FFCP PHASE1:Hg19::chr17:42989173..42989181,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:42989173..42989181,-
|short_description=p40@GFAP
|description=CAGE_peak_40_at_GFAP_5end
|association_with_transcript=-375bp_to_BC127871_5end
|EntrezGene=...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2670 | |EntrezGene=2670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4235 | |HGNC=4235 | ||
|TSSclassifier=strong | |||
|UniProt=A1L194 | |UniProt=A1L194 | ||
|association_with_transcript=-375bp_to_BC127871_5end | |||
|cluster_id=chr17:42989173..42989181,- | |||
|coexpression_cluster_id=C291 | |||
|description=CAGE_peak_40_at_GFAP_5end | |||
|id=chr17:42989173..42989181,- | |||
|ontology_enrichment_celltype=CL:0002605!1.22e-14!3;CL:0000128!7.18e-11!7;CL:0000126!7.18e-11!7;CL:0000127!7.18e-11!7;CL:0002453!7.18e-11!7 | |||
|ontology_enrichment_celltype_v019=CL:0002605;8.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.23e-50;3!UBERON:0003057;1.23e-50;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.35e-110!57;UBERON:0005068!8.35e-110!57;UBERON:0006241!8.35e-110!57;UBERON:0007135!8.35e-110!57;UBERON:0001017!1.97e-91!82;UBERON:0002616!3.28e-88!59;UBERON:0005743!6.24e-87!86;UBERON:0000955!5.35e-83!69;UBERON:0006238!5.35e-83!69;UBERON:0000073!3.70e-78!94;UBERON:0001016!3.70e-78!94;UBERON:0002020!4.09e-77!34;UBERON:0003528!4.09e-77!34;UBERON:0001893!9.15e-77!34;UBERON:0002780!2.22e-74!41;UBERON:0001890!2.22e-74!41;UBERON:0006240!2.22e-74!41;UBERON:0002791!6.77e-73!33;UBERON:0003080!1.65e-72!42;UBERON:0003075!1.02e-70!86;UBERON:0007284!1.02e-70!86;UBERON:0001869!2.17e-68!32;UBERON:0002346!2.79e-67!90;UBERON:0000956!5.43e-53!25;UBERON:0000203!5.43e-53!25;UBERON:0003056!2.07e-48!61;UBERON:0000033!9.90e-47!123;UBERON:0000153!3.04e-44!129;UBERON:0007811!3.04e-44!129;UBERON:0007023!6.51e-43!115;UBERON:0002619!2.06e-41!22;UBERON:0004121!1.04e-40!169;UBERON:0000924!1.31e-39!173;UBERON:0006601!1.31e-39!173;UBERON:0003076!3.28e-37!15;UBERON:0003057!3.28e-37!15;UBERON:0001950!1.09e-33!20;UBERON:0000025!2.46e-27!194;UBERON:0002308!2.85e-25!9;UBERON:0000125!2.85e-25!9;UBERON:0004733!2.13e-24!12;UBERON:0002028!2.13e-24!12;UBERON:0007277!2.13e-24!12;UBERON:0004732!2.01e-22!13;UBERON:0002298!1.66e-21!8;UBERON:0004111!1.60e-20!241;UBERON:0000200!1.24e-18!6;UBERON:0002420!1.81e-18!9;UBERON:0007245!1.81e-18!9;UBERON:0010009!1.81e-18!9;UBERON:0010011!1.81e-18!9;UBERON:0000454!1.81e-18!9;UBERON:0002680!2.18e-18!9;UBERON:0001895!2.18e-18!9;UBERON:0010092!2.18e-18!9;UBERON:0000477!2.58e-17!286;UBERON:0009663!9.31e-17!7;UBERON:0002240!4.62e-16!3;UBERON:0000349!1.37e-15!5;UBERON:0006331!2.55e-15!3;UBERON:0000988!3.57e-15!3;UBERON:0000064!1.05e-14!219;UBERON:0002771!2.15e-14!3;UBERON:0001871!2.19e-14!7;UBERON:0000483!2.61e-14!309;UBERON:0000119!4.26e-14!312;UBERON:0000475!7.83e-14!365;UBERON:0002148!5.66e-11!2;UBERON:0009662!5.66e-11!2;UBERON:0001954!7.96e-11!2;UBERON:0003022!7.96e-11!2;UBERON:0002421!7.96e-11!2;UBERON:0002600!7.96e-11!2;UBERON:0001875!1.06e-10!2;UBERON:0006514!1.06e-10!2;UBERON:0005174!8.19e-10!5;UBERON:0001137!8.19e-10!5;UBERON:0002021!7.21e-09!5;UBERON:0001872!1.76e-08!5;UBERON:0001896!1.11e-07!3;UBERON:0005290!1.11e-07!3;UBERON:0010096!1.11e-07!3;UBERON:0000062!1.73e-07!511;UBERON:0002037!1.84e-07!6;UBERON:0006215!1.84e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.23e-50;3!UBERON:0005174;1.23e-50;3!UBERON:0001137;1.23e-50;3!UBERON:0002298;2.63e-25;6!UBERON:0001896;6.43e-23;3!UBERON:0005290;6.43e-23;3!UBERON:0002336;8.01e-18;1!UBERON:0011215;8.01e-18;1!UBERON:0001018;8.01e-18;1!UBERON:0002473;8.01e-18;1!UBERON:0005340;8.01e-18;1!UBERON:0003544;8.01e-18;1!UBERON:0005970;8.01e-18;1!UBERON:0002316;8.01e-18;1!UBERON:0001020;8.01e-18;1!UBERON:0002437;8.01e-18;1!UBERON:0004733;5.24e-13;12!UBERON:0002028;5.24e-13;12!UBERON:0001017;5.65e-13;75!UBERON:0000073;1.91e-12;53!UBERON:0002616;1.91e-12;53!UBERON:0001016;4.63e-12;83!UBERON:0004732;4.68e-12;13!UBERON:0002780;4.22e-11;41!UBERON:0001890;4.22e-11;41!UBERON:0000955;3.39e-10;68!UBERON:0001897;1.38e-09;2!UBERON:0001954;1.38e-09;2!UBERON:0002148;1.38e-09;2!UBERON:0005162;1.38e-09;2!UBERON:0000122;1.38e-09;2!UBERON:0006331;1.38e-09;2!UBERON:0009662;1.38e-09;2!UBERON:0003022;1.38e-09;2!UBERON:0002421;1.38e-09;2!UBERON:0010225;1.38e-09;2!UBERON:0002600;1.38e-09;2!UBERON:0001893;4.52e-07;34!UBERON:0000988;8.38e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,8.11e-51,3;UBERON:0005174,8.11e-51,3;UBERON:0001137,8.11e-51,3;UBERON:0003076,1.13e-39,15;UBERON:0003057,1.13e-39,15;UBERON:0001049,4.11e-34,56;UBERON:0005068,4.11e-34,56;UBERON:0006241,4.11e-34,56;UBERON:0007135,4.11e-34,56;UBERON:0001017,8.85e-28,81;UBERON:0002298,2.14e-25,6;UBERON:0001016,5.43e-25,89;UBERON:0003075,3.27e-23,82;UBERON:0007284,3.27e-23,82;UBERON:0001896,5.15e-23,3;UBERON:0005290,5.15e-23,3;UBERON:0010096,5.15e-23,3;UBERON:0002346,4.13e-22,86;UBERON:0000073,6.85e-19,53;UBERON:0002616,6.85e-19,53;UBERON:0000955,2.40e-18,68;UBERON:0006238,2.40e-18,68;UBERON:0010371,3.45e-18,104;UBERON:0002336,6.23e-18,1;UBERON:0011215,6.23e-18,1;UBERON:0001018,6.23e-18,1;UBERON:0002473,6.23e-18,1;UBERON:0005340,6.23e-18,1;UBERON:0003544,6.23e-18,1;UBERON:0005970,6.23e-18,1;UBERON:0002316,6.23e-18,1;UBERON:0001020,6.23e-18,1;UBERON:0002437,6.23e-18,1;UBERON:0010314,3.48e-14,132;UBERON:0004733,4.73e-13,12;UBERON:0002028,4.73e-13,12;UBERON:0007277,4.73e-13,12;UBERON:0004121,8.03e-13,171;UBERON:0000924,8.03e-13,171;UBERON:0006601,8.03e-13,171;UBERON:0004732,4.26e-12,13;UBERON:0007023,4.83e-11,114;UBERON:0002780,8.55e-10,41;UBERON:0001890,8.55e-10,41;UBERON:0003080,8.55e-10,41;UBERON:0006240,8.55e-10,41;UBERON:0005162,1.22e-09,2;UBERON:0000122,1.22e-09,2;UBERON:0011216,1.33e-09,223;UBERON:0002148,1.33e-09,2;UBERON:0006331,1.33e-09,2;UBERON:0009662,1.33e-09,2;UBERON:0001897,1.71e-09,2;UBERON:0010225,1.71e-09,2;UBERON:0000025,1.73e-09,192;UBERON:0001954,2.02e-09,2;UBERON:0003022,2.02e-09,2;UBERON:0002421,2.02e-09,2;UBERON:0002600,2.02e-09,2;UBERON:0001893,8.47e-08,34;UBERON:0003528,8.62e-08,34;UBERON:0002020,8.62e-08,34;UBERON:0004111,2.14e-07,240;UBERON:0000988,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.136874425072884,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0.221158519862449,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48282492557489,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,1.0896272488926,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42211251997706,0.92562821219883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0,1.22021956690538,1.92498849118289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,1.23069818544453,0,0.0691572524642179,0.807378228159255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.271878931907327,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53355240806901,1.48523200163543,4.6492130034174,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.136874425072884,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0.221158519862449,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48282492557489,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,1.0896272488926,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42211251997706,0.92562821219883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.500763722825999,0,1.22021956690538,1.92498849118289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,1.23069818544453,0,0.0691572524642179,0.807378228159255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.271878931907327,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53355240806901,1.48523200163543,4.6492130034174,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p40@GFAP | |||
}} | }} |
Latest revision as of 23:47, 24 September 2015
Short description: | p40@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_40_at_GFAP_5end |
Coexpression cluster: | C291_spinal_substantia_retina_medulla_tongue_skeletal_trachea |
Association with transcript: | -375bp_to_BC127871_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | A1L194 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data