005862!muscle thin filament tropomyosin!0.0387886665319578!7168$GO:0004614!phosphoglucomutase activity!0.0387886665319578!5239$GO:0045123!cellular extravasation!0.0387886665319578!3672$GO:0043034!costamere!0.0387886665319578!6840$GO:0004791!thioredoxin-disulfide reductase activity!0.0387886665319578!7296$GO:0014706!striated muscle development!0.0393879784106538!6840;4629$GO:0022610!biological adhesion!0.0406253566131771!4026;10580;1288;5239;3672$GO:0007155!cell adhesion!0.0406253566131771!4026;10580;1288;5239;3672$GO:0015081!sodium ion transmembrane transporter activity!0.0447304760524728!6546$GO:0005587!collagen type IV!0.0447304760524728!1288$GO:0007160!cell-matrix adhesion!0.0457581429225451!10580;3672$GO:0031589!cell-substrate adhesion!0.0486661389173214!10580;3672$GO:0004862!cAMP-dependent protein kinase inhibitor activity!0.0498139395661742!11142$GO:0016668!oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor!0.0498139395661742!7296$GO:0030935!sheet-forming collagen!0.0498139395661742!1288

Revision as of 18:02, 12 September 2012


Full id: C48_smooth_bladder_esophagus_colon_penis_aorta_uterus



Phase1 CAGE Peaks

Hg19::chr10:29787015..29787017,-p@chr10:29787015..29787017
-
Hg19::chr10:29792125..29792126,-p@chr10:29792125..29792126
-
Hg19::chr10:30025857..30025872,-p2@SVIL
Hg19::chr10:30132189..30132193,-p@chr10:30132189..30132193
-
Hg19::chr10:30132220..30132231,-p@chr10:30132220..30132231
-
Hg19::chr10:91567053..91567066,+p@chr10:91567053..91567066
+
Hg19::chr10:97167699..97167703,-p@chr10:97167699..97167703
-
Hg19::chr10:97175924..97175942,-p15@SORBS1
Hg19::chr10:97262585..97262611,-p@chr10:97262585..97262611
-
Hg19::chr10:97262800..97262820,-p@chr10:97262800..97262820
-
Hg19::chr10:97262828..97262865,-p@chr10:97262828..97262865
-
Hg19::chr10:97278763..97278775,-p@chr10:97278763..97278775
-
Hg19::chr11:10715117..10715144,-p4@MRVI1
Hg19::chr11:12696579..12696611,+p4@TEAD1
Hg19::chr11:1507941..1507960,-p3@MOB2
Hg19::chr11:1507965..1507986,-p1@MOB2
Hg19::chr11:1507987..1508013,-p2@MOB2
Hg19::chr12:104645296..104645338,+p11@TXNRD1
Hg19::chr12:41582739..41582757,+p5@PDZRN4
Hg19::chr12:54823108..54823119,+p@chr12:54823108..54823119
+
Hg19::chr12:54823136..54823163,+p@chr12:54823136..54823163
+
Hg19::chr12:9268707..9268758,-p6@A2M
Hg19::chr14:32897580..32897592,+p@chr14:32897580..32897592
+
Hg19::chr14:32902636..32902695,+p5@AKAP6
Hg19::chr14:52164675..52164686,+p36@FRMD6
Hg19::chr14:94443105..94443116,-p5@ASB2
Hg19::chr15:42875413..42875427,+p@chr15:42875413..42875427
+
Hg19::chr15:63176225..63176249,-p1@ENST00000557994
Hg19::chr15:63335899..63336001,+p11@TPM1
Hg19::chr15:63889557..63889568,+p3@FBXL22
Hg19::chr15:63889577..63889595,+p1@FBXL22
Hg19::chr15:99645277..99645292,+p1@SYNM
Hg19::chr15:99653880..99653891,+p@chr15:99653880..99653891
+
Hg19::chr15:99666936..99666947,+p@chr15:99666936..99666947
+
Hg19::chr15:99669639..99669652,+p@chr15:99669639..99669652
+
Hg19::chr15:99669659..99669674,+p@chr15:99669659..99669674
+
Hg19::chr15:99669699..99669783,+p@chr15:99669699..99669783
+
Hg19::chr15:99669806..99669835,+p@chr15:99669806..99669835
+
Hg19::chr15:99669879..99669900,+p@chr15:99669879..99669900
+
Hg19::chr15:99669921..99669958,+p@chr15:99669921..99669958
+
Hg19::chr15:99669965..99669991,+p@chr15:99669965..99669991
+
Hg19::chr15:99669992..99670021,+p@chr15:99669992..99670021
+
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Hg19::chr5:169816392..169816413,-p4@KCNMB1
Hg19::chr5:169816419..169816429,-p5@KCNMB1
Hg19::chr5:169816432..169816437,-p6@KCNMB1
Hg19::chr5:169816462..169816506,+p1@ENST00000518387
Hg19::chr5:52083958..52083976,+p6@ITGA1
Hg19::chr5:59630373..59630388,-p@chr5:59630373..59630388
-
Hg19::chr5:59744512..59744531,-p31@PDE4D
Hg19::chr6:168938239..168938246,+p@chr6:168938239..168938246
+
Hg19::chr6:34985044..34985072,+p@chr6:34985044..34985072
+
Hg19::chr6:99797083..99797125,-p12@C6orf168
Hg19::chr7:114054885..114054910,+p4@FOXP2
Hg19::chr7:114054917..114054938,+p8@FOXP2
Hg19::chr7:115863000..115863015,+p8@TES
Hg19::chr7:115863017..115863029,+p17@TES
Hg19::chr7:115863031..115863054,+p9@TES
Hg19::chr7:134618045..134618059,+p31@CALD1
Hg19::chr7:134618117..134618138,+p24@CALD1
Hg19::chr7:134618152..134618164,-p@chr7:134618152..134618164
-
Hg19::chr7:134618153..134618167,+p27@CALD1
Hg19::chr7:134618177..134618224,+p12@CALD1
Hg19::chr7:134618196..134618207,-p@chr7:134618196..134618207
-
Hg19::chr7:134618245..134618263,-p@chr7:134618245..134618263
-
Hg19::chr7:134618247..134618288,+p19@CALD1
Hg19::chr7:134618292..134618302,+p40@CALD1
Hg19::chr7:134618321..134618341,+p14@CALD1
Hg19::chr7:134618324..134618332,-p@chr7:134618324..134618332
-
Hg19::chr7:134618338..134618366,-p@chr7:134618338..134618366
-
Hg19::chr7:134618355..134618367,+p43@CALD1
Hg19::chr7:134618367..134618377,-p@chr7:134618367..134618377
-
Hg19::chr7:134618369..134618396,+p33@CALD1
Hg19::chr7:134618389..134618426,-p@chr7:134618389..134618426
-
Hg19::chr7:134618402..134618411,+p61@CALD1
Hg19::chr7:134618448..134618467,-p@chr7:134618448..134618467
-
Hg19::chr7:134618472..134618486,-p@chr7:134618472..134618486
-
Hg19::chr7:134618605..134618689,+p@chr7:134618605..134618689
+
Hg19::chr7:134618643..134618753,-p@chr7:134618643..134618753
-
Hg19::chr7:134618733..134618745,+p@chr7:134618733..134618745
+
Hg19::chr7:134618754..134618779,-p@chr7:134618754..134618779
-
Hg19::chr7:65215431..65215448,+p@chr7:65215431..65215448
+
Hg19::chr8:30241380..30241396,+p@chr8:30241380..30241396
+
Hg19::chr8:30365702..30365709,+p@chr8:30365702..30365709
+
Hg19::chr8:30376232..30376236,+p@chr8:30376232..30376236
+
Hg19::chr9:684309..684323,+p11@KANK1
Hg19::chr9:70971518..70971534,+p1@PGM5
Hg19::chrX:107464620..107464631,-p@chrX:107464620..107464631
-
Hg19::chrX:107464685..107464692,-p@chrX:107464685..107464692
-
Hg19::chrX:107681458..107681465,-p7@COL4A6
Hg19::chrX:107681486..107681503,-p4@COL4A6
Hg19::chrX:153218822..153218836,-p@chrX:153218822..153218836
-
Hg19::chrX:153602960..153602977,-p4@FLNA
Hg19::chrX:153602991..153603011,-p3@FLNA
Hg19::chrX:80457682..80457696,+p5@SH3BGRL


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
6.08435798160821e-101.925699301179e-077116Vascular smooth muscle contraction (KEGG):04270
0.0002782335742007770.02436627247562744200Focal adhesion (KEGG):04510
0.0003079465715719110.0243662724756274383Hypertrophic cardiomyopathy (HCM) (KEGG):05410
0.0003907237129996910.0274809011476449390Dilated cardiomyopathy (KEGG):05414
4.53597997803346e-060.0007178188315237955155Myometrial Relaxation and Contraction Pathways (Wikipathways):WP289
2.73950528584538e-050.00346821369188025337Sandbox Pathway (Wikipathways):WP4
0.0008096668539767950.04659264714248285466Hemostasis (Reactome):REACT_604
8.48701001558479e-155.37227733986517e-12849Muscle contraction (Reactome):REACT_17044
0.000712336841549920.04509092207011225IL-6 down reg. targets (Netpath):NetPath_18
1.5191901039302e-083.20549111929273e-068288{ACTB,297} (Static Module):NA
0.0001084707320847030.0114436622349362210{ROCK1,10} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003012muscle system process7.17758044022067e-11
GO:0006936muscle contraction7.17758044022067e-11
GO:0005515protein binding1.99726356249025e-06
GO:0008092cytoskeletal protein binding3.41526941867738e-06
GO:0003779actin binding3.80060767866034e-06
GO:0006939smooth muscle contraction1.08494206137411e-05
GO:0005856cytoskeleton3.42412418529582e-05
GO:0005516calmodulin binding4.1542266842341e-05
GO:0015629actin cytoskeleton6.84472069691412e-05
GO:0030036actin cytoskeleton organization and biogenesis0.000516257005885001
GO:0030029actin filament-based process0.000553522573894243
GO:0006937regulation of muscle contraction0.000553522573894243
GO:0008307structural constituent of muscle0.000640254860897684
GO:0030016myofibril0.00120233532117574
GO:0044449contractile fiber part0.00162991093467295
GO:0043292contractile fiber0.00174897131744444
GO:0003008system process0.00174897131744444
GO:0005913cell-cell adherens junction0.00287580698797806
GO:0005737cytoplasm0.00562887267665167
GO:0005523tropomyosin binding0.006597028072221
GO:0031032actomyosin structure organization and biogenesis0.006597028072221
GO:0016528sarcoplasm0.00812148027606994
GO:0016529sarcoplasmic reticulum0.00812148027606994
GO:0043232intracellular non-membrane-bound organelle0.00812148027606994
GO:0043228non-membrane-bound organelle0.00812148027606994
GO:0051015actin filament binding0.015752241114304
GO:0006928cell motility0.015752241114304
GO:0051674localization of cell0.015752241114304
GO:0032501multicellular organismal process0.015752241114304
GO:0007517muscle development0.015752241114304
GO:0048739cardiac muscle fiber development0.015752241114304
GO:0031034myosin filament assembly0.015752241114304
GO:0021757caudate nucleus development0.015752241114304
GO:0021758putamen development0.015752241114304
GO:0030241muscle thick filament assembly0.015752241114304
GO:0010037response to carbon dioxide0.015752241114304
GO:0031033myosin filament assembly or disassembly0.015752241114304
GO:0007010cytoskeleton organization and biogenesis0.015807135753828
GO:0030198extracellular matrix organization and biogenesis0.017184705374285
GO:0030017sarcomere0.0182334784381034
GO:0005912adherens junction0.0224666838176032
GO:0021756striatum development0.026477198365872
GO:0048857neural nucleus development0.026477198365872
GO:0005915zonula adherens0.026477198365872
GO:0007519skeletal muscle development0.0313231195138409
GO:0048251elastic fiber assembly0.0335863878673363
GO:0019959interleukin-8 binding0.0335863878673363
GO:0004687myosin light chain kinase activity0.0335863878673363
GO:0014866skeletal myofibril assembly0.0335863878673363
GO:0021544subpallium development0.0335863878673363
GO:0017114wide-spectrum protease inhibitor activity0.0335863878673363
GO:0006125thioredoxin pathway0.0335863878673363
GO:0006512ubiquitin cycle0.0363311256371492
GO:0051239regulation of multicellular organismal process0.0387886665319578
GO:0043062extracellular structure organization and biogenesis0.0387886665319578
GO:0005862muscle thin filament tropomyosin0.0387886665319578
GO:0004614phosphoglucomutase activity0.0387886665319578
GO:0045123cellular extravasation0.0387886665319578
GO:0043034costamere0.0387886665319578
GO:0004791thioredoxin-disulfide reductase activity0.0387886665319578
GO:0014706striated muscle development0.0393879784106538
GO:0022610biological adhesion0.0406253566131771
GO:0007155cell adhesion0.0406253566131771
GO:0015081sodium ion transmembrane transporter activity0.0447304760524728
GO:0005587collagen type IV0.0447304760524728
GO:0007160cell-matrix adhesion0.0457581429225451
GO:0031589cell-substrate adhesion0.0486661389173214
GO:0004862cAMP-dependent protein kinase inhibitor activity0.0498139395661742
GO:0016668oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor0.0498139395661742
GO:0030935sheet-forming collagen0.0498139395661742



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
non-terminally differentiated cell6.83e-13180
fibroblast7.85e-0775
Uber Anatomy
Ontology termp-valuen
adult organism3.16e-34115
organism subdivision1.80e-26365
multi-cellular organism4.26e-24659
multi-tissue structure2.82e-22347
anatomical cluster3.29e-19286
anatomical system1.68e-18625
anatomical group3.67e-18626
anatomical conduit3.70e-16241
epithelium4.51e-15309
cell layer5.35e-15312
central nervous system1.27e-1482
organ3.24e-14511
embryo6.07e-14612
neural plate1.25e-1386
presumptive neural plate1.25e-1386
neural tube1.33e-1357
neural rod1.33e-1357
future spinal cord1.33e-1357
neural keel1.33e-1357
regional part of brain3.29e-1359
brain6.60e-1369
future brain6.60e-1369
head7.47e-13123
neurectoderm8.97e-1390
tube9.23e-13194
embryonic structure9.85e-13605
developing anatomical structure9.85e-13605
anterior region of body1.94e-12129
craniocervical region1.94e-12129
regional part of nervous system2.39e-1294
nervous system2.39e-1294
germ layer2.41e-12604
embryonic tissue2.41e-12604
presumptive structure2.41e-12604
epiblast (generic)2.41e-12604
ectoderm-derived structure2.62e-12169
ectoderm7.68e-12173
presumptive ectoderm7.68e-12173
trunk mesenchyme1.89e-10143
anterior neural tube5.19e-1042
regional part of forebrain1.54e-0941
forebrain1.54e-0941
future forebrain1.54e-0941
trunk4.93e-09216
pre-chordal neural plate7.43e-0961
muscle tissue2.43e-0863
musculature2.43e-0863
musculature of body2.43e-0863
organ part2.63e-08219
mesenchyme2.70e-08238
entire embryonic mesenchyme2.70e-08238
gray matter6.70e-0834
brain grey matter6.70e-0834
telencephalon6.75e-0834
somite7.66e-0883
paraxial mesoderm7.66e-0883
presomitic mesoderm7.66e-0883
presumptive segmental plate7.66e-0883
trunk paraxial mesoderm7.66e-0883
presumptive paraxial mesoderm7.66e-0883
regional part of telencephalon1.09e-0733
skeletal muscle tissue1.77e-0761
striated muscle tissue1.77e-0761
myotome1.77e-0761
cerebral hemisphere2.85e-0732
dermomyotome4.66e-0770


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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