FF:11508-119G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004907 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004907 | ||
|accession_numbers=CAGE;DRX008489;DRR009361;DRZ000786;DRZ002171;DRZ012136;DRZ013521 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037116;DRR041482;DRZ007124 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002599 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000182 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.85!704.63!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.07!142.39!FOXF1;;chr5:134369905..134369972,-!p1@PITX1!1.89!115.08!PITX1;;chr4:174451370..174451387,-!p1@HAND2!1.68!47.30!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.68!46.81!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!202.86!CREB3L1;;chr19:46801639..46801699,+!p1@HIF3A!1.57!36.08!HIF3A;;chr6:1389789..1389821,+!p1@FOXF2!1.55!46.81!FOXF2;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.37!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!1.35!27.80!BCL3;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.21!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.07!HAND2;;chr5:92918919..92918942,+!p1@NR2F1!1.21!66.81!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.81!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.86!TWIST2;;chr14:29235961..29236008,+!p1@FOXG1!1.15!13.17!FOXG1;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.97!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!1.06!23.41!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.43!C11orf9;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.51!GLI2;;chr15:76629123..76629151,+!p1@ISL2!0.99!9.75!ISL2;;chr8:48650715..48650735,-!p1@CEBPD!0.95!1039.64!CEBPD;;chr20:50721803..50721857,-!p2@ZFP64!0.95!12.68!ZFP64;;chr17:46622114..46622138,-!p4@HOXB2!0.95!12.19!HOXB2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.73!TBX2;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.71!HIC1;;chr14:29236269..29236285,+!p3@FOXG1!0.92!7.31!FOXG1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.37!MYBL2;;chr9:132427972..132428056,+!p1@PRRX2!0.90!9.27!PRRX2;;chr1:203055129..203055147,-!p1@MYOG!0.89!6.83!MYOG;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.83!FOXF2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.19!ZFP106;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.29!SMAD3;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.31!NR1H3;;chr4:111558135..111558198,-!p2@PITX2!0.87!6.34!PITX2;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.34!HIF3A;;chr16:8962853..8962878,-!p1@CARHSP1!0.86!387.67!CARHSP1;;chr2:19558373..19558392,-!p1@OSR1!0.86!18.04!OSR1;;chr17:59477197..59477212,+!p2@TBX2!0.86!11.22!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.85!6.83!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!0.84!10.73!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.85!CREB3L1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.14!TOX2;;chr7:42276787..42276815,-!p1@GLI3!0.81!15.60!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.63!TWIST1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.80!15.60!ZC3H7B;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.68!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.80!7.80!ZBTB16;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.36!KDM5D;;chr5:92919100..92919135,+!p3@NR2F1!0.79!6.34!NR2F1;;chr20:42295745..42295765,+!p1@MYBL2!0.78!90.21!MYBL2;;chr7:42276822..42276895,-!p2@GLI3!0.77!15.60!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.77!14.14!HOXB2;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.88!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.43!TOX2;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.88!SMAD3;;chr4:111544219..111544240,-!p1@PITX2!0.73!4.39!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!42.91!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.72!28.77!FOXM1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!528.59!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.84!AEBP1;;chr11:65686952..65686975,+!p5@DRAP1!0.71!25.36!DRAP1;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.78!RCOR2;;chr19:45261550..45261641,+!p6@BCL3!0.71!7.31!BCL3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.83!MSC;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr2:242576431..242576458,-!p3@THAP4!0.70!10.73!THAP4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.70!5.36!ZC3H7B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.70!4.39!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.69!105.82!ZNF703;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.49!ZNF503;;chr12:7079780..7079791,-!p2@PHB2!0.69!22.92!PHB2;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.83!GLI2;;chr2:85981222..85981259,+!p2@ATOH8!0.69!6.83!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.69!3.90!HAND2;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.90!FOXF2;;chr16:86612046..86612065,+!p3@FOXL1!0.69!3.90!FOXL1;;chr20:306489..306564,+!p1@SOX12!0.68!46.81!SOX12;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.51!MEIS2;;chr16:8962202..8962222,-!p3@CARHSP1!0.68!7.31!CARHSP1;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.83!FOXD1;;chr8:72756267..72756296,-!p4@MSC!0.68!5.85!MSC;;chr15:37392094..37392116,-!p6@MEIS2!0.68!4.88!MEIS2;;chr1:8938766..8938774,-!p2@ENO1!0.67!290.63!ENO1;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.22!SALL2;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.78!SMARCD3;;chr8:60031619..60031676,-!p1@TOX!0.67!8.78!TOX;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.85!HOXB4;;chr6:34204921..34204939,+!p3@HMGA1!0.66!125.81!HMGA1;;chr10:77161533..77161546,-!p2@ZNF503!0.66!16.09!ZNF503;;chr16:86600426..86600441,+!p1@FOXC2!0.66!9.75!FOXC2;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.47!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.65!6.83!HLX;;chr19:13134772..13134822,+!p2@NFIX!0.65!5.36!NFIX;;chr2:121493717..121493755,+!p3@GLI2!0.65!3.90!GLI2;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.84!SMAD3;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.88!BATF2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.41!HOXC4;;chr12:56414795..56414836,+!p4@IKZF4!0.64!3.41!IKZF4;;chr15:67418177..67418204,+!p9@SMAD3!0.64!3.41!SMAD3;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.41!HOXA4;;chr2:85981271..85981289,+!p9@ATOH8!0.64!3.41!ATOH8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr17:3571887..3571918,-!p2@TAX1BP3!0.63!42.91!TAX1BP3;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.63!HHEX;;chr1:8483878..8483907,-!p4@RERE!0.63!14.63!RERE;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.75!ZFPM2;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.39!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr1:23885981..23886002,-!p1@ID3!0.62!666.11!ID3;;chr19:3366570..3366619,+!p1@NFIC!0.62!121.91!NFIC;;chr8:49833978..49833996,-!p1@SNAI2!0.62!77.53!SNAI2;;chr19:3359591..3359667,+!p2@NFIC!0.62!43.40!NFIC;;chr16:29817841..29817865,+!p1@MAZ!0.61!79.00!MAZ;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.58!DRAP1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.78!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.61!5.36!RARA;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.36!ETV4;;chr14:75894714..75894733,+!p1@JDP2!0.60!103.38!JDP2;;chr5:178368186..178368238,+!p1@ZNF454!0.60!5.85!ZNF454;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.85!ZNF804A;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr11:113930291..113930339,+!p2@ZBTB16!0.60!5.36!ZBTB16;;chr1:221052700..221052730,+!p5@HLX!0.60!4.88!HLX;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.90!DPF1;;chr8:128748308..128748324,+!p2@MYC!0.59!98.50!MYC;;chr16:4322832..4322907,-!p1@TFAP4!0.59!26.33!TFAP4;;chr5:92918894..92918912,+!p2@NR2F1!0.59!11.22!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.36!TCF12;;chr5:134369973..134369984,-!p3@PITX1!0.59!2.93!PITX1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.93!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.93!HOXA2;;chr11:125034605..125034636,+!p2@PKNOX2!0.59!2.93!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.93!PKNOX2;;chr2:5832508..5832524,+!p1@SOX11!0.59!2.93!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.93!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.92!MXD3;;chr8:49833948..49833973,-!p2@SNAI2!0.58!21.46!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!0.58!17.07!HMGA1;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.60!THAP8;;chr17:38498594..38498661,+!p2@RARA!0.58!11.22!RARA;;chr19:56152332..56152347,+!p4@ZNF580!0.58!7.31!ZNF580;;chrX:48900782..48900793,-!p3@TFE3!0.58!5.85!TFE3;;chr8:60031762..60031803,-!p3@TOX!0.58!4.39!TOX;;chr19:6424813..6424835,-!p1@KHSRP!0.57!211.63!KHSRP;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.77!TEAD2;;chr12:3069037..3069119,+!p2@TEAD4!0.57!11.22!TEAD4;;chr19:926055..926068,+!p2@ARID3A!0.57!6.83!ARID3A;;chr1:164528616..164528660,+!p5@PBX1!0.57!6.34!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.57!5.85!NR2F2;;chr11:8102749..8102769,+!p2@TUB!0.57!5.85!TUB;;chr12:122516678..122516687,+!p3@MLXIP!0.57!5.85!MLXIP;;chr17:42295777..42295816,-!p7@UBTF!0.57!3.41!UBTF;;chr22:41697520..41697613,+!p1@ZC3H7B!0.56!185.79!ZC3H7B;;chr9:35732647..35732678,+!p2@CREB3!0.56!18.04!CREB3;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.19!SIX1;;chr12:54447599..54447630,+!p3@HOXC4!0.56!3.41!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.41!TBX18;;chr2:46524537..46524553,+!p1@EPAS1!0.55!319.89!EPAS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.55!233.09!TAX1BP3;;chr19:6424783..6424802,-!p2@KHSRP!0.55!65.83!KHSRP;;chr6:41514078..41514158,+!p1@FOXP4!0.55!28.77!FOXP4;;chr8:48650697..48650708,-!p2@CEBPD!0.55!24.38!CEBPD;;chr16:29818160..29818188,+!p6@MAZ!0.55!14.63!MAZ;;chr8:60031809..60031835,-!p4@TOX!0.55!3.41!TOX;;chr1:8938736..8938756,-!p1@ENO1!0.54!3507.06!ENO1;;chrX:48900871..48900890,-!p1@TFE3!0.54!162.87!TFE3;;chr19:13106214..13106382,+!p1@NFIX!0.54!72.66!NFIX;;chr17:17740330..17740349,-!p3@SREBF1!0.54!20.48!SREBF1;;chr17:17726907..17726958,-!p2@SREBF1!0.54!19.02!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.54!3.90!AR;;chr9:132427883..132427951,+!p2@PRRX2!0.54!2.44!PRRX2;;chr15:80843484..80843499,+!p5@ARNT2!0.54!2.44!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.44!BNC1;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.54!2.44!ZNF469;;chr6:35464729..35464738,-!p3@TEAD3!0.54!2.44!TEAD3;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.44!FOSL1;;chr19:50542543..50542548,+!p2@ZNF473!0.54!2.44!ZNF473;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.54!2.44!PEG3;;chr2:66666432..66666462,+!p7@MEIS1!0.54!2.44!MEIS1;;chr2:85980903..85980914,+!p11@ATOH8!0.54!2.44!ATOH8;;chr15:96873921..96873946,+!p1@NR2F2!0.53!86.80!NR2F2;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.47!CREB3;;chr6:31126291..31126399,+!p1@TCF19!0.53!28.77!TCF19;;chr15:96873984..96873999,+!p3@NR2F2!0.53!21.94!NR2F2;;chr12:54772960..54773015,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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.85!704.63!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.07!142.39!FOXF1;;chr5:134369905..134369972,-!p1@PITX1!1.89!115.08!PITX1;;chr4:174451370..174451387,-!p1@HAND2!1.68!47.30!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.68!46.81!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!202.86!CREB3L1;;chr19:46801639..46801699,+!p1@HIF3A!1.57!36.08!HIF3A;;chr6:1389789..1389821,+!p1@FOXF2!1.55!46.81!FOXF2;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.37!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!1.35!27.80!BCL3;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.21!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.07!HAND2;;chr5:92918919..92918942,+!p1@NR2F1!1.21!66.81!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.81!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.86!TWIST2;;chr14:29235961..29236008,+!p1@FOXG1!1.15!13.17!FOXG1;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.97!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!1.06!23.41!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.43!C11orf9;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.51!GLI2;;chr15:76629123..76629151,+!p1@ISL2!0.99!9.75!ISL2;;chr8:48650715..48650735,-!p1@CEBPD!0.95!1039.64!CEBPD;;chr20:50721803..50721857,-!p2@ZFP64!0.95!12.68!ZFP64;;chr17:46622114..46622138,-!p4@HOXB2!0.95!12.19!HOXB2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.73!TBX2;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.71!HIC1;;chr14:29236269..29236285,+!p3@FOXG1!0.92!7.31!FOXG1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.37!MYBL2;;chr9:132427972..132428056,+!p1@PRRX2!0.90!9.27!PRRX2;;chr1:203055129..203055147,-!p1@MYOG!0.89!6.83!MYOG;;chr6:1389824..1389840,+!p3@FOXF2!0.89!6.83!FOXF2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.19!ZFP106;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.29!SMAD3;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.31!NR1H3;;chr4:111558135..111558198,-!p2@PITX2!0.87!6.34!PITX2;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.34!HIF3A;;chr16:8962853..8962878,-!p1@CARHSP1!0.86!387.67!CARHSP1;;chr2:19558373..19558392,-!p1@OSR1!0.86!18.04!OSR1;;chr17:59477197..59477212,+!p2@TBX2!0.86!11.22!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.85!6.83!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!0.84!10.73!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.85!CREB3L1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.14!TOX2;;chr7:42276787..42276815,-!p1@GLI3!0.81!15.60!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.63!TWIST1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.80!15.60!ZC3H7B;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.68!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.80!7.80!ZBTB16;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.36!KDM5D;;chr5:92919100..92919135,+!p3@NR2F1!0.79!6.34!NR2F1;;chr20:42295745..42295765,+!p1@MYBL2!0.78!90.21!MYBL2;;chr7:42276822..42276895,-!p2@GLI3!0.77!15.60!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.77!14.14!HOXB2;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.88!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.74!22.43!TOX2;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.88!SMAD3;;chr4:111544219..111544240,-!p1@PITX2!0.73!4.39!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!42.91!NR2F2;;chr12:2986206..2986258,-!p2@FOXM1!0.72!28.77!FOXM1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!528.59!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.84!AEBP1;;chr11:65686952..65686975,+!p5@DRAP1!0.71!25.36!DRAP1;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.78!RCOR2;;chr19:45261550..45261641,+!p6@BCL3!0.71!7.31!BCL3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.83!MSC;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr2:242576431..242576458,-!p3@THAP4!0.70!10.73!THAP4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.70!5.36!ZC3H7B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.70!4.39!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.69!105.82!ZNF703;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.49!ZNF503;;chr12:7079780..7079791,-!p2@PHB2!0.69!22.92!PHB2;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.83!GLI2;;chr2:85981222..85981259,+!p2@ATOH8!0.69!6.83!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.69!3.90!HAND2;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.90!FOXF2;;chr16:86612046..86612065,+!p3@FOXL1!0.69!3.90!FOXL1;;chr20:306489..306564,+!p1@SOX12!0.68!46.81!SOX12;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.51!MEIS2;;chr16:8962202..8962222,-!p3@CARHSP1!0.68!7.31!CARHSP1;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.83!FOXD1;;chr8:72756267..72756296,-!p4@MSC!0.68!5.85!MSC;;chr15:37392094..37392116,-!p6@MEIS2!0.68!4.88!MEIS2;;chr1:8938766..8938774,-!p2@ENO1!0.67!290.63!ENO1;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.22!SALL2;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.78!SMARCD3;;chr8:60031619..60031676,-!p1@TOX!0.67!8.78!TOX;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.85!HOXB4;;chr6:34204921..34204939,+!p3@HMGA1!0.66!125.81!HMGA1;;chr10:77161533..77161546,-!p2@ZNF503!0.66!16.09!ZNF503;;chr16:86600426..86600441,+!p1@FOXC2!0.66!9.75!FOXC2;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.47!FOXM1;;chr1:221052776..221052799,+!p1@HLX!0.65!6.83!HLX;;chr19:13134772..13134822,+!p2@NFIX!0.65!5.36!NFIX;;chr2:121493717..121493755,+!p3@GLI2!0.65!3.90!GLI2;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.84!SMAD3;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.88!BATF2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.41!HOXC4;;chr12:56414795..56414836,+!p4@IKZF4!0.64!3.41!IKZF4;;chr15:67418177..67418204,+!p9@SMAD3!0.64!3.41!SMAD3;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.41!HOXA4;;chr2:85981271..85981289,+!p9@ATOH8!0.64!3.41!ATOH8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr17:3571887..3571918,-!p2@TAX1BP3!0.63!42.91!TAX1BP3;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.63!HHEX;;chr1:8483878..8483907,-!p4@RERE!0.63!14.63!RERE;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.75!ZFPM2;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.39!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr1:23885981..23886002,-!p1@ID3!0.62!666.11!ID3;;chr19:3366570..3366619,+!p1@NFIC!0.62!121.91!NFIC;;chr8:49833978..49833996,-!p1@SNAI2!0.62!77.53!SNAI2;;chr19:3359591..3359667,+!p2@NFIC!0.62!43.40!NFIC;;chr16:29817841..29817865,+!p1@MAZ!0.61!79.00!MAZ;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.58!DRAP1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.78!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.61!5.36!RARA;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.36!ETV4;;chr14:75894714..75894733,+!p1@JDP2!0.60!103.38!JDP2;;chr5:178368186..178368238,+!p1@ZNF454!0.60!5.85!ZNF454;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.85!ZNF804A;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr11:113930291..113930339,+!p2@ZBTB16!0.60!5.36!ZBTB16;;chr1:221052700..221052730,+!p5@HLX!0.60!4.88!HLX;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.90!DPF1;;chr8:128748308..128748324,+!p2@MYC!0.59!98.50!MYC;;chr16:4322832..4322907,-!p1@TFAP4!0.59!26.33!TFAP4;;chr5:92918894..92918912,+!p2@NR2F1!0.59!11.22!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.36!TCF12;;chr5:134369973..134369984,-!p3@PITX1!0.59!2.93!PITX1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.93!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.93!HOXA2;;chr11:125034605..125034636,+!p2@PKNOX2!0.59!2.93!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.93!PKNOX2;;chr2:5832508..5832524,+!p1@SOX11!0.59!2.93!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.93!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.92!MXD3;;chr8:49833948..49833973,-!p2@SNAI2!0.58!21.46!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!0.58!17.07!HMGA1;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.60!THAP8;;chr17:38498594..38498661,+!p2@RARA!0.58!11.22!RARA;;chr19:56152332..56152347,+!p4@ZNF580!0.58!7.31!ZNF580;;chrX:48900782..48900793,-!p3@TFE3!0.58!5.85!TFE3;;chr8:60031762..60031803,-!p3@TOX!0.58!4.39!TOX;;chr19:6424813..6424835,-!p1@KHSRP!0.57!211.63!KHSRP;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.77!TEAD2;;chr12:3069037..3069119,+!p2@TEAD4!0.57!11.22!TEAD4;;chr19:926055..926068,+!p2@ARID3A!0.57!6.83!ARID3A;;chr1:164528616..164528660,+!p5@PBX1!0.57!6.34!PBX1;;chr15:96874145..96874166,+!p7@NR2F2!0.57!5.85!NR2F2;;chr11:8102749..8102769,+!p2@TUB!0.57!5.85!TUB;;chr12:122516678..122516687,+!p3@MLXIP!0.57!5.85!MLXIP;;chr17:42295777..42295816,-!p7@UBTF!0.57!3.41!UBTF;;chr22:41697520..41697613,+!p1@ZC3H7B!0.56!185.79!ZC3H7B;;chr9:35732647..35732678,+!p2@CREB3!0.56!18.04!CREB3;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.19!SIX1;;chr12:54447599..54447630,+!p3@HOXC4!0.56!3.41!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.41!TBX18;;chr2:46524537..46524553,+!p1@EPAS1!0.55!319.89!EPAS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.55!233.09!TAX1BP3;;chr19:6424783..6424802,-!p2@KHSRP!0.55!65.83!KHSRP;;chr6:41514078..41514158,+!p1@FOXP4!0.55!28.77!FOXP4;;chr8:48650697..48650708,-!p2@CEBPD!0.55!24.38!CEBPD;;chr16:29818160..29818188,+!p6@MAZ!0.55!14.63!MAZ;;chr8:60031809..60031835,-!p4@TOX!0.55!3.41!TOX;;chr1:8938736..8938756,-!p1@ENO1!0.54!3507.06!ENO1;;chrX:48900871..48900890,-!p1@TFE3!0.54!162.87!TFE3;;chr19:13106214..13106382,+!p1@NFIX!0.54!72.66!NFIX;;chr17:17740330..17740349,-!p3@SREBF1!0.54!20.48!SREBF1;;chr17:17726907..17726958,-!p2@SREBF1!0.54!19.02!SREBF1;;chrX:66763856..66763896,+!p1@AR!0.54!3.90!AR;;chr9:132427883..132427951,+!p2@PRRX2!0.54!2.44!PRRX2;;chr15:80843484..80843499,+!p5@ARNT2!0.54!2.44!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.44!BNC1;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.54!2.44!ZNF469;;chr6:35464729..35464738,-!p3@TEAD3!0.54!2.44!TEAD3;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.44!FOSL1;;chr19:50542543..50542548,+!p2@ZNF473!0.54!2.44!ZNF473;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.54!2.44!PEG3;;chr2:66666432..66666462,+!p7@MEIS1!0.54!2.44!MEIS1;;chr2:85980903..85980914,+!p11@ATOH8!0.54!2.44!ATOH8;;chr15:96873921..96873946,+!p1@NR2F2!0.53!86.80!NR2F2;;chr9:35732592..35732640,+!p1@CREB3!0.53!40.47!CREB3;;chr6:31126291..31126399,+!p1@TCF19!0.53!28.77!TCF19;;chr15:96873984..96873999,+!p3@NR2F2!0.53!21.94!NR2F2;;chr12:54772960..54773015,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001043;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11508-119G5 | |id=FF:11508-119G5 | ||
|is_a=EFO:0002091;;FF:0000182 | |is_a=EFO:0002091;;FF:0000182 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11324 | |||
|library_id_phase_based=2:CNhs11324 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11508 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TAGCTT.11508 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11508 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TAGCTT.11508 | |||
|name=Smooth Muscle Cells - Esophageal, donor1 | |name=Smooth Muscle Cells - Esophageal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11324,LSID768,release014,COMPLETED | |profile_hcage=CNhs11324,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2715 | |rna_catalog_number=SC2715 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=119G5 | |rna_tube_id=119G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187 | |top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11508-119G5;search_select_hide=table117:FF:11508-119G5 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Esophageal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11324 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11324
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11324
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.925 |
| 10 | 10 | 0.615 |
| 100 | 100 | 0.13 |
| 101 | 101 | 0.288 |
| 102 | 102 | 0.62 |
| 103 | 103 | 0.897 |
| 104 | 104 | 0.127 |
| 105 | 105 | 0.029 |
| 106 | 106 | 0.118 |
| 107 | 107 | 0.0328 |
| 108 | 108 | 0.681 |
| 109 | 109 | 0.0569 |
| 11 | 11 | 0.0414 |
| 110 | 110 | 0.0978 |
| 111 | 111 | 0.725 |
| 112 | 112 | 0.626 |
| 113 | 113 | 0.93 |
| 114 | 114 | 0.948 |
| 115 | 115 | 0.929 |
| 116 | 116 | 0.0473 |
| 117 | 117 | 0.828 |
| 118 | 118 | 0.603 |
| 119 | 119 | 0.854 |
| 12 | 12 | 0.371 |
| 120 | 120 | 0.523 |
| 121 | 121 | 0.266 |
| 122 | 122 | 0.789 |
| 123 | 123 | 0.0465 |
| 124 | 124 | 0.406 |
| 125 | 125 | 0.284 |
| 126 | 126 | 0.531 |
| 127 | 127 | 0.866 |
| 128 | 128 | 0.346 |
| 129 | 129 | 0.808 |
| 13 | 13 | 0.289 |
| 130 | 130 | 0.177 |
| 131 | 131 | 0.683 |
| 132 | 132 | 0.548 |
| 133 | 133 | 0.264 |
| 134 | 134 | 0.161 |
| 135 | 135 | 0.285 |
| 136 | 136 | 0.842 |
| 137 | 137 | 0.073 |
| 138 | 138 | 0.0357 |
| 139 | 139 | 0.715 |
| 14 | 14 | 0.906 |
| 140 | 140 | 0.567 |
| 141 | 141 | 0.563 |
| 142 | 142 | 0.11 |
| 143 | 143 | 0.376 |
| 144 | 144 | 0.441 |
| 145 | 145 | 0.284 |
| 146 | 146 | 0.254 |
| 147 | 147 | 0.379 |
| 148 | 148 | 0.379 |
| 149 | 149 | 0.317 |
| 15 | 15 | 0.673 |
| 150 | 150 | 0.496 |
| 151 | 151 | 0.539 |
| 152 | 152 | 0.108 |
| 153 | 153 | 0.069 |
| 154 | 154 | 0.212 |
| 155 | 155 | 0.395 |
| 156 | 156 | 0.473 |
| 157 | 157 | 0.282 |
| 158 | 158 | 0.18 |
| 159 | 159 | 0.886 |
| 16 | 16 | 0.168 |
| 160 | 160 | 0.0544 |
| 161 | 161 | 0.244 |
| 162 | 162 | 0.0647 |
| 163 | 163 | 0.954 |
| 164 | 164 | 0.637 |
| 165 | 165 | 0.0801 |
| 166 | 166 | 0.931 |
| 167 | 167 | 0.149 |
| 168 | 168 | 0.618 |
| 169 | 169 | 0.0884 |
| 17 | 17 | 0.158 |
| 18 | 18 | 0.242 |
| 19 | 19 | 0.0968 |
| 2 | 2 | 0.451 |
| 20 | 20 | 0.56 |
| 21 | 21 | 0.883 |
| 22 | 22 | 0.105 |
| 23 | 23 | 0.585 |
| 24 | 24 | 0.54 |
| 25 | 25 | 0.565 |
| 26 | 26 | 0.00642 |
| 27 | 27 | 0.476 |
| 28 | 28 | 0.146 |
| 29 | 29 | 0.986 |
| 3 | 3 | 0.78 |
| 30 | 30 | 0.127 |
| 31 | 31 | 0.357 |
| 32 | 32 | 1.95543e-6 |
| 33 | 33 | 0.436 |
| 34 | 34 | 0.0913 |
| 35 | 35 | 0.575 |
| 36 | 36 | 0.661 |
| 37 | 37 | 0.593 |
| 38 | 38 | 0.438 |
| 39 | 39 | 0.484 |
| 4 | 4 | 0.438 |
| 40 | 40 | 0.00547 |
| 41 | 41 | 0.265 |
| 42 | 42 | 0.568 |
| 43 | 43 | 0.274 |
| 44 | 44 | 0.65 |
| 45 | 45 | 0.344 |
| 46 | 46 | 0.177 |
| 47 | 47 | 0.23 |
| 48 | 48 | 0.108 |
| 49 | 49 | 0.177 |
| 5 | 5 | 0.734 |
| 50 | 50 | 0.32 |
| 51 | 51 | 0.328 |
| 52 | 52 | 0.521 |
| 53 | 53 | 0.673 |
| 54 | 54 | 0.636 |
| 55 | 55 | 0.606 |
| 56 | 56 | 0.184 |
| 57 | 57 | 0.514 |
| 58 | 58 | 0.342 |
| 59 | 59 | 0.052 |
| 6 | 6 | 0.375 |
| 60 | 60 | 0.54 |
| 61 | 61 | 0.652 |
| 62 | 62 | 0.497 |
| 63 | 63 | 0.317 |
| 64 | 64 | 0.107 |
| 65 | 65 | 0.0615 |
| 66 | 66 | 0.203 |
| 67 | 67 | 0.948 |
| 68 | 68 | 0.0603 |
| 69 | 69 | 0.15 |
| 7 | 7 | 0.728 |
| 70 | 70 | 0.861 |
| 71 | 71 | 0.0728 |
| 72 | 72 | 0.584 |
| 73 | 73 | 0.0642 |
| 74 | 74 | 0.745 |
| 75 | 75 | 0.696 |
| 76 | 76 | 0.633 |
| 77 | 77 | 0.0306 |
| 78 | 78 | 0.576 |
| 79 | 79 | 0.378 |
| 8 | 8 | 0.0288 |
| 80 | 80 | 0.827 |
| 81 | 81 | 0.852 |
| 82 | 82 | 0.692 |
| 83 | 83 | 0.857 |
| 84 | 84 | 0.377 |
| 85 | 85 | 0.373 |
| 86 | 86 | 0.905 |
| 87 | 87 | 0.27 |
| 88 | 88 | 0.18 |
| 89 | 89 | 0.291 |
| 9 | 9 | 0.176 |
| 90 | 90 | 0.0254 |
| 91 | 91 | 0.359 |
| 92 | 92 | 0.426 |
| 93 | 93 | 0.538 |
| 94 | 94 | 0.203 |
| 95 | 95 | 0.343 |
| 96 | 96 | 0.953 |
| 97 | 97 | 0.545 |
| 98 | 98 | 0.629 |
| 99 | 99 | 6.57564e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11324
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000182 human esophageal smooth muscle cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002599 (smooth muscle cell of the esophagus)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000182 (human esophageal smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
