FFCP PHASE1:Mm9::chr5:73398161..73398176,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=231290|HGNC=|UniProt=Q3UEZ8,A2RTJ6|association_with_transcript=18bp_to_ENSMUST00000031127,NM_173403,uc008xsk.1_5end|description=CAGE_peak_2_at_Slc10a4_5end|id=chr5:73398161..73398176,+|ontology_enrichment_celltype=CL:0000540!4.62e-18!33;CL:0000047!4.62e-18!33;CL:0000031!4.62e-18!33;CL:0000404!4.62e-18!33;CL:0000393!2.38e-13!39;CL:0000211!2.38e-13!39;CL:0000117!5.02e-12!23;CL:0000337!5.02e-12!23;CL:0002319!1.13e-11!43;CL:0000221!3.86e-11!44;CL:0000133!3.86e-11!44;CL:0000055!1.88e-08!50;CL:0000107!2.23e-08!9|ontology_enrichment_celltype_v019_2=CL:0000540,4.21e-33,33;CL:0000047,4.21e-33,33;CL:0000031,4.21e-33,33;CL:0000404,4.21e-33,33;CL:0000393,6.70e-27,39;CL:0000211,6.70e-27,39;CL:0002319,9.87e-24,43;CL:0000221,4.96e-23,44;CL:0000133,4.96e-23,44;CL:0000117,5.61e-20,23;CL:0000337,5.61e-20,23;CL:0000107,6.44e-16,9;CL:0002321,6.73e-12,70;CL:0000723,1.20e-07,91;CL:0000048,1.20e-07,91;CL:0000034,8.68e-07,97;CL:0002614,8.91e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.43e-18!102;UBERON:0000924!1.43e-18!102;UBERON:0006601!1.43e-18!102;UBERON:0002346!4.57e-17!71;UBERON:0003075!4.57e-17!71;UBERON:0007284!4.57e-17!71;UBERON:0001017!2.47e-15!73;UBERON:0005743!2.47e-15!73;UBERON:0000073!4.84e-15!75;UBERON:0001016!4.84e-15!75;UBERON:0001049!7.73e-09!52;UBERON:0005068!7.73e-09!52;UBERON:0006241!7.73e-09!52;UBERON:0007135!7.73e-09!52;UBERON:0001894!1.27e-08!10;UBERON:0006222!1.27e-08!10;UBERON:0002410!2.23e-08!9;UBERON:0000033!4.40e-08!63;UBERON:0003056!5.10e-08!49;UBERON:0002342!7.56e-08!10;UBERON:0005062!7.56e-08!10;UBERON:0002420!2.52e-07!8;UBERON:0007245!2.52e-07!8;UBERON:0010009!2.52e-07!8;UBERON:0010011!2.52e-07!8;UBERON:0000454!2.52e-07!8;UBERON:0000010!3.68e-07!11;UBERON:0000007!5.39e-07!8;UBERON:0003296!5.39e-07!8;UBERON:0010133!5.39e-07!8;UBERON:0002616!5.48e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.81e-33,73;UBERON:0001016,5.37e-32,75;UBERON:0004121,6.60e-26,95;UBERON:0000924,6.60e-26,95;UBERON:0006601,6.60e-26,95;UBERON:0002346,5.49e-19,64;UBERON:0003075,5.49e-19,64;UBERON:0007284,5.49e-19,64;UBERON:0000073,6.52e-19,54;UBERON:0001049,8.65e-17,52;UBERON:0005068,8.65e-17,52;UBERON:0006241,8.65e-17,52;UBERON:0007135,8.65e-17,52;UBERON:0010314,2.44e-16,92;UBERON:0002410,6.44e-16,9;UBERON:0010371,1.12e-15,73;UBERON:0002420,1.05e-13,8;UBERON:0007245,1.05e-13,8;UBERON:0010009,1.05e-13,8;UBERON:0010011,1.05e-13,8;UBERON:0000454,1.05e-13,8;UBERON:0001894,1.19e-13,10;UBERON:0006222,1.19e-13,10;UBERON:0000010,1.15e-12,11;UBERON:0002240,5.57e-12,6;UBERON:0005174,5.57e-12,6;UBERON:0001137,5.57e-12,6;UBERON:0000007,2.50e-10,8;UBERON:0003296,2.50e-10,8;UBERON:0010133,2.50e-10,8;UBERON:0001948,4.51e-10,5;UBERON:0002315,4.51e-10,5;UBERON:0002616,5.63e-10,46;UBERON:0000955,1.16e-09,47;UBERON:0006238,1.16e-09,47;UBERON:0003076,1.16e-09,12;UBERON:0003057,1.16e-09,12;UBERON:0002780,1.26e-09,39;UBERON:0001890,1.26e-09,39;UBERON:0006240,1.26e-09,39;UBERON:0003080,2.78e-09,40;UBERON:0003056,1.06e-08,49;UBERON:0000369,1.52e-08,5;UBERON:0002435,1.52e-08,5;UBERON:0000204,1.52e-08,5;UBERON:0010082,1.52e-08,5;UBERON:0011216,3.33e-08,194;UBERON:0000013,5.02e-07,3;UBERON:0002038,8.91e-07,3;UBERON:0009663,8.91e-07,3;UBERON:0009661,8.91e-07,3;UBERON:0000125,8.91e-07,3;UBERON:0002308,8.91e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.11596391708813,3.80298842103708,0,0,0,0,0,0,0,0,0,0,4.57041575046086,2.42955395046775,0.489963196859816,0.0958454710182364,0.919218786610021,1.10115880999389,2.29837208553338,5.52983519722476,1.71452174049252,1.55528994124096,2.6045668527838,9.21303896704557,1.68828783009504,5.95913166329559,6.18720029494702,2.27794689278565,2.98239113320481,0.151452386666368,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0,0,2.22663208597237,2.60227990149204,1.82679286987285,0.691846491768175,1.50722640552623,0.705532242814229,1.63366568728578,0,0.433798070759735,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,1.37250180845588,2.26177833803156,0,0.255715457330331,4.1557608911912,2.92034273521964,0.101839363850316,0,0,0,0.130120442962704,0.459804208866946,1.26043490863744,1.05493372485001,0.612328492361951,0.640568601424249,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.162137619091711,0,0,0.134206418760372,0,0.205809224758569,0,0,0.426576501070468,0.696710015581316,0.77320476793256,0.403367049246685,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,0.251335208800269,0.397912944082302,0.58489226135736,0,0.432276099749388,0.199141273254367,0,0.114248512609729,1.1270773567308,0,0,0,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,4.49541651965817,2.34423373184406,0,0,1.26203287766503,1.95219372148319,3.01592756825919,1.19484398976276,3.56477878531831,4.24614796183249,2.83367491172426,5.26060544240361,9.09161889277004,0,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,4.76615448055303,0.900305470156551,1.68166288917581,1.50035924522115,3.01478397191865,2.31879462882692,1.64549020602121,2.13125464380219,0,0,1.10264199027481,0,0,0,0,0.164140899745061,0.874442509889552,6.11903496634682,0,0,0,0,0,0,0,0,0,0,1.26534397432454,0.813277868507395,0.216010681643603,0,0.218362563746178,0.404593039154462,0.41326727862668,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0,0,0,1.73870634628971,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0.798049746802062,0.170733605754134,0,0,0.367687016900028,0,0.412070114477788,0,0.505394423527595,0.25347929989024,0.565879024158229,0.0936415074698824,0.320125762024346,0.229741875822453,0.476293691283074,0.463537303779422,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.290692833264657,0.470546902076653,0.169229215783353,0.182927972872773,0.526139422875686,0.135804113845862,0.561142271657738,0.355905054372522,0.29551344712669,0.409231043169689,0,0.385813221962283,0.749431733813838,0.233931608445408,0.214871054048298,0.191288332068843,0.661774257358546,0|short_description=p2@Slc10a4}} | ||
|EntrezGene=231290 | |||
|HGNC= | |||
|UniProt=Q3UEZ8,A2RTJ6 | |||
|association_with_transcript=18bp_to_ENSMUST00000031127,NM_173403,uc008xsk.1_5end | |||
|description=CAGE_peak_2_at_Slc10a4_5end | |||
|id=chr5:73398161..73398176,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.62e-18!33;CL:0000047!4.62e-18!33;CL:0000031!4.62e-18!33;CL:0000404!4.62e-18!33;CL:0000393!2.38e-13!39;CL:0000211!2.38e-13!39;CL:0000117!5.02e-12!23;CL:0000337!5.02e-12!23;CL:0002319!1.13e-11!43;CL:0000221!3.86e-11!44;CL:0000133!3.86e-11!44;CL:0000055!1.88e-08!50;CL:0000107!2.23e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.21e-33,33;CL:0000047,4.21e-33,33;CL:0000031,4.21e-33,33;CL:0000404,4.21e-33,33;CL:0000393,6.70e-27,39;CL:0000211,6.70e-27,39;CL:0002319,9.87e-24,43;CL:0000221,4.96e-23,44;CL:0000133,4.96e-23,44;CL:0000117,5.61e-20,23;CL:0000337,5.61e-20,23;CL:0000107,6.44e-16,9;CL:0002321,6.73e-12,70;CL:0000723,1.20e-07,91;CL:0000048,1.20e-07,91;CL:0000034,8.68e-07,97;CL:0002614,8.91e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.43e-18!102;UBERON:0000924!1.43e-18!102;UBERON:0006601!1.43e-18!102;UBERON:0002346!4.57e-17!71;UBERON:0003075!4.57e-17!71;UBERON:0007284!4.57e-17!71;UBERON:0001017!2.47e-15!73;UBERON:0005743!2.47e-15!73;UBERON:0000073!4.84e-15!75;UBERON:0001016!4.84e-15!75;UBERON:0001049!7.73e-09!52;UBERON:0005068!7.73e-09!52;UBERON:0006241!7.73e-09!52;UBERON:0007135!7.73e-09!52;UBERON:0001894!1.27e-08!10;UBERON:0006222!1.27e-08!10;UBERON:0002410!2.23e-08!9;UBERON:0000033!4.40e-08!63;UBERON:0003056!5.10e-08!49;UBERON:0002342!7.56e-08!10;UBERON:0005062!7.56e-08!10;UBERON:0002420!2.52e-07!8;UBERON:0007245!2.52e-07!8;UBERON:0010009!2.52e-07!8;UBERON:0010011!2.52e-07!8;UBERON:0000454!2.52e-07!8;UBERON:0000010!3.68e-07!11;UBERON:0000007!5.39e-07!8;UBERON:0003296!5.39e-07!8;UBERON:0010133!5.39e-07!8;UBERON:0002616!5.48e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.81e-33,73;UBERON:0001016,5.37e-32,75;UBERON:0004121,6.60e-26,95;UBERON:0000924,6.60e-26,95;UBERON:0006601,6.60e-26,95;UBERON:0002346,5.49e-19,64;UBERON:0003075,5.49e-19,64;UBERON:0007284,5.49e-19,64;UBERON:0000073,6.52e-19,54;UBERON:0001049,8.65e-17,52;UBERON:0005068,8.65e-17,52;UBERON:0006241,8.65e-17,52;UBERON:0007135,8.65e-17,52;UBERON:0010314,2.44e-16,92;UBERON:0002410,6.44e-16,9;UBERON:0010371,1.12e-15,73;UBERON:0002420,1.05e-13,8;UBERON:0007245,1.05e-13,8;UBERON:0010009,1.05e-13,8;UBERON:0010011,1.05e-13,8;UBERON:0000454,1.05e-13,8;UBERON:0001894,1.19e-13,10;UBERON:0006222,1.19e-13,10;UBERON:0000010,1.15e-12,11;UBERON:0002240,5.57e-12,6;UBERON:0005174,5.57e-12,6;UBERON:0001137,5.57e-12,6;UBERON:0000007,2.50e-10,8;UBERON:0003296,2.50e-10,8;UBERON:0010133,2.50e-10,8;UBERON:0001948,4.51e-10,5;UBERON:0002315,4.51e-10,5;UBERON:0002616,5.63e-10,46;UBERON:0000955,1.16e-09,47;UBERON:0006238,1.16e-09,47;UBERON:0003076,1.16e-09,12;UBERON:0003057,1.16e-09,12;UBERON:0002780,1.26e-09,39;UBERON:0001890,1.26e-09,39;UBERON:0006240,1.26e-09,39;UBERON:0003080,2.78e-09,40;UBERON:0003056,1.06e-08,49;UBERON:0000369,1.52e-08,5;UBERON:0002435,1.52e-08,5;UBERON:0000204,1.52e-08,5;UBERON:0010082,1.52e-08,5;UBERON:0011216,3.33e-08,194;UBERON:0000013,5.02e-07,3;UBERON:0002038,8.91e-07,3;UBERON:0009663,8.91e-07,3;UBERON:0009661,8.91e-07,3;UBERON:0000125,8.91e-07,3;UBERON:0002308,8.91e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.11596391708813,3.80298842103708,0,0,0,0,0,0,0,0,0,0,4.57041575046086,2.42955395046775,0.489963196859816,0.0958454710182364,0.919218786610021,1.10115880999389,2.29837208553338,5.52983519722476,1.71452174049252,1.55528994124096,2.6045668527838,9.21303896704557,1.68828783009504,5.95913166329559,6.18720029494702,2.27794689278565,2.98239113320481,0.151452386666368,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0,0,2.22663208597237,2.60227990149204,1.82679286987285,0.691846491768175,1.50722640552623,0.705532242814229,1.63366568728578,0,0.433798070759735,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,1.37250180845588,2.26177833803156,0,0.255715457330331,4.1557608911912,2.92034273521964,0.101839363850316,0,0,0,0.130120442962704,0.459804208866946,1.26043490863744,1.05493372485001,0.612328492361951,0.640568601424249,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.162137619091711,0,0,0.134206418760372,0,0.205809224758569,0,0,0.426576501070468,0.696710015581316,0.77320476793256,0.403367049246685,0.444756087689741,0.190225626112559,0.474529061544512,0.494096864172033,0.251335208800269,0.397912944082302,0.58489226135736,0,0.432276099749388,0.199141273254367,0,0.114248512609729,1.1270773567308,0,0,0,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,4.49541651965817,2.34423373184406,0,0,1.26203287766503,1.95219372148319,3.01592756825919,1.19484398976276,3.56477878531831,4.24614796183249,2.83367491172426,5.26060544240361,9.09161889277004,0,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,4.76615448055303,0.900305470156551,1.68166288917581,1.50035924522115,3.01478397191865,2.31879462882692,1.64549020602121,2.13125464380219,0,0,1.10264199027481,0,0,0,0,0.164140899745061,0.874442509889552,6.11903496634682,0,0,0,0,0,0,0,0,0,0,1.26534397432454,0.813277868507395,0.216010681643603,0,0.218362563746178,0.404593039154462,0.41326727862668,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0,0,0,1.73870634628971,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0.798049746802062,0.170733605754134,0,0,0.367687016900028,0,0.412070114477788,0,0.505394423527595,0.25347929989024,0.565879024158229,0.0936415074698824,0.320125762024346,0.229741875822453,0.476293691283074,0.463537303779422,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0.290692833264657,0.470546902076653,0.169229215783353,0.182927972872773,0.526139422875686,0.135804113845862,0.561142271657738,0.355905054372522,0.29551344712669,0.409231043169689,0,0.385813221962283,0.749431733813838,0.233931608445408,0.214871054048298,0.191288332068843,0.661774257358546,0 | |||
|short_description=p2@Slc10a4 | |||
}} |
Revision as of 07:59, 14 September 2013
Short description: | p2@Slc10a4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc10a4_5end |
Coexpression cluster: | NA |
Association with transcript: | 18bp_to_ENSMUST00000031127, NM_173403, uc008xsk.1_5end |
EntrezGene: | Slc10a4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.21e-33 | 33 |
neuronal stem cell | 4.21e-33 | 33 |
neuroblast | 4.21e-33 | 33 |
electrically signaling cell | 4.21e-33 | 33 |
electrically responsive cell | 6.70e-27 | 39 |
electrically active cell | 6.70e-27 | 39 |
neural cell | 9.87e-24 | 43 |
ectodermal cell | 4.96e-23 | 44 |
neurectodermal cell | 4.96e-23 | 44 |
CNS neuron (sensu Vertebrata) | 5.61e-20 | 23 |
neuroblast (sensu Vertebrata) | 5.61e-20 | 23 |
autonomic neuron | 6.44e-16 | 9 |
embryonic cell | 6.73e-12 | 70 |
somatic stem cell | 1.20e-07 | 91 |
multi fate stem cell | 1.20e-07 | 91 |
stem cell | 8.68e-07 | 97 |
neuron of the substantia nigra | 8.91e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.