FFCP PHASE1:Hg19::chr4:146402997..146403020,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4086 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |||
|TSSclassifier=strong | |||
|UniProt=D6RD62 | |||
|association_with_transcript=-2bp_to_ENST00000512019_5end | |||
|description=CAGE_peak_1_at_SMAD1_5end | |||
|id=chr4:146402997..146403020,+ | |||
|ontology_enrichment_celltype=CL:0002139!2.09e-10!24;CL:0000220!5.43e-09!246;CL:0002321!1.24e-08!248;CL:0000071!1.99e-07!18;CL:0002546!1.99e-07!18;CL:0000115!2.19e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.80e-10;24!CL:0000071;1.75e-07;18!CL:0000115;7.91e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.98e-10,24;CL:0002321,7.53e-09,250;CL:0000115,1.07e-07,36;CL:0000071,1.92e-07,18;CL:0002546,1.92e-07,18 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.89e-08;82!CL:0002546;1.75e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!5.11e-29!241;UBERON:0000468!2.04e-27!659;UBERON:0000475!8.26e-27!365;UBERON:0000467!2.53e-25!625;UBERON:0000483!5.88e-25!309;UBERON:0000480!7.61e-25!626;UBERON:0000119!9.83e-25!312;UBERON:0000477!2.01e-24!286;UBERON:0001049!4.12e-22!57;UBERON:0005068!4.12e-22!57;UBERON:0006241!4.12e-22!57;UBERON:0007135!4.12e-22!57;UBERON:0001017!4.12e-22!82;UBERON:0005743!8.82e-22!86;UBERON:0000073!1.95e-21!94;UBERON:0001016!1.95e-21!94;UBERON:0000025!2.03e-21!194;UBERON:0000033!4.95e-20!123;UBERON:0000955!3.84e-19!69;UBERON:0006238!3.84e-19!69;UBERON:0000924!4.62e-19!173;UBERON:0006601!4.62e-19!173;UBERON:0000153!6.56e-19!129;UBERON:0007811!6.56e-19!129;UBERON:0004121!7.50e-19!169;UBERON:0002616!2.49e-18!59;UBERON:0007023!2.81e-18!115;UBERON:0002050!3.19e-18!605;UBERON:0005423!3.19e-18!605;UBERON:0000923!4.56e-18!604;UBERON:0005291!4.56e-18!604;UBERON:0006598!4.56e-18!604;UBERON:0002532!4.56e-18!604;UBERON:0000922!5.23e-18!612;UBERON:0000481!8.67e-18!347;UBERON:0002780!3.60e-17!41;UBERON:0001890!3.60e-17!41;UBERON:0006240!3.60e-17!41;UBERON:0002346!5.02e-17!90;UBERON:0003075!5.35e-17!86;UBERON:0007284!5.35e-17!86;UBERON:0003080!7.39e-17!42;UBERON:0002020!2.03e-14!34;UBERON:0003528!2.03e-14!34;UBERON:0001893!2.77e-14!34;UBERON:0002791!5.80e-14!33;UBERON:0001869!1.16e-13!32;UBERON:0000062!3.34e-13!511;UBERON:0003056!3.97e-13!61;UBERON:0000956!2.57e-10!25;UBERON:0000203!2.57e-10!25;UBERON:0002619!2.98e-09!22;UBERON:0001950!3.79e-08!20;UBERON:0001986!1.99e-07!18;UBERON:0004638!1.99e-07!18;UBERON:0004852!1.99e-07!18;UBERON:0000064!6.72e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.01e-12;34!UBERON:0002020;1.01e-12;34!UBERON:0002780;2.06e-12;41!UBERON:0001890;2.06e-12;41!UBERON:0001869;2.36e-12;32!UBERON:0000073;2.48e-12;53!UBERON:0002616;2.48e-12;53!UBERON:0001893;2.88e-12;34!UBERON:0002791;3.28e-12;32!UBERON:0000956;2.93e-10;25!UBERON:0000203;2.93e-10;25!UBERON:0001017;1.03e-09;75!UBERON:0002619;3.15e-09;22!UBERON:0000955;1.67e-08;68!UBERON:0001016;2.06e-08;83!UBERON:0001950;4.10e-08;20!UBERON:0004638;1.75e-07;18!UBERON:0001986;1.75e-07;18!UBERON:0004852;1.75e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,3.68e-29,240;UBERON:0000483,4.94e-25,306;UBERON:0000119,8.33e-25,309;UBERON:0011216,4.12e-24,223;UBERON:0001049,1.80e-22,56;UBERON:0005068,1.80e-22,56;UBERON:0006241,1.80e-22,56;UBERON:0007135,1.80e-22,56;UBERON:0001017,2.31e-22,81;UBERON:0001016,6.52e-22,89;UBERON:0000025,2.58e-21,192;UBERON:0000073,7.25e-21,53;UBERON:0002616,7.25e-21,53;UBERON:0004121,2.39e-20,171;UBERON:0000924,2.39e-20,171;UBERON:0006601,2.39e-20,171;UBERON:0000955,2.16e-19,68;UBERON:0006238,2.16e-19,68;UBERON:0010371,2.23e-18,104;UBERON:0007023,1.08e-17,114;UBERON:0003075,1.40e-17,82;UBERON:0007284,1.40e-17,82;UBERON:0002346,1.41e-17,86;UBERON:0002780,3.27e-17,41;UBERON:0001890,3.27e-17,41;UBERON:0003080,3.27e-17,41;UBERON:0006240,3.27e-17,41;UBERON:0002050,7.07e-16,564;UBERON:0005423,2.67e-15,581;UBERON:0010314,5.07e-15,132;UBERON:0000923,5.25e-15,560;UBERON:0010316,5.25e-15,560;UBERON:0005291,5.25e-15,560;UBERON:0006598,5.25e-15,560;UBERON:0010317,5.25e-15,560;UBERON:0002532,5.25e-15,560;UBERON:0003528,1.87e-14,34;UBERON:0002020,1.87e-14,34;UBERON:0000922,2.08e-14,592;UBERON:0001893,2.56e-14,34;UBERON:0001869,1.08e-13,32;UBERON:0002791,1.78e-13,32;UBERON:0003056,5.64e-13,61;UBERON:0000956,2.43e-10,25;UBERON:0000203,2.43e-10,25;UBERON:0002619,2.84e-09,22;UBERON:0001950,3.63e-08,20;UBERON:0004638,1.92e-07,18;UBERON:0001986,1.92e-07,18;UBERON:0004852,1.92e-07,18 | |||
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| |||
|short_description=p1@SMAD1 | |||
}} |
Revision as of 03:21, 22 January 2014
Short description: | p1@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000512019_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | D6RD62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.98e-10 | 24 |
embryonic cell | 7.53e-09 | 250 |
endothelial cell | 1.07e-07 | 36 |
blood vessel endothelial cell | 1.92e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.92e-07 | 18 |