FFCP PHASE1:Mm9::chrX:149574617..149574634,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=245670|HGNC=|MCL_coexpression_id=1|UniProt=G3UYP1|association_with_transcript=87bp_to_ENSMUST00000144175_5end|description=CAGE_peak_3_at_Rragb_5end|id=chrX:149574617..149574634,+|ontology_enrichment_celltype=CL:0000540!8.79e-09!33;CL:0000047!8.79e-09!33;CL:0000031!8.79e-09!33;CL:0000404!8.79e-09!33;CL:0000393!2.57e-07!39;CL:0000211!2.57e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.26e-14,33;CL:0000047,2.26e-14,33;CL:0000031,2.26e-14,33;CL:0000404,2.26e-14,33;CL:0000117,1.67e-12,23;CL:0000337,1.67e-12,23;CL:0000393,2.70e-12,39;CL:0000211,2.70e-12,39;CL:0002319,1.48e-09,43;CL:0000221,3.35e-09,44;CL:0000133,3.35e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.97e-22!73;UBERON:0005743!1.97e-22!73;UBERON:0000073!1.95e-21!75;UBERON:0001016!1.95e-21!75;UBERON:0002346!2.56e-19!71;UBERON:0003075!2.56e-19!71;UBERON:0007284!2.56e-19!71;UBERON:0004121!8.08e-18!102;UBERON:0000924!8.08e-18!102;UBERON:0006601!8.08e-18!102;UBERON:0001049!9.92e-18!52;UBERON:0005068!9.92e-18!52;UBERON:0006241!9.92e-18!52;UBERON:0007135!9.92e-18!52;UBERON:0000033!3.28e-17!63;UBERON:0000955!5.65e-17!50;UBERON:0006238!5.65e-17!50;UBERON:0002616!2.11e-16!49;UBERON:0003056!1.04e-13!49;UBERON:0003080!1.07e-13!40;UBERON:0007811!2.27e-13!86;UBERON:0002780!5.13e-13!39;UBERON:0001890!5.13e-13!39;UBERON:0006240!5.13e-13!39;UBERON:0000153!7.83e-13!94;UBERON:0002020!1.77e-10!34;UBERON:0002791!4.04e-08!29;UBERON:0003528!4.04e-08!29;UBERON:0001893!4.04e-08!29;UBERON:0002021!4.32e-07!10;UBERON:0000411!4.32e-07!10;UBERON:0001950!4.32e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.92e-39,73;UBERON:0001016,5.49e-38,75;UBERON:0000073,6.29e-35,54;UBERON:0001049,3.29e-32,52;UBERON:0005068,3.29e-32,52;UBERON:0006241,3.29e-32,52;UBERON:0007135,3.29e-32,52;UBERON:0002346,4.62e-28,64;UBERON:0003075,4.62e-28,64;UBERON:0007284,4.62e-28,64;UBERON:0004121,5.48e-28,95;UBERON:0000924,5.48e-28,95;UBERON:0006601,5.48e-28,95;UBERON:0000955,6.87e-27,47;UBERON:0006238,6.87e-27,47;UBERON:0002616,8.71e-26,46;UBERON:0010371,2.45e-24,73;UBERON:0003080,1.80e-22,40;UBERON:0002780,3.69e-21,39;UBERON:0001890,3.69e-21,39;UBERON:0006240,3.69e-21,39;UBERON:0003056,7.48e-18,49;UBERON:0010314,9.03e-18,92;UBERON:0002020,1.47e-17,34;UBERON:0003528,5.74e-13,29;UBERON:0002791,5.74e-13,29;UBERON:0001893,5.74e-13,29;UBERON:0002021,9.74e-13,10;UBERON:0000411,9.74e-13,10;UBERON:0001950,9.74e-13,10;UBERON:0003076,4.45e-10,12;UBERON:0003057,4.45e-10,12;UBERON:0000025,9.88e-10,114;UBERON:0001894,1.16e-09,10;UBERON:0006222,1.16e-09,10;UBERON:0004111,5.29e-09,122;UBERON:0002619,5.50e-08,17;UBERON:0002420,1.30e-07,8;UBERON:0007245,1.30e-07,8;UBERON:0010009,1.30e-07,8;UBERON:0010011,1.30e-07,8;UBERON:0000454,1.30e-07,8;UBERON:0002240,1.51e-07,6;UBERON:0005174,1.51e-07,6;UBERON:0001137,1.51e-07,6;UBERON:0000956,2.45e-07,21;UBERON:0001869,2.45e-07,21;UBERON:0000203,2.45e-07,21;UBERON:0002950,4.66e-07,4;UBERON:0001891,4.66e-07,4;UBERON:0009616,4.66e-07,4;UBERON:0010286,4.66e-07,4;UBERON:0000007,5.58e-07,8;UBERON:0003296,5.58e-07,8;UBERON:0010133,5.58e-07,8;UBERON:0011216,6.32e-07,194|phase1_expression=1.28119077683835,0,0,0,0,0,0,0.258246646883153,0.703943610758334,0,0,0.398860794976682,0.684802919724823,1.31130603628496,0,0,0,1.10411757875383,0.548457734422955,1.27316895539409,0.850432901510698,1.78723712161594,2.08959831311148,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,1.25896817975577,0.912392380975631,0.183546752161682,0,0,0.219686182734472,0.388859798148567,0.139986421625363,0,0.503347818173209,0.725362142011344,0.672187598284928,0,0,0,1.21389876515759,1.5869729378161,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.270011876663381,0,1.99955689082663,2.65042249141936,0.367472397644862,0,0,3.30347642998166,3.83062014255563,5.37622866396852,1.05509030184155,1.00636407962651,1.56274011167028,3.35019598801657,5.6276261003168,7.18151764551008,1.47314292736834,2.13557521198654,1.4911955666024,0.227178579999552,0,0,0,0,0,0,0,0.140444420131752,0.852151612890289,0.519572009205738,0,0.704217098883403,1.28326477414318,0,0,0,0,0,0,0.517875767294343,1.63286352971307,0.173485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.352766121407114,0.628332956648377,0,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,3.80615036115011,3.56059401582874,0,0.359445373517761,0.599902730993408,0,5.99162557619291,5.03250663100489,0.753926112677186,5.04090528557602,3.83573185995496,6.2336413367868,5.84068547043927,0.101839363850316,0.373220911830279,1.26361379216837,0.210441855886474,0.650602214813519,0.459804208866946,0.180062129805349,0.452114453507145,0.340182495756639,0.384341160854549,0.374806898238915,1.03481348295606,0.215567992932842,0.756424320671277,0,0.43839146485515,0.278047249225598,0.348252166522167,0,0.995171334092466,0,0,0.284163499395593,0.621377317606506,0.703578179943289,0.720248245844059,0.23674473558521,0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| ||
|EntrezGene=245670 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=G3UYP1 | |||
|association_with_transcript=87bp_to_ENSMUST00000144175_5end | |||
|description=CAGE_peak_3_at_Rragb_5end | |||
|id=chrX:149574617..149574634,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.79e-09!33;CL:0000047!8.79e-09!33;CL:0000031!8.79e-09!33;CL:0000404!8.79e-09!33;CL:0000393!2.57e-07!39;CL:0000211!2.57e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.26e-14,33;CL:0000047,2.26e-14,33;CL:0000031,2.26e-14,33;CL:0000404,2.26e-14,33;CL:0000117,1.67e-12,23;CL:0000337,1.67e-12,23;CL:0000393,2.70e-12,39;CL:0000211,2.70e-12,39;CL:0002319,1.48e-09,43;CL:0000221,3.35e-09,44;CL:0000133,3.35e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.97e-22!73;UBERON:0005743!1.97e-22!73;UBERON:0000073!1.95e-21!75;UBERON:0001016!1.95e-21!75;UBERON:0002346!2.56e-19!71;UBERON:0003075!2.56e-19!71;UBERON:0007284!2.56e-19!71;UBERON:0004121!8.08e-18!102;UBERON:0000924!8.08e-18!102;UBERON:0006601!8.08e-18!102;UBERON:0001049!9.92e-18!52;UBERON:0005068!9.92e-18!52;UBERON:0006241!9.92e-18!52;UBERON:0007135!9.92e-18!52;UBERON:0000033!3.28e-17!63;UBERON:0000955!5.65e-17!50;UBERON:0006238!5.65e-17!50;UBERON:0002616!2.11e-16!49;UBERON:0003056!1.04e-13!49;UBERON:0003080!1.07e-13!40;UBERON:0007811!2.27e-13!86;UBERON:0002780!5.13e-13!39;UBERON:0001890!5.13e-13!39;UBERON:0006240!5.13e-13!39;UBERON:0000153!7.83e-13!94;UBERON:0002020!1.77e-10!34;UBERON:0002791!4.04e-08!29;UBERON:0003528!4.04e-08!29;UBERON:0001893!4.04e-08!29;UBERON:0002021!4.32e-07!10;UBERON:0000411!4.32e-07!10;UBERON:0001950!4.32e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.92e-39,73;UBERON:0001016,5.49e-38,75;UBERON:0000073,6.29e-35,54;UBERON:0001049,3.29e-32,52;UBERON:0005068,3.29e-32,52;UBERON:0006241,3.29e-32,52;UBERON:0007135,3.29e-32,52;UBERON:0002346,4.62e-28,64;UBERON:0003075,4.62e-28,64;UBERON:0007284,4.62e-28,64;UBERON:0004121,5.48e-28,95;UBERON:0000924,5.48e-28,95;UBERON:0006601,5.48e-28,95;UBERON:0000955,6.87e-27,47;UBERON:0006238,6.87e-27,47;UBERON:0002616,8.71e-26,46;UBERON:0010371,2.45e-24,73;UBERON:0003080,1.80e-22,40;UBERON:0002780,3.69e-21,39;UBERON:0001890,3.69e-21,39;UBERON:0006240,3.69e-21,39;UBERON:0003056,7.48e-18,49;UBERON:0010314,9.03e-18,92;UBERON:0002020,1.47e-17,34;UBERON:0003528,5.74e-13,29;UBERON:0002791,5.74e-13,29;UBERON:0001893,5.74e-13,29;UBERON:0002021,9.74e-13,10;UBERON:0000411,9.74e-13,10;UBERON:0001950,9.74e-13,10;UBERON:0003076,4.45e-10,12;UBERON:0003057,4.45e-10,12;UBERON:0000025,9.88e-10,114;UBERON:0001894,1.16e-09,10;UBERON:0006222,1.16e-09,10;UBERON:0004111,5.29e-09,122;UBERON:0002619,5.50e-08,17;UBERON:0002420,1.30e-07,8;UBERON:0007245,1.30e-07,8;UBERON:0010009,1.30e-07,8;UBERON:0010011,1.30e-07,8;UBERON:0000454,1.30e-07,8;UBERON:0002240,1.51e-07,6;UBERON:0005174,1.51e-07,6;UBERON:0001137,1.51e-07,6;UBERON:0000956,2.45e-07,21;UBERON:0001869,2.45e-07,21;UBERON:0000203,2.45e-07,21;UBERON:0002950,4.66e-07,4;UBERON:0001891,4.66e-07,4;UBERON:0009616,4.66e-07,4;UBERON:0010286,4.66e-07,4;UBERON:0000007,5.58e-07,8;UBERON:0003296,5.58e-07,8;UBERON:0010133,5.58e-07,8;UBERON:0011216,6.32e-07,194 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0,0,0.258246646883153,0.703943610758334,0,0,0.398860794976682,0.684802919724823,1.31130603628496,0,0,0,1.10411757875383,0.548457734422955,1.27316895539409,0.850432901510698,1.78723712161594,2.08959831311148,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,1.25896817975577,0.912392380975631,0.183546752161682,0,0,0.219686182734472,0.388859798148567,0.139986421625363,0,0.503347818173209,0.725362142011344,0.672187598284928,0,0,0,1.21389876515759,1.5869729378161,1.26766280701236,0,0,0,0,0,0.299600110518405,0,0.103689612308478,0.270011876663381,0,1.99955689082663,2.65042249141936,0.367472397644862,0,0,3.30347642998166,3.83062014255563,5.37622866396852,1.05509030184155,1.00636407962651,1.56274011167028,3.35019598801657,5.6276261003168,7.18151764551008,1.47314292736834,2.13557521198654,1.4911955666024,0.227178579999552,0,0,0,0,0,0,0,0.140444420131752,0.852151612890289,0.519572009205738,0,0.704217098883403,1.28326477414318,0,0,0,0,0,0,0.517875767294343,1.63286352971307,0.173485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.352766121407114,0.628332956648377,0,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,3.80615036115011,3.56059401582874,0,0.359445373517761,0.599902730993408,0,5.99162557619291,5.03250663100489,0.753926112677186,5.04090528557602,3.83573185995496,6.2336413367868,5.84068547043927,0.101839363850316,0.373220911830279,1.26361379216837,0.210441855886474,0.650602214813519,0.459804208866946,0.180062129805349,0.452114453507145,0.340182495756639,0.384341160854549,0.374806898238915,1.03481348295606,0.215567992932842,0.756424320671277,0,0.43839146485515,0.278047249225598,0.348252166522167,0,0.995171334092466,0,0,0.284163499395593,0.621377317606506,0.703578179943289,0.720248245844059,0.23674473558521,0.196764231747404,0.617068451549513,0.465067889500816,0,0,0.329119699826961,0.164167464079095,0,0,0,0.134206418760372,3.57492912559016,0.411618449517138,0,0,0,0,0.128867461322093,0,0,0.380451252225118,0,0,0.251335208800269,0.198956472041151,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,1.1270773567308,0,0,0.280543279561274,0.189709611372772,0.147610147979602,0,0.123397163921801,0,0,0,0.449724224769707,0,0.241177159752417,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.37898282354097,0,0,0,0.167506257441816,0,0,0,0,0,0.327726629431476,0.172684981865896,0,0,0,0,0,3.85321415970701,4.80567915028033,0,0,0.315508219416257,1.56175497718655,1.07711698866399,1.43381278771531,1.33679204449436,0.283076530788832,0.809621403349789,1.16902343164525,0.395287777946524,2.57057053137446,0.567760340833074,0.178065603667255,0.325773918707152,0.989820737835213,0,0.728341908464944,0.906970670894253,0.377210159511796,0.295301892880773,0.307435147943927,0.775284879504663,0.363533729477506,0.356497378384721,0.632073515871632,1.05418608574999,0,3.40439605753788,1.26042765821917,1.16422815404479,2.14337035031592,2.12808280370728,1.78368817602071,0.822745103010605,2.13125464380219,0,0,0.661585194164886,0,0,0.120625849856312,0,0,0,3.33765543618917,0.683483523191411,0.206386867963223,0.185194527369712,0.188368457004691,0.136694227721025,0,1.69978429993855,0.559805809294632,1.38199973804424,0,0.158167996790568,0.406638934253697,0.324016022465404,0,0.218362563746178,0,0.165306911450672,0,0,0.621339313086926,1.12738587736838,0.149516546043979,0.330916980914195,0.583353565032143,0.516639293910924,0.675824501963113,0.58678619322877,1.3020438484395,4.50895181030557,2.17425708743405,1.72818003754719,0.632022241256357,0.202725215290164,0.102710957164827,0,0.358053391334963,0,0.360586348559907,0.147689527174577,0.201932899896295,0.15241361331,0.302478555410522,0.194915761479505,0.769694733122636,0,0,0,0,0,0.386379188064381,0.187682475451182,0.36630324853453,0.428736758158132,0.501572104035363,2.82375921308533,2.76195141904306,1.14579102687879,3.43706364687375,2.74033007908257,3.7769694869485,5.40018000185445,1.35096360967266,4.98456649882625,3.62432218226274,0.207574695168353,0.399024873401031,0.170733605754134,0,0,0.183843508450014,0.222246727801615,1.03017528619447,0.64183841918363,0,0.25347929989024,0.754505365544305,0,0.192075457214608,0.229741875822453,0,0.231768651889711,0.77163688185482,0.412085900803307,0.441596760403192,0,0,0.715308569841963,0.436039249896986,0.470546902076653,0.0846146078916765,0,0.526139422875686,0.543216455383447,0.561142271657738,0.355905054372522,0.394017929502254,0.409231043169689,0.464810523557898,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p3@Rragb | |||
}} |
Revision as of 19:31, 14 September 2013
Short description: | p3@Rragb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rragb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 87bp_to_ENSMUST00000144175_5end |
EntrezGene: | Rragb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.26e-14 | 33 |
neuronal stem cell | 2.26e-14 | 33 |
neuroblast | 2.26e-14 | 33 |
electrically signaling cell | 2.26e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.67e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.67e-12 | 23 |
electrically responsive cell | 2.70e-12 | 39 |
electrically active cell | 2.70e-12 | 39 |
neural cell | 1.48e-09 | 43 |
ectodermal cell | 3.35e-09 | 44 |
neurectodermal cell | 3.35e-09 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.