Personal tools

Coexpression cluster:C3087: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 7: Line 7:
|ontology_enrichment_uberon=UBERON:0007023!2.87e-32!114;UBERON:0001049!6.08e-30!56;UBERON:0005068!6.08e-30!56;UBERON:0006241!6.08e-30!56;UBERON:0007135!6.08e-30!56;UBERON:0000073!5.53e-28!53;UBERON:0002616!5.53e-28!53;UBERON:0001016!3.42e-26!89;UBERON:0001017!4.13e-26!81;UBERON:0001950!1.96e-23!20;UBERON:0002780!2.27e-23!41;UBERON:0001890!2.27e-23!41;UBERON:0003080!2.27e-23!41;UBERON:0006240!2.27e-23!41;UBERON:0002619!2.44e-23!22;UBERON:0001893!1.81e-22!34;UBERON:0000956!3.29e-22!25;UBERON:0000203!3.29e-22!25;UBERON:0001869!3.52e-22!32;UBERON:0002791!5.30e-22!32;UBERON:0000955!7.36e-21!68;UBERON:0006238!7.36e-21!68;UBERON:0003528!2.37e-20!34;UBERON:0002020!2.37e-20!34;UBERON:0003075!1.20e-19!82;UBERON:0007284!1.20e-19!82;UBERON:0002346!3.08e-18!86;UBERON:0010371!2.27e-15!104;UBERON:0011216!3.63e-15!223;UBERON:0003056!2.15e-14!61;UBERON:0010314!8.46e-13!132;UBERON:0004121!3.45e-12!171;UBERON:0000924!3.45e-12!171;UBERON:0006601!3.45e-12!171;UBERON:0000200!2.17e-11!6;UBERON:0001872!7.24e-10!5;UBERON:0000922!9.63e-09!592;UBERON:0000025!3.16e-08!192;UBERON:0000062!3.69e-08!503;UBERON:0000468!5.52e-08!656;UBERON:0005423!6.72e-08!581;UBERON:0003076!9.42e-08!15;UBERON:0003057!9.42e-08!15;UBERON:0000467!1.33e-07!624;UBERON:0000480!1.50e-07!625;UBERON:0002050!1.60e-07!564;UBERON:0002037!2.77e-07!6;UBERON:0006215!2.77e-07!6;UBERON:0000923!2.99e-07!560;UBERON:0010316!2.99e-07!560;UBERON:0005291!2.99e-07!560;UBERON:0006598!2.99e-07!560;UBERON:0010317!2.99e-07!560;UBERON:0002532!2.99e-07!560;UBERON:0000477!3.41e-07!373;UBERON:0001871!6.31e-07!6;UBERON:0001870!9.81e-07!3
|ontology_enrichment_uberon=UBERON:0007023!2.87e-32!114;UBERON:0001049!6.08e-30!56;UBERON:0005068!6.08e-30!56;UBERON:0006241!6.08e-30!56;UBERON:0007135!6.08e-30!56;UBERON:0000073!5.53e-28!53;UBERON:0002616!5.53e-28!53;UBERON:0001016!3.42e-26!89;UBERON:0001017!4.13e-26!81;UBERON:0001950!1.96e-23!20;UBERON:0002780!2.27e-23!41;UBERON:0001890!2.27e-23!41;UBERON:0003080!2.27e-23!41;UBERON:0006240!2.27e-23!41;UBERON:0002619!2.44e-23!22;UBERON:0001893!1.81e-22!34;UBERON:0000956!3.29e-22!25;UBERON:0000203!3.29e-22!25;UBERON:0001869!3.52e-22!32;UBERON:0002791!5.30e-22!32;UBERON:0000955!7.36e-21!68;UBERON:0006238!7.36e-21!68;UBERON:0003528!2.37e-20!34;UBERON:0002020!2.37e-20!34;UBERON:0003075!1.20e-19!82;UBERON:0007284!1.20e-19!82;UBERON:0002346!3.08e-18!86;UBERON:0010371!2.27e-15!104;UBERON:0011216!3.63e-15!223;UBERON:0003056!2.15e-14!61;UBERON:0010314!8.46e-13!132;UBERON:0004121!3.45e-12!171;UBERON:0000924!3.45e-12!171;UBERON:0006601!3.45e-12!171;UBERON:0000200!2.17e-11!6;UBERON:0001872!7.24e-10!5;UBERON:0000922!9.63e-09!592;UBERON:0000025!3.16e-08!192;UBERON:0000062!3.69e-08!503;UBERON:0000468!5.52e-08!656;UBERON:0005423!6.72e-08!581;UBERON:0003076!9.42e-08!15;UBERON:0003057!9.42e-08!15;UBERON:0000467!1.33e-07!624;UBERON:0000480!1.50e-07!625;UBERON:0002050!1.60e-07!564;UBERON:0002037!2.77e-07!6;UBERON:0006215!2.77e-07!6;UBERON:0000923!2.99e-07!560;UBERON:0010316!2.99e-07!560;UBERON:0005291!2.99e-07!560;UBERON:0006598!2.99e-07!560;UBERON:0010317!2.99e-07!560;UBERON:0002532!2.99e-07!560;UBERON:0000477!3.41e-07!373;UBERON:0001871!6.31e-07!6;UBERON:0001870!9.81e-07!3
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.0116452,0.0619003,0.010441,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.00424558,0.000554732,0.000145865,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.00755159,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.000731968,0.18151,0.111283,0.000326349,0.0125303,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.00295997,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.00378698,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.000682869,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.0174119,0.0265818,0.0427088,0.117549,0.00286684,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.0547453,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.0133424,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.00660014,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.00360981,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.00549554,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.206862,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.0381183,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.00647842,0.0802194,0.117027,0.159052,0.185164,0.01843,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.0163125,0.163376,0.128096,0.0345133,0.00337857,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.0381789,0.451377,0.268011,0.20128,0.517782,0.807281,0.335423,0.629514,0.261553,0.118991,0.373681,0.053682,0.49143,0.0619618,0.395854,0.061507,0.042539,0.0724671,0.00420832,0.00531795,0.0159894,0.39729,0.00204348,0.230901,0.187251,0.0109219,0.181715,0.0186051,0.109988,0.330894,0.00207312,0.427027,0.376924,0.463191,0.280025,0.00734087,0.03861,0.0792797,0.101703,0.484505,0.253571,0.276829,0.0509673,0.0291592,0.0565541,0.0270783,0.155672,0.0669244,0.283727,0.314747,0.577664,0.0474194,0.120054,0.576651,0.416816,0.0478086,0.476744,0.439556,0.0807167,0.213592,0.608919,0.18237,0.706298,0.821217,0.0512465,0.275351,0.236471,0.185661,0.346319,0.535598,0.0405716,0.258117,0.0340542,0.0367769,0.522083,0.0338468,0.281576,0.135034,0.0141151,0.0670502,0.0730934,0.0012205,0.230427,0.421596,0.217247,0.412837,0.671377,0.0462094,0.0477082,0.448039,0.0258593,0.312808,0.117923,0.0451077,0.0747529,0.0284893,0.650179,0.589326,0.50215,0.0054714,0.0671437,0.138202,0.289204,0.0605279,0.683186,0.278044,0.807485,0.0193295,0.228096,0.00847033,0.19763,0.0129079,0.567452,0.104858,0.48267,0.0181002,0.165111,0.858756,0.000835902,0.144809,0.145539,0.08628,0.0818086,0.119597,0.459928,0.252232,0.0122989,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.0460163,0.293698,0.0450006,0.343734,0.0526965,0.305777,0.0144637,0.503082,0.169823,0.00488238,0.0379506,0.0741332,0.0277799,0.405955,0.41707,0.0760312,0.00388249,0.753577,0.0228979,0.171685,0.284166,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.00351186,0.168058,0.159617,0.238587,0.372281,0.232251,0.00132186,0.0891382,0.0595618,0.00710886,0.0769581,0.0688327,0.182325,8.63298e-05,0.00431743,0.404569,0.0847452,0.0793778,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.010955,0.0270501,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.00353493,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.0797897,0.0974211,0.160149,0.00796449,0.0906475,0.0558058,0.28262,0.517717,0.009894,0.0145999,0.0656973,0.00188014,0.0021409,0.00330134,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.00121533,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.0109154,0.253693,0.00203513,0.019326,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.011488,0.141463,0.000891578,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.00452901,0.144075,0.0340203,0.0741807,0.277091,0.389379,0.655293,0.00204117,0.0465945,0.119215,0.192475,0.177967,0.547859,0.00168996,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.00224624,0.291114,0.0355833,0.125606,0.175094,0.911304,0.936279,0.206454,0.0257531,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.0158019,0.104948,0.0266106,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.00886538,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.00435853,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.0200941,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.000329372,0.16791,0.09066,0.220462,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.0785808,0.120614,0.407369,0.231447,0.544776,0.115047,0.0116789,0.00255501,0.448797,0.197484,0.396996,0.0750251,0.406019,0.0841307,0.216033,0.0863135,0.11074,0.722159,0.0886602,0.145312,0.50058,0.443185,0.522904,0.616975,0.871256,0.227104,0.166658,0.250246,0.38649,0.00488219,0.156746,0.55194,0.375373,0.0465139,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.0263888,0.258219,0.0222932,0.032364,0.442897,0.0889613,0.73485,0.683217,0.161598,0.751174,0.0868402,0.150692,0.476802,0.37357,0.454657,0.477353,0.452741,0.399222,0.43491,0.20342,0.200493,0.20558,0.0505073,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.0142192,0.230581,0.120226,0.28424,0.20075,0.314429,0.181415,0.282286,0.446891,0.616388,0.0978616,0.516511,0.0586066,0.656109,0.0655189,0.0700181,0.00015663,0.522605,0.802166,0.0433137,0.222037,0.102227,0.10205,0.462712,0.734551,0.215157,0.204817,0.452428,0.138871,0.308032,0.0147755,0.00151457,0.0833851,0.316453,0.140384,0.175199,0.332919,0.0805711,0.00701509,0.0980968,0.365487,0.0425451,0.0889149,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.0704514,0.275347,0.637444,0.0524515,0.241132,0.0795725,0.30666,0.0516603,0.495883,0.00161207,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.159791,0.196976,0.191517,0.463751,0.601877,0.307334,0.459728,0.283463,0.563586,0.472935,0.0151656,0.273281,0.368095,0.0418805,0.384593,0.00444763,0.0740334,0.339729,0.0209984,0.608187,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.022685,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.0140817,0.219428,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.00753169,0.0986735,0.108462,0.0595618,0.21593,0.000752649,0.0262794,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.0223377,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.0269005,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.0257454,0.0822373,0.00161996,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.018841,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.00414049,0.0367455,0.13497,0.0224775,0.0488311,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.0352561,0.177664,0.00482769,0.264413,0.131761,0.160658,0.206239,0.0213159,0.28689,0.236464,0.0597546,0.115817,0.0257187,0.223831,0.11528,0.00144649,0.0195259,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.0156618,0.158847,0.271275,0.071111,0.270604,0.101021,0.0268373,0.175934,0.157274,0.215705,0.252796,0.205954,0.0107847
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.0116452,0.0619003,0.010441,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.0236364,0.00424558,0.000554732,0.000145865,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.00755159,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.000731968,0.18151,0.111283,0.000326349,0.0125303,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.00295997,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.00378698,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.000682869,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.0174119,0.0265818,0.0427088,0.117549,0.00286684,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.0547453,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.0133424,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.00660014,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.00360981,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.00549554,0.0105855,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.206862,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.0381183,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.00703932,0.136838,0.0815104,0.00647842,0.0802194,0.117027,0.159052,0.185164,0.01843,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.0163125,0.163376,0.128096,0.0345133,0.00337857,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.0381789,0.451377,0.268011,0.20128,0.517782,0.807281,0.335423,0.629514,0.261553,0.118991,0.373681,0.053682,0.49143,0.0619618,0.395854,0.061507,0.042539,0.0724671,0.00420832,0.00531795,0.0159894,0.39729,0.00204348,0.230901,0.187251,0.0109219,0.181715,0.0186051,0.109988,0.330894,0.00207312,0.427027,0.376924,0.463191,0.280025,0.00734087,0.03861,0.0792797,0.101703,0.484505,0.253571,0.276829,0.0509673,0.0291592,0.0565541,0.0270783,0.155672,0.0669244,0.283727,0.314747,0.577664,0.0474194,0.120054,0.576651,0.416816,0.0478086,0.476744,0.439556,0.0807167,0.213592,0.608919,0.18237,0.706298,0.821217,0.0512465,0.275351,0.236471,0.185661,0.346319,0.535598,0.0405716,0.258117,0.0340542,0.0367769,0.522083,0.0338468,0.281576,0.135034,0.0141151,0.0670502,0.0730934,0.0012205,0.230427,0.421596,0.217247,0.412837,0.671377,0.0462094,0.0477082,0.448039,0.0258593,0.312808,0.117923,0.0451077,0.0747529,0.0284893,0.650179,0.589326,0.50215,0.0054714,0.0671437,0.138202,0.289204,0.0605279,0.683186,0.278044,0.807485,0.0193295,0.228096,0.00847033,0.19763,0.0129079,0.567452,0.104858,0.48267,0.0181002,0.165111,0.858756,0.000835902,0.144809,0.145539,0.08628,0.0818086,0.119597,0.459928,0.252232,0.0122989,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.0460163,0.293698,0.0450006,0.343734,0.0526965,0.305777,0.0144637,0.503082,0.169823,0.00488238,0.0379506,0.0741332,0.0277799,0.405955,0.41707,0.0760312,0.00388249,0.753577,0.0228979,0.171685,0.284166,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.00351186,0.168058,0.159617,0.238587,0.372281,0.232251,0.00132186,0.0891382,0.0595618,0.00710886,0.0769581,0.0688327,0.182325,8.63298e-05,0.00431743,0.404569,0.0847452,0.0793778,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.010955,0.0270501,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.00353493,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.153187,0.0797897,0.0974211,0.160149,0.00796449,0.0906475,0.0558058,0.28262,0.517717,0.009894,0.0145999,0.0656973,0.00188014,0.0021409,0.00330134,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.00121533,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.0109154,0.253693,0.00203513,0.019326,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.011488,0.141463,0.000891578,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.00452901,0.144075,0.0340203,0.0741807,0.277091,0.389379,0.655293,0.00204117,0.0465945,0.119215,0.192475,0.177967,0.547859,0.00168996,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.00224624,0.291114,0.0355833,0.125606,0.175094,0.911304,0.936279,0.206454,0.0257531,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.0158019,0.104948,0.0266106,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.00886538,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.00435853,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.0200941,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.000329372,0.16791,0.09066,0.220462,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.0785808,0.120614,0.407369,0.231447,0.544776,0.115047,0.0116789,0.00255501,0.448797,0.197484,0.396996,0.0750251,0.406019,0.0841307,0.216033,0.0863135,0.11074,0.722159,0.0886602,0.145312,0.50058,0.443185,0.522904,0.616975,0.871256,0.227104,0.166658,0.250246,0.38649,0.00488219,0.156746,0.55194,0.375373,0.0465139,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.0263888,0.258219,0.0222932,0.032364,0.442897,0.0889613,0.73485,0.683217,0.161598,0.751174,0.0868402,0.150692,0.476802,0.37357,0.454657,0.477353,0.452741,0.399222,0.43491,0.20342,0.200493,0.20558,0.0505073,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.0142192,0.230581,0.120226,0.28424,0.20075,0.314429,0.181415,0.282286,0.446891,0.616388,0.0978616,0.516511,0.0586066,0.656109,0.0655189,0.0700181,0.00015663,0.522605,0.802166,0.0433137,0.222037,0.102227,0.10205,0.462712,0.734551,0.215157,0.204817,0.452428,0.138871,0.308032,0.0147755,0.00151457,0.0833851,0.316453,0.140384,0.175199,0.332919,0.0805711,0.00701509,0.0980968,0.365487,0.0425451,0.0889149,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.0704514,0.275347,0.637444,0.0524515,0.241132,0.0795725,0.30666,0.0516603,0.495883,0.00161207,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.159791,0.196976,0.191517,0.463751,0.601877,0.307334,0.459728,0.283463,0.563586,0.472935,0.0151656,0.273281,0.368095,0.0418805,0.384593,0.00444763,0.0740334,0.339729,0.0209984,0.608187,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.022685,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.0140817,0.219428,0.0233135,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.00753169,0.0986735,0.108462,0.0595618,0.21593,0.000752649,0.0262794,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.0223377,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.036274,0.0269005,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.0257454,0.0822373,0.00161996,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.018841,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.00414049,0.0367455,0.13497,0.0224775,0.0488311,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.0352561,0.177664,0.00482769,0.264413,0.131761,0.160658,0.206239,0.0213159,0.28689,0.236464,0.0597546,0.115817,0.0257187,0.223831,0.11528,0.00144649,0.0195259,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.0156618,0.158847,0.271275,0.071111,0.270604,0.101021,0.0268373,0.175934,0.157274,0.215705,0.252796,0.205954,0.0107847
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,0.221898,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.242883,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,0.645155,0.388328,0.795576,1.21459,1.3235,1.11965,0.599922,1.36391,0.596053,0.855276,0.567465,2.05816,0.598234,0.777097,0.718382,0.63803,1.44641,0.726632,0.939121,0.808003,0.69206,0.645308,1.02504,0.951993,0.893117,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,1.25415,0.333216,1.45054,0.430728,1.06461,1.02656,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,1.24629,1.39759,0.169933,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,1.37703,0.450952,1.27663,3.92251,0.360456,1.39614,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.188952,0.794219,1.10778,1.35006,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,1.73097,0.788803,1.96632,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,2.04753,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,0.0768232
}}
}}

Revision as of 15:55, 26 November 2012


Full id: C3087_duodenum_temporal_occipital_medial_skin_spinal_parietal



Phase1 CAGE Peaks

Hg19::chr11:117708964..117708982,-p@chr11:117708964..117708982
-
Hg19::chr11:117708986..117708997,-p@chr11:117708986..117708997
-
Hg19::chr5:88057117..88057133,-p@chr5:88057117..88057133
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism2.87e-32114
neural tube6.08e-3056
neural rod6.08e-3056
future spinal cord6.08e-3056
neural keel6.08e-3056
regional part of nervous system5.53e-2853
regional part of brain5.53e-2853
nervous system3.42e-2689
central nervous system4.13e-2681
neocortex1.96e-2320
regional part of forebrain2.27e-2341
forebrain2.27e-2341
anterior neural tube2.27e-2341
future forebrain2.27e-2341
regional part of cerebral cortex2.44e-2322
telencephalon1.81e-2234
cerebral cortex3.29e-2225
pallium3.29e-2225
cerebral hemisphere3.52e-2232
regional part of telencephalon5.30e-2232
brain7.36e-2168
future brain7.36e-2168
brain grey matter2.37e-2034
gray matter2.37e-2034
neural plate1.20e-1982
presumptive neural plate1.20e-1982
neurectoderm3.08e-1886
ecto-epithelium2.27e-15104
organ system subdivision3.63e-15223
pre-chordal neural plate2.15e-1461
structure with developmental contribution from neural crest8.46e-13132
ectoderm-derived structure3.45e-12171
ectoderm3.45e-12171
presumptive ectoderm3.45e-12171
gyrus2.17e-116
parietal lobe7.24e-105
embryo9.63e-09592
tube3.16e-08192
organ3.69e-08503
multi-cellular organism5.52e-08656
developing anatomical structure6.72e-08581
posterior neural tube9.42e-0815
chordal neural plate9.42e-0815
anatomical system1.33e-07624
anatomical group1.50e-07625
embryonic structure1.60e-07564
cerebellum2.77e-076
rhombic lip2.77e-076
germ layer2.99e-07560
germ layer / neural crest2.99e-07560
embryonic tissue2.99e-07560
presumptive structure2.99e-07560
germ layer / neural crest derived structure2.99e-07560
epiblast (generic)2.99e-07560
anatomical cluster3.41e-07373
temporal lobe6.31e-076
frontal cortex9.81e-073


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3087&oldid=2559424"