FFCP PHASE1:Hg19::chr15:27112380..27112407,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2558|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4079|TSSclassifier=S|UniProt=G3V2Q9|association_with_transcript=0bp_to_ENST00000554596,ENST00000557449_5end|coexpression_cluster_id=C35|description=CAGE_peak_4_at_GABRA5_5end|id=chr15:27112380..27112407,+|ontology_enrichment_celltype=CL:0002322!7.03e-07!5|ontology_enrichment_celltype_v019=CL:0002616;2.04e-07;1|ontology_enrichment_celltype_v019_2=CL:0002616,1.80e-07,1|ontology_enrichment_development_v019=UBERON:0006601;1.56e-13;82!UBERON:0006222;1.53e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-72!82;UBERON:0005743!3.14e-71!86;UBERON:0001049!2.85e-69!57;UBERON:0005068!2.85e-69!57;UBERON:0006241!2.85e-69!57;UBERON:0007135!2.85e-69!57;UBERON:0000073!1.17e-65!94;UBERON:0001016!1.17e-65!94;UBERON:0001869!1.77e-61!32;UBERON:0001893!3.38e-61!34;UBERON:0002020!7.36e-61!34;UBERON:0003528!7.36e-61!34;UBERON:0000955!1.22e-60!69;UBERON:0006238!1.22e-60!69;UBERON:0002780!2.64e-60!41;UBERON:0001890!2.64e-60!41;UBERON:0006240!2.64e-60!41;UBERON:0002791!7.16e-59!33;UBERON:0003080!1.19e-58!42;UBERON:0002616!2.54e-57!59;UBERON:0003075!1.00e-50!86;UBERON:0007284!1.00e-50!86;UBERON:0002346!3.30e-50!90;UBERON:0002619!4.49e-48!22;UBERON:0000956!2.36e-45!25;UBERON:0000203!2.36e-45!25;UBERON:0001950!2.73e-43!20;UBERON:0003056!3.40e-42!61;UBERON:0000153!1.37e-32!129;UBERON:0007811!1.37e-32!129;UBERON:0000924!8.27e-32!173;UBERON:0006601!8.27e-32!173;UBERON:0007023!8.62e-32!115;UBERON:0000033!8.71e-32!123;UBERON:0004121!1.74e-31!169;UBERON:0002420!1.39e-17!9;UBERON:0007245!1.39e-17!9;UBERON:0010009!1.39e-17!9;UBERON:0010011!1.39e-17!9;UBERON:0000454!1.39e-17!9;UBERON:0002308!1.39e-16!9;UBERON:0000125!1.39e-16!9;UBERON:0000200!5.18e-15!6;UBERON:0001871!5.48e-15!7;UBERON:0000025!3.28e-14!194;UBERON:0000349!1.56e-13!5;UBERON:0009663!5.91e-13!7;UBERON:0001872!1.43e-12!5;UBERON:0002021!3.84e-12!5;UBERON:0003076!4.29e-12!15;UBERON:0003057!4.29e-12!15;UBERON:0000475!2.32e-11!365;UBERON:0000369!5.60e-11!4;UBERON:0002435!5.60e-11!4;UBERON:0000204!5.60e-11!4;UBERON:0010082!5.60e-11!4;UBERON:0000064!2.59e-10!219;UBERON:0000483!3.71e-09!309;UBERON:0004111!3.81e-09!241;UBERON:0000119!6.09e-09!312;UBERON:0005383!1.35e-08!3;UBERON:0005382!1.35e-08!3;UBERON:0002771!2.80e-08!3;UBERON:0004733!1.34e-07!12;UBERON:0002028!1.34e-07!12;UBERON:0007277!1.34e-07!12;UBERON:0000477!1.69e-07!286;UBERON:0000988!3.37e-07!3;UBERON:0002240!4.20e-07!3;UBERON:0004732!6.12e-07!13|ontology_enrichment_uberon_v019=UBERON:0002619;5.83e-94;22!UBERON:0001869;8.88e-93;32!UBERON:0002791;5.96e-86;32!UBERON:0001893;1.04e-85;34!UBERON:0000956;1.09e-82;25!UBERON:0000203;1.09e-82;25!UBERON:0001950;7.90e-82;20!UBERON:0003528;5.50e-80;34!UBERON:0002020;5.50e-80;34!UBERON:0002780;1.13e-69;41!UBERON:0001890;1.13e-69;41!UBERON:0000073;7.07e-42;53!UBERON:0002616;7.07e-42;53!UBERON:0000955;1.65e-38;68!UBERON:0000200;1.12e-36;6!UBERON:0000349;7.56e-33;5!UBERON:0001017;2.34e-32;75!UBERON:0001872;2.50e-30;5!UBERON:0002420;6.63e-26;9!UBERON:0007245;6.63e-26;9!UBERON:0010009;6.63e-26;9!UBERON:0010011;6.63e-26;9!UBERON:0000454;6.63e-26;9!UBERON:0001016;7.21e-23;83!UBERON:0001871;1.06e-22;6!UBERON:0001870;1.56e-19;3!UBERON:0000369;1.17e-15;4!UBERON:0002435;1.17e-15;4!UBERON:0000204;1.17e-15;4!UBERON:0009663;2.66e-15;7!UBERON:0001876;2.98e-14;2!UBERON:0001954;3.62e-14;2!UBERON:0003022;3.62e-14;2!UBERON:0002421;3.62e-14;2!UBERON:0002600;3.62e-14;2!UBERON:0002771;2.04e-13;2!UBERON:0002702;2.04e-13;2!UBERON:0000125;6.25e-12;9!UBERON:0002308;6.25e-12;9!UBERON:0002021;1.95e-11;5!UBERON:0007023;4.46e-11;114!UBERON:0011216;1.09e-10;132!UBERON:0005383;6.19e-10;3!UBERON:0005382;6.19e-10;3!UBERON:0001874;4.28e-08;1!UBERON:0001882;5.77e-08;1!UBERON:0002022;5.77e-08;1!UBERON:0005403;5.77e-08;1!UBERON:0003112;8.28e-08;1!UBERON:0011158;8.28e-08;1!UBERON:0003128;8.28e-08;1!UBERON:0001703;8.28e-08;1!UBERON:0002241;8.28e-08;1!UBERON:0007190;1.11e-07;1!UBERON:0002581;2.04e-07;1!UBERON:0002902;2.88e-07;1!UBERON:0009899;2.88e-07;1!UBERON:0010314;3.51e-07;132|ontology_enrichment_uberon_v019_2=UBERON:0001869,3.48e-105,32;UBERON:0001893,6.44e-99,34;UBERON:0002791,2.52e-96,32;UBERON:0002780,4.38e-96,41;UBERON:0001890,4.38e-96,41;UBERON:0003080,4.38e-96,41;UBERON:0006240,4.38e-96,41;UBERON:0002619,6.85e-94,22;UBERON:0003528,1.43e-90,34;UBERON:0002020,1.43e-90,34;UBERON:0000956,1.26e-82,25;UBERON:0000203,1.26e-82,25;UBERON:0001950,9.47e-82,20;UBERON:0000073,1.11e-73,53;UBERON:0002616,1.11e-73,53;UBERON:0000955,2.40e-70,68;UBERON:0006238,2.40e-70,68;UBERON:0001049,1.50e-69,56;UBERON:0005068,1.50e-69,56;UBERON:0006241,1.50e-69,56;UBERON:0007135,1.50e-69,56;UBERON:0003056,1.48e-63,61;UBERON:0001017,6.13e-63,81;UBERON:0001016,2.76e-56,89;UBERON:0003075,2.96e-46,82;UBERON:0007284,2.96e-46,82;UBERON:0002346,6.63e-44,86;UBERON:0007023,2.81e-38,114;UBERON:0000200,9.55e-37,6;UBERON:0010371,1.54e-35,104;UBERON:0000349,7.32e-33,5;UBERON:0001872,2.50e-30,5;UBERON:0010314,1.81e-29,132;UBERON:0004121,2.55e-27,171;UBERON:0000924,2.55e-27,171;UBERON:0006601,2.55e-27,171;UBERON:0002420,5.96e-26,9;UBERON:0007245,5.96e-26,9;UBERON:0010009,5.96e-26,9;UBERON:0010011,5.96e-26,9;UBERON:0000454,5.96e-26,9;UBERON:0001871,1.04e-22,6;UBERON:0011216,2.17e-21,223;UBERON:0001870,2.01e-19,3;UBERON:0000025,4.60e-17,192;UBERON:0000369,1.14e-15,4;UBERON:0002435,1.14e-15,4;UBERON:0000204,1.14e-15,4;UBERON:0010082,1.14e-15,4;UBERON:0009663,2.39e-15,7;UBERON:0001876,3.08e-14,2;UBERON:0001954,3.50e-14,2;UBERON:0003022,3.50e-14,2;UBERON:0002421,3.50e-14,2;UBERON:0002600,3.50e-14,2;UBERON:0002771,1.86e-13,2;UBERON:0002702,2.54e-13,2;UBERON:0004111,1.17e-12,240;UBERON:0000125,5.75e-12,9;UBERON:0002308,5.75e-12,9;UBERON:0002021,1.91e-11,5;UBERON:0005383,6.19e-10,3;UBERON:0005382,6.19e-10,3;UBERON:0000483,7.71e-09,306;UBERON:0000119,1.05e-08,309;UBERON:0001874,4.28e-08,1;UBERON:0001882,5.58e-08,1;UBERON:0005403,5.58e-08,1;UBERON:0002022,5.96e-08,1;UBERON:0003112,8.28e-08,1;UBERON:0011158,8.28e-08,1;UBERON:0003128,8.28e-08,1;UBERON:0001703,8.28e-08,1;UBERON:0002241,8.28e-08,1;UBERON:0004761,8.28e-08,1;UBERON:0009617,8.28e-08,1;UBERON:0007190,1.01e-07,1;UBERON:0002581,1.69e-07,1;UBERON:0002902,2.63e-07,1;UBERON:0009899,2.63e-07,1|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,2.61701557230111,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389748020644795,0,0,0,0.355009592516614,0.403008392910561,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.9063623642608,7.7368179025782,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,4.84666373047609,2.13366625772258,7.98455192004777,0,0,0,0,0,0,0,0.291604613383254,0,0.885741385813839,20.983780320821,0,0.110579259931225,0,4.16832254592548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,3.74823113160543,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.26776879963199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80336230967832,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9284453471395,6.94637371169036,0.160753148465019,0.137539436597234,0.415440338029185,0,0,9.41618128199382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,4.51497180137264,2.253436752717,0,0.110929051536852,0.18628920882415,0.830091809617385,0,0,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,2.35039341457942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495743057036009,0,0.318004350653419,0,0,0,0,9.76284221466185,1.41696576325585,0.478901577171454,3.28186182785208,0.756215088665154,1.72893131160545,5.00574501458738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.52501816943244,2.34323429584154,2.27355476151302,4.37569090337957,1.64092442705466,0,0,0,0,0,0,0,0,0,0,0,0.40781839786099,2.89400203676536,0,0,0,24.8242632067283,0,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,4.48743835260037,0.436350690340377,0,0,0,0,0,0.437062287854782,0,0.101988829741982,0,0,0,0,0.267964130156178,0.829169439458779,1.13776295448085,0,0,0.0645889098360061,0.186224142887574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@GABRA5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2558 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4079 | |||
|TSSclassifier=S | |||
|UniProt=G3V2Q9 | |||
|association_with_transcript=0bp_to_ENST00000554596,ENST00000557449_5end | |||
|coexpression_cluster_id=C35 | |||
|description=CAGE_peak_4_at_GABRA5_5end | |||
|id=chr15:27112380..27112407,+ | |||
|ontology_enrichment_celltype=CL:0002322!7.03e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002616;2.04e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002616,1.80e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.56e-13;82!UBERON:0006222;1.53e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@GABRA5 | |||
}} |
Revision as of 06:28, 11 September 2013
Short description: | p4@GABRA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GABRA5_5end |
Coexpression cluster: | C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula |
Association with transcript: | 0bp_to_ENST00000554596, ENST00000557449_5end |
EntrezGene: | GABRA5 |
HGNC: | 4079 |
UniProt: | G3V2Q9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal adipocyte cell | 1.80e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.