FF:11508-119G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004907 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004907 | ||
|accession_numbers=CAGE;DRX008489;DRR009361;DRZ000786;DRZ002171;DRZ012136;DRZ013521 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037116;DRR041482;DRZ007124 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002599 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000182 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Esophageal%252c%2520donor1.CNhs11324.11508-119G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11508-119G5 | |id=FF:11508-119G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000182 | ||
|is_obsolete= | |||
|library_id=CNhs11324 | |||
|library_id_phase_based=2:CNhs11324 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11508 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TAGCTT.11508 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11508 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TAGCTT.11508 | |||
|name=Smooth Muscle Cells - Esophageal, donor1 | |name=Smooth Muscle Cells - Esophageal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11324,LSID768,release014,COMPLETED | |profile_hcage=CNhs11324,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0121779893815873,0,0.114084861190288,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191730091195457,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0251705940316911,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.295625913345657,0,0.022667727460435,0,-0.0969923612426051,0,0,0.0751523922548764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00299210874942135,0,0,0,0,-0.0124223013307456,0.056966188177842,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.157514152002983,0.278429991730215,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.119842221252402,0.0289808769445015,0,0,-0.044066857173379,0,0.172496019467973,0,0,0,0,0,0,0,0.167506046393093,0,0.122083467878658,0,0,0,0,0,-0.132976211430434,0,0.0214654355423911,-0.0683442610773682,0,0,0,0,0.174536507340709,0,0.174746429551917,-0.0827201683234173,0.172496019467973,0.325085293660074,-0.055712496781182,0,0,0,-0.140619136966335,0.33295125286687,0,0,-0.0355318420178872,-0.181349618560659,0,0,0.145282600195787,0,0.0432161796016843,0.207723848976841,0,-0.243008711383188,0,0,0,0,0,0,0,0,0.172496019467973,0,0,0.176567499585378,-0.326988596678969,0,0,0.172496019467973,0,0.0771176642850047,0,0,0.220642284047843,0.380748287218052,0.0654414236142508,0.549589352254598,0,0.167511037284072,0.0455570595916489,0.117706387048604,-0.0124223013307456,0.54288904830381,0.279919044744138,0.111559023729859,0.236198349971899,-0.0959817314390629,0.00605906674332175,0.407327618806941,0.104632620792604,0.461224648241762,0.205714711730514,0,0,0,-0.592647767769456,0,0,-0.0202139501827885,0.0729829927463855,0.449424393067827,0.22727544225808,0.133668603349088,0.0268106191825892,0.909051230557151,0.187340397378304,0,0.437541719026146,0.0319797173112328,0,0.00119442419153259,-0.00375645176300615,-0.0168053841828039,0.374397534061663,0,-0.311481442343007,-0.0683442610773682,0,0.182250627710839,0.404027495617448,0,0.134680753934972,0.0151512091329979,0,0,0,0,0,0.155653478716227,0.105284707244732,0.0627703517901125,0,0.100791082883732,-0.225540318076679,0.134107378218874,0,-0.199167823123228,-0.0296747421428321,-0.156244262640838,0.153306021660994,0,0.148291687263935,-0.401035955602456,0.0478320234015954,0.113932376355684,-0.0584468268118252,-0.339024940391929,-0.238479887456341,-0.0544568171794981,-0.493313951444569,0.172496019467973,2.06838916043103,0,-0.28961631051397,-0.507002112153551,0.0177863678585366,0.102529841306317,0,-0.16758824565065,0,-0.614181771108371,0,0.313965398759342,0.325217255932714,-0.266793355112713,-0.630041523138859,0,0.099998585127355,0.456876745142981,0,0.263942808575441,0,0,-0.150367083334639,-0.0074050688376337,-0.211650427864589,0.00882349999363385,0,0.0755708490162976,0,0,-0.171383433850575,-0.235476037764389,0,0.469446420173989,0.122281386301514,0.231576268129061,0.353929690859051,0,0,0.0857839625221858,0,0.172496019467973,0.259722943587924,0.284847192730614,-0.0834561422112117,0.5824659678376,0.0331235845169235,0.0391901472185731,0,0,-0.177527765965176,0,0.0490213920033495,0,0,0.166095250947716,0.274818880393669,0,0,0,0,0,0,0,0,0,0,0,-0.598202854225234,-0.0592074168707907,0,0.231780915602926,0,0,0,0.769106722924519,0,0,0,0,-0.280463661526755,0.0237285802692419,-0.12301741567642,0,0,0,0,-0.215723402553475,0.188210431289078,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.29441648630067,0,0,0,-0.27695440160179,0,0,0,0,-0.23821330534708,0,0,0.0128466768885184,0,0.265185684375542,0.0909141399211319,0,0.0750166701730755,0.903438105298483,0.598714167563293,0,0,0.0342787815557697,0,0,-0.644497328249446,0,0,0.0862480097339865,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.249948415746826,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.137696530181722,0,0,0,0,0,0,0,0,-0.298929920195269,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.114084861190288,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.520581205475739,0,0,0,0,0,0,0,-0.102337278738117,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.0121779893815873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477093735382394,0.147720440687751,0.172496019467973,-0.0568589461625992,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.142697038182184,0.28248871151186,0.0184585287740612,0,0,0,0.0934273841903735,0.295625913345657,0,0.115112570504511,0,0.105718632049072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191730091195457,0,0,0,0,0,0,0,0,0,0,0.0862480097339865,0.0862480097339865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0405902101890703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644718973435905,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0881193872379462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.122304982031054,0,0,0,0,0,0,0,0,0,0,0,0,0.111175840317847,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172496019467973,0.278429991730215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.119773693960406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2715 | |rna_catalog_number=SC2715 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119G5 | |rna_tube_id=119G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.36407440721986e-205!GO:0005737;cytoplasm;1.72779657095268e-186!GO:0043226;organelle;3.3070816901264e-164!GO:0043229;intracellular organelle;5.19410527501087e-164!GO:0043231;intracellular membrane-bound organelle;3.87575392042858e-162!GO:0043227;membrane-bound organelle;5.30074512857234e-162!GO:0044444;cytoplasmic part;2.10730131913683e-134!GO:0044422;organelle part;2.85739836461437e-134!GO:0044446;intracellular organelle part;8.17950135682456e-133!GO:0032991;macromolecular complex;1.40491753926371e-84!GO:0044237;cellular metabolic process;1.67678825780196e-76!GO:0030529;ribonucleoprotein complex;2.95170295012877e-76!GO:0044238;primary metabolic process;7.43640013227602e-76!GO:0005739;mitochondrion;5.33235571355815e-73!GO:0005515;protein binding;1.26528988380131e-69!GO:0043233;organelle lumen;5.01574253978958e-66!GO:0031974;membrane-enclosed lumen;5.01574253978958e-66!GO:0043170;macromolecule metabolic process;5.93485958345724e-65!GO:0044428;nuclear part;1.12574363425917e-57!GO:0003723;RNA binding;3.51061930719522e-54!GO:0005634;nucleus;4.30709457573488e-54!GO:0005840;ribosome;2.60582594709877e-52!GO:0031090;organelle membrane;7.65473705648646e-50!GO:0044429;mitochondrial part;3.24434609557428e-49!GO:0003735;structural constituent of ribosome;4.82585490627056e-47!GO:0009058;biosynthetic process;1.18342538130207e-46!GO:0006412;translation;1.47908219845215e-45!GO:0019538;protein metabolic process;5.20832390768144e-44!GO:0016043;cellular component organization and biogenesis;3.17866554562492e-43!GO:0044249;cellular biosynthetic process;1.04821566828231e-42!GO:0043234;protein complex;3.68130448541347e-42!GO:0033279;ribosomal subunit;1.83564433292211e-40!GO:0031967;organelle envelope;3.69915453790319e-40!GO:0031975;envelope;8.54666169007901e-40!GO:0044260;cellular macromolecule metabolic process;3.53801665378869e-39!GO:0044267;cellular protein metabolic process;4.31745086538901e-38!GO:0009059;macromolecule biosynthetic process;1.55616617337951e-37!GO:0006396;RNA processing;9.10755287311733e-37!GO:0031981;nuclear lumen;2.43609040955515e-36!GO:0005829;cytosol;3.17762479136237e-36!GO:0006996;organelle organization and biogenesis;9.5923151946687e-34!GO:0015031;protein transport;8.16283388467109e-33!GO:0005740;mitochondrial envelope;9.77857696023829e-33!GO:0033036;macromolecule localization;5.83345877710172e-32!GO:0043283;biopolymer metabolic process;1.90137741809226e-31!GO:0031966;mitochondrial membrane;9.78446821248657e-31!GO:0043228;non-membrane-bound organelle;1.33551650273296e-30!GO:0043232;intracellular non-membrane-bound organelle;1.33551650273296e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.90652439854747e-30!GO:0008104;protein localization;1.55236634520727e-29!GO:0045184;establishment of protein localization;1.97946966142015e-29!GO:0019866;organelle inner membrane;3.79904992580101e-29!GO:0065003;macromolecular complex assembly;3.60755348397377e-28!GO:0005743;mitochondrial inner membrane;4.73520157061593e-28!GO:0016071;mRNA metabolic process;6.40408692680091e-28!GO:0006259;DNA metabolic process;1.02586683787224e-27!GO:0046907;intracellular transport;1.4299179435415e-27!GO:0010467;gene expression;2.00759822769467e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.30125783455755e-27!GO:0022607;cellular component assembly;6.08828584780406e-26!GO:0008380;RNA splicing;1.77405636909436e-25!GO:0044445;cytosolic part;5.38520943318536e-24!GO:0006397;mRNA processing;1.76993818681492e-23!GO:0006886;intracellular protein transport;1.39216210802682e-22!GO:0005654;nucleoplasm;9.39975404049799e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.13223758481837e-21!GO:0015934;large ribosomal subunit;3.94980289816597e-21!GO:0007049;cell cycle;4.83489070245824e-21!GO:0005783;endoplasmic reticulum;1.32117120924634e-20!GO:0031980;mitochondrial lumen;1.47771281631069e-20!GO:0005759;mitochondrial matrix;1.47771281631069e-20!GO:0015935;small ribosomal subunit;2.04582297314138e-20!GO:0044455;mitochondrial membrane part;3.24497501119509e-20!GO:0006119;oxidative phosphorylation;5.04401240041428e-20!GO:0044451;nucleoplasm part;1.48352683288927e-18!GO:0005681;spliceosome;2.53064121784071e-18!GO:0012505;endomembrane system;3.81404823719271e-18!GO:0044432;endoplasmic reticulum part;1.44752204626819e-17!GO:0006457;protein folding;1.87432518552599e-17!GO:0000166;nucleotide binding;4.55341162538385e-17!GO:0022402;cell cycle process;5.59036963923705e-17!GO:0051186;cofactor metabolic process;1.24557623494164e-16!GO:0005746;mitochondrial respiratory chain;1.46207576970814e-16!GO:0005730;nucleolus;7.59261065835569e-16!GO:0016462;pyrophosphatase activity;8.30136582749001e-16!GO:0051649;establishment of cellular localization;1.08854493055375e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.08979057939031e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13036375548665e-15!GO:0048770;pigment granule;1.99516969184803e-15!GO:0042470;melanosome;1.99516969184803e-15!GO:0000278;mitotic cell cycle;2.09134519139974e-15!GO:0008134;transcription factor binding;2.09247476965057e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.49211866801285e-15!GO:0051641;cellular localization;2.49786091088955e-15!GO:0017111;nucleoside-triphosphatase activity;4.30809539251902e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36333570059141e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.9630675666258e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.35395349764356e-14!GO:0003954;NADH dehydrogenase activity;1.35395349764356e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.35395349764356e-14!GO:0005761;mitochondrial ribosome;4.39190039289728e-14!GO:0000313;organellar ribosome;4.39190039289728e-14!GO:0044248;cellular catabolic process;2.81709467110411e-13!GO:0016874;ligase activity;4.4825698720493e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.90279278345121e-13!GO:0042773;ATP synthesis coupled electron transport;4.90279278345121e-13!GO:0051276;chromosome organization and biogenesis;6.34276952999424e-13!GO:0006732;coenzyme metabolic process;7.97049514595381e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.12259201036966e-13!GO:0045271;respiratory chain complex I;9.12259201036966e-13!GO:0005747;mitochondrial respiratory chain complex I;9.12259201036966e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.00524227735151e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03668130404991e-12!GO:0044265;cellular macromolecule catabolic process;1.10531141571444e-12!GO:0006605;protein targeting;1.44850719075297e-12!GO:0005794;Golgi apparatus;1.56227151602723e-12!GO:0051082;unfolded protein binding;1.80830957192785e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.9798438122026e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.62566663984874e-12!GO:0005789;endoplasmic reticulum membrane;2.67606729369106e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.86303528547394e-12!GO:0022403;cell cycle phase;4.22307433517042e-12!GO:0003676;nucleic acid binding;4.67354320545505e-12!GO:0006974;response to DNA damage stimulus;5.27757708713909e-12!GO:0017076;purine nucleotide binding;5.7896225044261e-12!GO:0032553;ribonucleotide binding;5.7896225044261e-12!GO:0032555;purine ribonucleotide binding;5.7896225044261e-12!GO:0006323;DNA packaging;5.82819975708798e-12!GO:0005694;chromosome;6.44717048409712e-12!GO:0006512;ubiquitin cycle;1.30944680252246e-11!GO:0044427;chromosomal part;1.38631544108382e-11!GO:0043285;biopolymer catabolic process;1.52838002284391e-11!GO:0022618;protein-RNA complex assembly;1.57683167452884e-11!GO:0009057;macromolecule catabolic process;2.7113004336258e-11!GO:0009055;electron carrier activity;2.74696822252849e-11!GO:0043412;biopolymer modification;3.32956298544853e-11!GO:0008135;translation factor activity, nucleic acid binding;1.50585807439057e-10!GO:0042254;ribosome biogenesis and assembly;1.66766401641423e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.81229589140919e-10!GO:0007067;mitosis;1.91670919126959e-10!GO:0000087;M phase of mitotic cell cycle;1.97879664197494e-10!GO:0065004;protein-DNA complex assembly;1.983775609943e-10!GO:0019941;modification-dependent protein catabolic process;2.13303384527205e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.13303384527205e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.83259180418071e-10!GO:0000375;RNA splicing, via transesterification reactions;2.83259180418071e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.83259180418071e-10!GO:0044257;cellular protein catabolic process;3.31742013542005e-10!GO:0005793;ER-Golgi intermediate compartment;3.49523533588456e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.74572269158792e-10!GO:0012501;programmed cell death;4.14638500458136e-10!GO:0006260;DNA replication;4.40247605166626e-10!GO:0048193;Golgi vesicle transport;4.50788899092524e-10!GO:0003712;transcription cofactor activity;4.50788899092524e-10!GO:0009719;response to endogenous stimulus;4.99889744295231e-10!GO:0005524;ATP binding;5.08543088176921e-10!GO:0032559;adenyl ribonucleotide binding;5.70050200099175e-10!GO:0000785;chromatin;6.50708294740394e-10!GO:0006333;chromatin assembly or disassembly;6.61986386473144e-10!GO:0051726;regulation of cell cycle;6.75926243346721e-10!GO:0006464;protein modification process;7.29553807020962e-10!GO:0030554;adenyl nucleotide binding;7.41297746556003e-10!GO:0000074;regulation of progression through cell cycle;7.55605276658232e-10!GO:0006915;apoptosis;7.79861094990719e-10!GO:0006281;DNA repair;1.0207230532771e-09!GO:0016491;oxidoreductase activity;1.42017311972092e-09!GO:0030163;protein catabolic process;4.9299263591533e-09!GO:0006913;nucleocytoplasmic transport;5.17352058949831e-09!GO:0048523;negative regulation of cellular process;5.79363352797567e-09!GO:0005635;nuclear envelope;6.29675113697189e-09!GO:0006399;tRNA metabolic process;6.50663468346136e-09!GO:0006334;nucleosome assembly;6.95717600321831e-09!GO:0008219;cell death;7.66248558746477e-09!GO:0016265;death;7.66248558746477e-09!GO:0031497;chromatin assembly;8.26351749046946e-09!GO:0009259;ribonucleotide metabolic process;9.79255425624518e-09!GO:0051188;cofactor biosynthetic process;1.05951168548396e-08!GO:0016070;RNA metabolic process;1.12622433217411e-08!GO:0000279;M phase;1.19903430801924e-08!GO:0051169;nuclear transport;1.19903430801924e-08!GO:0006163;purine nucleotide metabolic process;1.22205060516358e-08!GO:0009150;purine ribonucleotide metabolic process;2.02362740377813e-08!GO:0007005;mitochondrion organization and biogenesis;2.25579317992671e-08!GO:0006461;protein complex assembly;2.51103920452783e-08!GO:0016604;nuclear body;2.73177349019389e-08!GO:0031965;nuclear membrane;3.35566843061768e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.37399943046838e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.90410905749403e-08!GO:0043687;post-translational protein modification;4.38196645045886e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.43570757499224e-08!GO:0051301;cell division;5.42090603010926e-08!GO:0003743;translation initiation factor activity;6.63305921750878e-08!GO:0016192;vesicle-mediated transport;6.82529328798614e-08!GO:0017038;protein import;7.04183608872081e-08!GO:0006164;purine nucleotide biosynthetic process;7.77889060564745e-08!GO:0042623;ATPase activity, coupled;8.83488049277863e-08!GO:0016740;transferase activity;9.11698050748544e-08!GO:0009056;catabolic process;1.15770559966225e-07!GO:0005788;endoplasmic reticulum lumen;1.20340753162694e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.25029191503779e-07!GO:0009260;ribonucleotide biosynthetic process;1.32827002200942e-07!GO:0048519;negative regulation of biological process;1.38777534229032e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.5381479923772e-07!GO:0006364;rRNA processing;1.61987857538554e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92836991162034e-07!GO:0009141;nucleoside triphosphate metabolic process;1.97586124443592e-07!GO:0008565;protein transporter activity;2.2875844093066e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.37039237221447e-07!GO:0044453;nuclear membrane part;2.6382650755194e-07!GO:0009060;aerobic respiration;3.29432703558094e-07!GO:0065002;intracellular protein transport across a membrane;3.30606076194647e-07!GO:0006091;generation of precursor metabolites and energy;3.32571287727279e-07!GO:0016887;ATPase activity;3.59971089076619e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.70213079030614e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.70213079030614e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.70213079030614e-07!GO:0016072;rRNA metabolic process;3.70213079030614e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.53216539303767e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.53216539303767e-07!GO:0006366;transcription from RNA polymerase II promoter;4.79089224730749e-07!GO:0042981;regulation of apoptosis;5.24032428093212e-07!GO:0043067;regulation of programmed cell death;5.24032428093212e-07!GO:0009117;nucleotide metabolic process;5.99251915891701e-07!GO:0006413;translational initiation;7.92922009369501e-07!GO:0016568;chromatin modification;9.28600037011827e-07!GO:0015986;ATP synthesis coupled proton transport;9.63364285947147e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.63364285947147e-07!GO:0043038;amino acid activation;1.1037648620136e-06!GO:0006418;tRNA aminoacylation for protein translation;1.1037648620136e-06!GO:0043039;tRNA aminoacylation;1.1037648620136e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.11102875025487e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.11102875025487e-06!GO:0016853;isomerase activity;1.30079810412313e-06!GO:0006446;regulation of translational initiation;1.56471206325493e-06!GO:0003714;transcription corepressor activity;1.57111503287926e-06!GO:0008639;small protein conjugating enzyme activity;1.65649217024977e-06!GO:0045333;cellular respiration;1.74005264181249e-06!GO:0003924;GTPase activity;1.76283943857676e-06!GO:0016607;nuclear speck;1.87865014545262e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97476602922319e-06!GO:0051329;interphase of mitotic cell cycle;2.07228142160014e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.13507096520285e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.13507096520285e-06!GO:0008654;phospholipid biosynthetic process;2.17905347676496e-06!GO:0016564;transcription repressor activity;2.19756430087781e-06!GO:0046034;ATP metabolic process;2.33586422423518e-06!GO:0009108;coenzyme biosynthetic process;2.77390945192973e-06!GO:0005667;transcription factor complex;3.23888833516169e-06!GO:0051325;interphase;3.2580160667188e-06!GO:0004842;ubiquitin-protein ligase activity;3.26426995046943e-06!GO:0015630;microtubule cytoskeleton;3.61801224106187e-06!GO:0030120;vesicle coat;4.15730899043532e-06!GO:0030662;coated vesicle membrane;4.15730899043532e-06!GO:0019829;cation-transporting ATPase activity;4.36987006050615e-06!GO:0031324;negative regulation of cellular metabolic process;4.62746286685034e-06!GO:0005762;mitochondrial large ribosomal subunit;4.83350085487437e-06!GO:0000315;organellar large ribosomal subunit;4.83350085487437e-06!GO:0019787;small conjugating protein ligase activity;4.87655964990631e-06!GO:0016779;nucleotidyltransferase activity;5.1908778370867e-06!GO:0005643;nuclear pore;5.80873258177062e-06!GO:0045259;proton-transporting ATP synthase complex;5.99196286410665e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.99778038152246e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.5109822754493e-06!GO:0005768;endosome;6.85761977159309e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.50631303020836e-06!GO:0006754;ATP biosynthetic process;1.03958966411529e-05!GO:0006753;nucleoside phosphate metabolic process;1.03958966411529e-05!GO:0003899;DNA-directed RNA polymerase activity;1.0897241560519e-05!GO:0003697;single-stranded DNA binding;1.10297549060878e-05!GO:0044431;Golgi apparatus part;1.14623693039522e-05!GO:0016881;acid-amino acid ligase activity;1.18997820982867e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.22148470416549e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.46453075903415e-05!GO:0008610;lipid biosynthetic process;1.46453075903415e-05!GO:0045786;negative regulation of progression through cell cycle;1.48412060102476e-05!GO:0046930;pore complex;1.59609778507666e-05!GO:0051246;regulation of protein metabolic process;1.78280663664539e-05!GO:0006099;tricarboxylic acid cycle;1.78280663664539e-05!GO:0046356;acetyl-CoA catabolic process;1.78280663664539e-05!GO:0006084;acetyl-CoA metabolic process;2.08256105481219e-05!GO:0004386;helicase activity;2.08608746839021e-05!GO:0048475;coated membrane;2.10912011582532e-05!GO:0030117;membrane coat;2.10912011582532e-05!GO:0031252;leading edge;2.18932376690324e-05!GO:0016787;hydrolase activity;2.27543293029671e-05!GO:0008026;ATP-dependent helicase activity;2.27655518389275e-05!GO:0045454;cell redox homeostasis;2.54295137434039e-05!GO:0000786;nucleosome;2.86082506342599e-05!GO:0019843;rRNA binding;3.34657459673652e-05!GO:0043069;negative regulation of programmed cell death;4.17973827925678e-05!GO:0008361;regulation of cell size;4.23860700773925e-05!GO:0006916;anti-apoptosis;4.37950308175014e-05!GO:0051187;cofactor catabolic process;4.50854484811055e-05!GO:0006752;group transfer coenzyme metabolic process;4.56446801290105e-05!GO:0009892;negative regulation of metabolic process;4.59905688402947e-05!GO:0006793;phosphorus metabolic process;4.67576932374124e-05!GO:0006796;phosphate metabolic process;4.67576932374124e-05!GO:0005791;rough endoplasmic reticulum;4.77725371852272e-05!GO:0016126;sterol biosynthetic process;4.81990159587654e-05!GO:0043066;negative regulation of apoptosis;4.87690758304811e-05!GO:0050794;regulation of cellular process;5.00082146470848e-05!GO:0016049;cell growth;5.1435237411624e-05!GO:0044440;endosomal part;5.1435237411624e-05!GO:0010008;endosome membrane;5.1435237411624e-05!GO:0016310;phosphorylation;5.21764839596034e-05!GO:0051170;nuclear import;5.36628083236482e-05!GO:0009109;coenzyme catabolic process;5.60887167900628e-05!GO:0004298;threonine endopeptidase activity;6.06877611593008e-05!GO:0044262;cellular carbohydrate metabolic process;6.60169640805262e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.52522823549552e-05!GO:0005905;coated pit;8.24319302855053e-05!GO:0006606;protein import into nucleus;8.24319302855053e-05!GO:0016563;transcription activator activity;8.89351051487206e-05!GO:0043623;cellular protein complex assembly;8.94475875177401e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.47615648181293e-05!GO:0019899;enzyme binding;9.52183112231823e-05!GO:0030867;rough endoplasmic reticulum membrane;9.62593471865351e-05!GO:0032446;protein modification by small protein conjugation;9.86833058691585e-05!GO:0006403;RNA localization;0.000102804725526413!GO:0050657;nucleic acid transport;0.000105588117988366!GO:0051236;establishment of RNA localization;0.000105588117988366!GO:0050658;RNA transport;0.000105588117988366!GO:0005773;vacuole;0.000105588117988366!GO:0051427;hormone receptor binding;0.000108361714012855!GO:0007010;cytoskeleton organization and biogenesis;0.000110036342654361!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000110289030998516!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000115653386385061!GO:0016023;cytoplasmic membrane-bound vesicle;0.00012232140630819!GO:0003713;transcription coactivator activity;0.000127908048592975!GO:0000245;spliceosome assembly;0.000129747127747916!GO:0016567;protein ubiquitination;0.000140034282052233!GO:0015980;energy derivation by oxidation of organic compounds;0.000141843728073217!GO:0031988;membrane-bound vesicle;0.000144690657875446!GO:0016859;cis-trans isomerase activity;0.00015555457363203!GO:0043566;structure-specific DNA binding;0.000155611235005082!GO:0001558;regulation of cell growth;0.000165111861200706!GO:0048522;positive regulation of cellular process;0.000166519913046889!GO:0030176;integral to endoplasmic reticulum membrane;0.000178450171986121!GO:0005770;late endosome;0.00017889620067036!GO:0033116;ER-Golgi intermediate compartment membrane;0.00018204049527347!GO:0046474;glycerophospholipid biosynthetic process;0.00018222230722091!GO:0051789;response to protein stimulus;0.000183432366391088!GO:0006986;response to unfolded protein;0.000183432366391088!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188524482290033!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000195292231888424!GO:0035257;nuclear hormone receptor binding;0.000201678580788757!GO:0005525;GTP binding;0.000201678580788757!GO:0005813;centrosome;0.000245161881829701!GO:0005798;Golgi-associated vesicle;0.000255002618745479!GO:0000139;Golgi membrane;0.000267808789908169!GO:0000314;organellar small ribosomal subunit;0.00027169625166378!GO:0005763;mitochondrial small ribosomal subunit;0.00027169625166378!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000288420094916861!GO:0016481;negative regulation of transcription;0.000327489088287472!GO:0006082;organic acid metabolic process;0.000360784795449463!GO:0031982;vesicle;0.000366630935481913!GO:0043681;protein import into mitochondrion;0.00038786592285207!GO:0031410;cytoplasmic vesicle;0.00038786592285207!GO:0006839;mitochondrial transport;0.00038786592285207!GO:0005819;spindle;0.000427073789122733!GO:0019752;carboxylic acid metabolic process;0.00043848603355511!GO:0006626;protein targeting to mitochondrion;0.000466399653064504!GO:0050789;regulation of biological process;0.000480430317314728!GO:0030029;actin filament-based process;0.000486223550168347!GO:0005048;signal sequence binding;0.000532113881797346!GO:0005815;microtubule organizing center;0.000534878957543572!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000592108889363815!GO:0006695;cholesterol biosynthetic process;0.000600031137810416!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000609358683367275!GO:0000323;lytic vacuole;0.000663112744763591!GO:0005764;lysosome;0.000663112744763591!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000663380578731448!GO:0046467;membrane lipid biosynthetic process;0.000699555379390347!GO:0030133;transport vesicle;0.000702769905582677!GO:0006613;cotranslational protein targeting to membrane;0.000745233514577977!GO:0031968;organelle outer membrane;0.000784879258976047!GO:0019867;outer membrane;0.000799017573950603!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000820977414885354!GO:0065009;regulation of a molecular function;0.000853795462937966!GO:0009165;nucleotide biosynthetic process;0.000926077516989347!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00100237870720204!GO:0043284;biopolymer biosynthetic process;0.0010080149955156!GO:0042802;identical protein binding;0.00101296560009743!GO:0008250;oligosaccharyl transferase complex;0.00110340318077321!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00113678136698267!GO:0015002;heme-copper terminal oxidase activity;0.00113678136698267!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00113678136698267!GO:0004129;cytochrome-c oxidase activity;0.00113678136698267!GO:0006261;DNA-dependent DNA replication;0.00115728474836328!GO:0032561;guanyl ribonucleotide binding;0.00118737086718986!GO:0019001;guanyl nucleotide binding;0.00118737086718986!GO:0030880;RNA polymerase complex;0.00119805495797532!GO:0008632;apoptotic program;0.00130552283669362!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0013096947574603!GO:0051920;peroxiredoxin activity;0.00132942129536956!GO:0007006;mitochondrial membrane organization and biogenesis;0.00133776221828451!GO:0005741;mitochondrial outer membrane;0.00139469733302047!GO:0008033;tRNA processing;0.00150845146880273!GO:0006414;translational elongation;0.00150845146880273!GO:0006520;amino acid metabolic process;0.00157014006457981!GO:0006979;response to oxidative stress;0.00160388029079837!GO:0043488;regulation of mRNA stability;0.00165590909380237!GO:0043487;regulation of RNA stability;0.00165590909380237!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00166101361653367!GO:0051028;mRNA transport;0.00176150394926181!GO:0000151;ubiquitin ligase complex;0.001766830691949!GO:0003724;RNA helicase activity;0.00187118013513005!GO:0046489;phosphoinositide biosynthetic process;0.00189068241801631!GO:0030132;clathrin coat of coated pit;0.00192622035719145!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00195073789985617!GO:0005774;vacuolar membrane;0.00201164866026221!GO:0043021;ribonucleoprotein binding;0.00225973500842672!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00234426839746406!GO:0005769;early endosome;0.00242697199440923!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00257744241027012!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00269335713121869!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00286479330680033!GO:0015399;primary active transmembrane transporter activity;0.00286479330680033!GO:0040008;regulation of growth;0.00293477497270155!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293477497270155!GO:0000428;DNA-directed RNA polymerase complex;0.00293477497270155!GO:0005885;Arp2/3 protein complex;0.00293843089605514!GO:0018196;peptidyl-asparagine modification;0.00295170335092969!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00295170335092969!GO:0006950;response to stress;0.0030209573953658!GO:0006118;electron transport;0.00313994127387501!GO:0016125;sterol metabolic process;0.00313994127387501!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00317408210828628!GO:0003682;chromatin binding;0.00340841375241569!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00349159056750668!GO:0006778;porphyrin metabolic process;0.00350058949066864!GO:0033013;tetrapyrrole metabolic process;0.00350058949066864!GO:0048518;positive regulation of biological process;0.00350892276164082!GO:0008637;apoptotic mitochondrial changes;0.00353556607019474!GO:0031902;late endosome membrane;0.00353556607019474!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00369414159834508!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00369414159834508!GO:0007051;spindle organization and biogenesis;0.00412343894842473!GO:0030027;lamellipodium;0.00414099479226403!GO:0016860;intramolecular oxidoreductase activity;0.00418696404206626!GO:0005657;replication fork;0.00424819058809814!GO:0008092;cytoskeletal protein binding;0.0043163031007793!GO:0006612;protein targeting to membrane;0.00460378632728408!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00473972825238347!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00473972825238347!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00473972825238347!GO:0006779;porphyrin biosynthetic process;0.00477770701143106!GO:0033014;tetrapyrrole biosynthetic process;0.00477770701143106!GO:0000075;cell cycle checkpoint;0.00483034511829092!GO:0015992;proton transport;0.00484942901697861!GO:0046483;heterocycle metabolic process;0.00491993357963315!GO:0051168;nuclear export;0.00502837448180346!GO:0044452;nucleolar part;0.00502837448180346!GO:0005684;U2-dependent spliceosome;0.00519957044943387!GO:0044437;vacuolar part;0.00522046480533029!GO:0004576;oligosaccharyl transferase activity;0.00539757330411609!GO:0006818;hydrogen transport;0.00539757330411609!GO:0050662;coenzyme binding;0.00540924905308281!GO:0016741;transferase activity, transferring one-carbon groups;0.00544290494968905!GO:0031072;heat shock protein binding;0.00554911092542001!GO:0006402;mRNA catabolic process;0.00568471945273521!GO:0008168;methyltransferase activity;0.00568899859499138!GO:0008186;RNA-dependent ATPase activity;0.00577445602279535!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00587347944937171!GO:0005765;lysosomal membrane;0.00599706274049019!GO:0006740;NADPH regeneration;0.00611692153983677!GO:0006098;pentose-phosphate shunt;0.00611692153983677!GO:0006595;polyamine metabolic process;0.00611901791129628!GO:0045792;negative regulation of cell size;0.00622191028046593!GO:0007264;small GTPase mediated signal transduction;0.00632177477290613!GO:0006807;nitrogen compound metabolic process;0.00633066602319071!GO:0032508;DNA duplex unwinding;0.00633066602319071!GO:0032392;DNA geometric change;0.00633066602319071!GO:0017166;vinculin binding;0.00648347524910531!GO:0006650;glycerophospholipid metabolic process;0.00674211777722337!GO:0006268;DNA unwinding during replication;0.00694110564745372!GO:0040029;regulation of gene expression, epigenetic;0.00702169793634045!GO:0045941;positive regulation of transcription;0.00715836026444215!GO:0016044;membrane organization and biogenesis;0.00719242011721355!GO:0007346;regulation of progression through mitotic cell cycle;0.00720244631557598!GO:0045892;negative regulation of transcription, DNA-dependent;0.00739337400417774!GO:0007040;lysosome organization and biogenesis;0.00752846000649446!GO:0030308;negative regulation of cell growth;0.00762109494708028!GO:0016272;prefoldin complex;0.00780418452453143!GO:0008094;DNA-dependent ATPase activity;0.00788292300281592!GO:0001726;ruffle;0.00811181583740119!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00820085767471593!GO:0030118;clathrin coat;0.00835608764387443!GO:0007050;cell cycle arrest;0.00836324597475213!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00842561079785188!GO:0005874;microtubule;0.00843496030845916!GO:0042168;heme metabolic process;0.0089009272914544!GO:0007243;protein kinase cascade;0.00897653565637873!GO:0004674;protein serine/threonine kinase activity;0.00906400539379853!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00919176860955752!GO:0048037;cofactor binding;0.00924342918063349!GO:0006066;alcohol metabolic process;0.00932632806865284!GO:0008286;insulin receptor signaling pathway;0.00961932939230692!GO:0051252;regulation of RNA metabolic process;0.00991745201121799!GO:0000082;G1/S transition of mitotic cell cycle;0.0103136581669138!GO:0030663;COPI coated vesicle membrane;0.0103238289119295!GO:0030126;COPI vesicle coat;0.0103238289119295!GO:0006643;membrane lipid metabolic process;0.0106701998146202!GO:0006790;sulfur metabolic process;0.0110428876865784!GO:0015631;tubulin binding;0.011091182175856!GO:0030658;transport vesicle membrane;0.0114302632099363!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0116801109225163!GO:0004004;ATP-dependent RNA helicase activity;0.0117696189544176!GO:0000084;S phase of mitotic cell cycle;0.0119327949699936!GO:0051348;negative regulation of transferase activity;0.0120274827364868!GO:0006783;heme biosynthetic process;0.0120803885146044!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0123982845293613!GO:0051087;chaperone binding;0.012510257394412!GO:0006497;protein amino acid lipidation;0.0125731473073164!GO:0033673;negative regulation of kinase activity;0.0126212619181675!GO:0006469;negative regulation of protein kinase activity;0.0126212619181675!GO:0048487;beta-tubulin binding;0.0128663493456437!GO:0006352;transcription initiation;0.0129583433139692!GO:0009308;amine metabolic process;0.013195374775045!GO:0045893;positive regulation of transcription, DNA-dependent;0.013422602878145!GO:0003684;damaged DNA binding;0.0135099475169737!GO:0004364;glutathione transferase activity;0.0135587775829702!GO:0035258;steroid hormone receptor binding;0.0136146521225473!GO:0030137;COPI-coated vesicle;0.0137740545569349!GO:0006401;RNA catabolic process;0.0141051767469498!GO:0008139;nuclear localization sequence binding;0.0142165858693215!GO:0009303;rRNA transcription;0.0142165858693215!GO:0000049;tRNA binding;0.0142251978014631!GO:0042158;lipoprotein biosynthetic process;0.0143910694611723!GO:0006749;glutathione metabolic process;0.0143920684645466!GO:0006644;phospholipid metabolic process;0.014397774886555!GO:0051287;NAD binding;0.0148087681488888!GO:0022890;inorganic cation transmembrane transporter activity;0.0148918511936545!GO:0009112;nucleobase metabolic process;0.0151529942524263!GO:0043414;biopolymer methylation;0.0152897978372117!GO:0005862;muscle thin filament tropomyosin;0.0155214207815452!GO:0003678;DNA helicase activity;0.0156136984772812!GO:0051101;regulation of DNA binding;0.0157765700366229!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0158424611329269!GO:0031301;integral to organelle membrane;0.0158817242543163!GO:0046426;negative regulation of JAK-STAT cascade;0.0159074977381153!GO:0006289;nucleotide-excision repair;0.0159479146080483!GO:0051540;metal cluster binding;0.0165724025731305!GO:0051536;iron-sulfur cluster binding;0.0165724025731305!GO:0051098;regulation of binding;0.0167890549437549!GO:0030119;AP-type membrane coat adaptor complex;0.0168206580831661!GO:0016363;nuclear matrix;0.0169633518797071!GO:0004177;aminopeptidase activity;0.017293428176879!GO:0051539;4 iron, 4 sulfur cluster binding;0.0173097540860883!GO:0006383;transcription from RNA polymerase III promoter;0.0173928344492696!GO:0043065;positive regulation of apoptosis;0.0174305127388318!GO:0007033;vacuole organization and biogenesis;0.017510201415887!GO:0006509;membrane protein ectodomain proteolysis;0.0175184836655648!GO:0033619;membrane protein proteolysis;0.0175184836655648!GO:0043068;positive regulation of programmed cell death;0.0175752602079776!GO:0006519;amino acid and derivative metabolic process;0.017650088831142!GO:0006506;GPI anchor biosynthetic process;0.017650088831142!GO:0044255;cellular lipid metabolic process;0.0177582005032634!GO:0065007;biological regulation;0.0181408193682755!GO:0050790;regulation of catalytic activity;0.0182581168542063!GO:0031543;peptidyl-proline dioxygenase activity;0.0190329701739293!GO:0016281;eukaryotic translation initiation factor 4F complex;0.019674764987481!GO:0000096;sulfur amino acid metabolic process;0.0197210083189526!GO:0033559;unsaturated fatty acid metabolic process;0.0197210083189526!GO:0006636;unsaturated fatty acid biosynthetic process;0.0197210083189526!GO:0008652;amino acid biosynthetic process;0.0198033629349657!GO:0001836;release of cytochrome c from mitochondria;0.0199798940917455!GO:0031272;regulation of pseudopodium formation;0.0206158598615676!GO:0031269;pseudopodium formation;0.0206158598615676!GO:0031344;regulation of cell projection organization and biogenesis;0.0206158598615676!GO:0031268;pseudopodium organization and biogenesis;0.0206158598615676!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0206158598615676!GO:0031274;positive regulation of pseudopodium formation;0.0206158598615676!GO:0048471;perinuclear region of cytoplasm;0.0209341319249867!GO:0043492;ATPase activity, coupled to movement of substances;0.0209369653053262!GO:0030384;phosphoinositide metabolic process;0.0209516036073359!GO:0030433;ER-associated protein catabolic process;0.0210349845995384!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0210349845995384!GO:0031418;L-ascorbic acid binding;0.0212306900815597!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0215276912367653!GO:0030125;clathrin vesicle coat;0.0215974624936933!GO:0030665;clathrin coated vesicle membrane;0.0215974624936933!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0216456273741497!GO:0051052;regulation of DNA metabolic process;0.0216906060082851!GO:0019798;procollagen-proline dioxygenase activity;0.0218264987211482!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0219145831955161!GO:0030134;ER to Golgi transport vesicle;0.0219405824064154!GO:0030131;clathrin adaptor complex;0.0219926510646405!GO:0035035;histone acetyltransferase binding;0.0220820956463469!GO:0045926;negative regulation of growth;0.022200937686319!GO:0006739;NADP metabolic process;0.0227972554838018!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0241199585653661!GO:0033239;negative regulation of amine metabolic process;0.0242508541855982!GO:0045763;negative regulation of amino acid metabolic process;0.0242508541855982!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0242508541855982!GO:0008203;cholesterol metabolic process;0.0246978094200821!GO:0030041;actin filament polymerization;0.0248918758249089!GO:0030145;manganese ion binding;0.0250276673962838!GO:0030660;Golgi-associated vesicle membrane;0.0251075681204135!GO:0008047;enzyme activator activity;0.0253101236638227!GO:0003729;mRNA binding;0.0256208004137227!GO:0048468;cell development;0.0265471207953008!GO:0006505;GPI anchor metabolic process;0.0268033052342349!GO:0030508;thiol-disulfide exchange intermediate activity;0.026932196140236!GO:0000792;heterochromatin;0.0271249084858174!GO:0006458;'de novo' protein folding;0.0271519389240912!GO:0051084;'de novo' posttranslational protein folding;0.0271519389240912!GO:0006891;intra-Golgi vesicle-mediated transport;0.0272229595302147!GO:0003756;protein disulfide isomerase activity;0.0276155133719797!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0276155133719797!GO:0030659;cytoplasmic vesicle membrane;0.0277310414256764!GO:0006275;regulation of DNA replication;0.0283924500711059!GO:0016301;kinase activity;0.0285119285943343!GO:0008538;proteasome activator activity;0.0286408624762994!GO:0000775;chromosome, pericentric region;0.0291371482116189!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0295073192420076!GO:0005581;collagen;0.0295954234800322!GO:0005869;dynactin complex;0.0302603645304212!GO:0031124;mRNA 3'-end processing;0.0305377181061621!GO:0005975;carbohydrate metabolic process;0.0305402421762832!GO:0006405;RNA export from nucleus;0.0308544700389575!GO:0000059;protein import into nucleus, docking;0.0310546801700175!GO:0043433;negative regulation of transcription factor activity;0.0310738262662978!GO:0019206;nucleoside kinase activity;0.0310738262662978!GO:0006220;pyrimidine nucleotide metabolic process;0.031839744212688!GO:0000209;protein polyubiquitination;0.0319104147069089!GO:0000030;mannosyltransferase activity;0.0319250577016469!GO:0007088;regulation of mitosis;0.032091464319144!GO:0005996;monosaccharide metabolic process;0.0321494411799812!GO:0008213;protein amino acid alkylation;0.0321522580571305!GO:0006479;protein amino acid methylation;0.0321522580571305!GO:0003746;translation elongation factor activity;0.0321522580571305!GO:0006338;chromatin remodeling;0.032998713902426!GO:0051128;regulation of cellular component organization and biogenesis;0.032998713902426!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0330107535685539!GO:0006007;glucose catabolic process;0.0334146338905745!GO:0006302;double-strand break repair;0.0334146338905745!GO:0022415;viral reproductive process;0.0337330150066918!GO:0019318;hexose metabolic process;0.0339689833456889!GO:0032259;methylation;0.0340552466646511!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0343304076902713!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0348357136819557!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0348357136819557!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0348357136819557!GO:0051716;cellular response to stimulus;0.0358289061504975!GO:0045936;negative regulation of phosphate metabolic process;0.0362051323945418!GO:0007021;tubulin folding;0.0364773712647683!GO:0031529;ruffle organization and biogenesis;0.0368307757838464!GO:0000123;histone acetyltransferase complex;0.0368307757838464!GO:0005832;chaperonin-containing T-complex;0.0395376589139018!GO:0000305;response to oxygen radical;0.0396647154269905!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0405596781606226!GO:0045039;protein import into mitochondrial inner membrane;0.0405596781606226!GO:0043189;H4/H2A histone acetyltransferase complex;0.0416757985037518!GO:0051320;S phase;0.0416971205088304!GO:0009116;nucleoside metabolic process;0.0419876452014891!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0422620779853174!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0422620779853174!GO:0030127;COPII vesicle coat;0.0422620779853174!GO:0012507;ER to Golgi transport vesicle membrane;0.0422620779853174!GO:0030521;androgen receptor signaling pathway;0.0426870048974079!GO:0006611;protein export from nucleus;0.0427800232736803!GO:0048500;signal recognition particle;0.0430187628333579!GO:0006733;oxidoreduction coenzyme metabolic process;0.0432774416765709!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0434406908415351!GO:0006984;ER-nuclear signaling pathway;0.0445512854964493!GO:0005758;mitochondrial intermembrane space;0.0446645228419735!GO:0030911;TPR domain binding;0.0448767346904198!GO:0008629;induction of apoptosis by intracellular signals;0.0459550665648076!GO:0016584;nucleosome positioning;0.0460492489328674!GO:0000287;magnesium ion binding;0.0463978984214391!GO:0006730;one-carbon compound metabolic process;0.0466206149518247!GO:0051085;chaperone cofactor-dependent protein folding;0.0471122012890503!GO:0003923;GPI-anchor transamidase activity;0.0472414757055272!GO:0016255;attachment of GPI anchor to protein;0.0472414757055272!GO:0042765;GPI-anchor transamidase complex;0.0472414757055272!GO:0003711;transcription elongation regulator activity;0.0473691153215164!GO:0016407;acetyltransferase activity;0.048302350422034!GO:0030503;regulation of cell redox homeostasis;0.0488254505886593!GO:0045334;clathrin-coated endocytic vesicle;0.0491481257289238!GO:0050178;phenylpyruvate tautomerase activity;0.0494266644683411 | |||
|sample_id=11508 | |sample_id=11508 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=esophagus | |sample_tissue=esophagus | ||
|top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187 | |top_motifs=GTF2A1,2:2.13038654261;TAL1_TCF{3,4,12}:2.00860276639;PBX1:1.88339149824;ZNF238:1.63548786977;ZNF423:1.58263155071;EBF1:1.54725842689;RXRA_VDR{dimer}:1.43795781861;TFAP4:1.43426770715;HAND1,2:1.43051930575;GZF1:1.31383830607;ESR1:1.3033170909;XCPE1{core}:1.22399419205;GLI1..3:1.20509754846;HOX{A5,B5}:1.20352174166;SRF:1.19243887878;RXR{A,B,G}:1.08992735587;NR5A1,2:1.04538770675;ZIC1..3:1.00712686627;TLX1..3_NFIC{dimer}:0.981473819317;HOX{A6,A7,B6,B7}:0.97949291053;NANOG:0.914010711916;ZNF148:0.878977105263;ESRRA:0.857514078161;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.837419755891;TEAD1:0.836576931595;TFCP2:0.825724589728;NKX3-1:0.825524427227;LHX3,4:0.818511061826;TBP:0.812345182992;bHLH_family:0.773534521912;NR3C1:0.744570394066;ALX4:0.719470720086;TP53:0.682481794401;NR6A1:0.635260157281;SOX5:0.570467081294;TOPORS:0.569678463495;CRX:0.560025797956;SP1:0.550169691092;IKZF1:0.538053949623;RREB1:0.533212256337;PAX5:0.529592273838;STAT5{A,B}:0.498646706922;MYBL2:0.482899727283;FOXQ1:0.474111949868;FOXM1:0.467022286766;GFI1:0.464653174135;NR1H4:0.451920229476;HES1:0.449206504722;LEF1_TCF7_TCF7L1,2:0.440005278378;GTF2I:0.43634823209;TFAP2{A,C}:0.432650306809;NFY{A,B,C}:0.426779563201;SOX17:0.400598981591;DBP:0.375158803111;POU2F1..3:0.36579352254;KLF4:0.342216066764;PATZ1:0.335113136818;MTF1:0.334987678737;GFI1B:0.329490253122;HIC1:0.311621345106;TFAP2B:0.285291227451;E2F1..5:0.230570833895;HNF4A_NR2F1,2:0.206285375115;TBX4,5:0.194323295361;HSF1,2:0.191885047629;LMO2:0.189882813416;TFDP1:0.185886606004;ZBTB6:0.165967124228;HNF1A:0.146447626069;PAX1,9:0.135522357256;AR:0.121434532456;TEF:0.0951435904681;NFE2L2:0.0918368727075;FOXL1:0.0914583962866;BACH2:0.0724267195342;MEF2{A,B,C,D}:0.0715830740396;ZNF143:0.070038622957;MZF1:0.0697499026747;NKX2-3_NKX2-5:0.0499355449599;GCM1,2:0.0348041299365;JUN:0.0324554710837;MAZ:0.0291335826788;ZNF384:0.0232118745208;REST:0.0033666709502;FOS_FOS{B,L1}_JUN{B,D}:-0.00710138187246;HOXA9_MEIS1:-0.00834627231806;CDC5L:-0.0217432221389;MYOD1:-0.0330104734062;YY1:-0.033852582021;PPARG:-0.0341190769105;NANOG{mouse}:-0.0404791596011;RORA:-0.0746238071918;STAT2,4,6:-0.0807156358788;SPZ1:-0.0927740861978;POU3F1..4:-0.0939178488271;PAX8:-0.0977710244943;RFX1:-0.127532879678;NFE2:-0.128946952109;HLF:-0.146675297876;CEBPA,B_DDIT3:-0.147560479329;PRRX1,2:-0.148541944868;NFKB1_REL_RELA:-0.15020819167;RUNX1..3:-0.160257138915;CUX2:-0.176101866156;SOX{8,9,10}:-0.18445220309;POU5F1:-0.187697649048;UFEwm:-0.189366515833;POU6F1:-0.204694597043;OCT4_SOX2{dimer}:-0.206340836596;NFIX:-0.208542388547;PAX3,7:-0.214924048672;ARID5B:-0.219461543353;NKX3-2:-0.235093497314;ONECUT1,2:-0.239844095781;NFE2L1:-0.249257680812;XBP1:-0.260403708097;GATA6:-0.265340653491;MAFB:-0.267925639274;T:-0.277795647129;ATF6:-0.296207910543;FOSL2:-0.318893706744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341415005119;AHR_ARNT_ARNT2:-0.347015952855;POU1F1:-0.362668059292;ADNP_IRX_SIX_ZHX:-0.376132419724;MTE{core}:-0.38619767928;MYB:-0.392121461387;FOXA2:-0.416296525904;ETS1,2:-0.4211425921;VSX1,2:-0.427540310165;NHLH1,2:-0.442930454499;PITX1..3:-0.456850513611;NKX2-2,8:-0.458130705008;SNAI1..3:-0.471645600138;EGR1..3:-0.485915968289;MYFfamily:-0.49346339124;FOX{F1,F2,J1}:-0.501413575018;SPIB:-0.506037880431;HMX1:-0.526046347456;HIF1A:-0.548357702892;NRF1:-0.554833490971;MED-1{core}:-0.563897304138;NKX6-1,2:-0.564431054133;TLX2:-0.5771551958;RFX2..5_RFXANK_RFXAP:-0.588223540713;FOX{I1,J2}:-0.614137842311;ELK1,4_GABP{A,B1}:-0.617006782961;ATF2:-0.666131679141;SMAD1..7,9:-0.667677283385;PAX2:-0.677581225203;IRF1,2:-0.687512025696;FOXD3:-0.693971750516;NKX2-1,4:-0.695046951868;PRDM1:-0.706836175434;FOX{D1,D2}:-0.718788008307;ZEB1:-0.724330646875;EN1,2:-0.730712593611;NFIL3:-0.733579031775;NFATC1..3:-0.748916987732;EP300:-0.822863620483;SPI1:-0.825810394395;PDX1:-0.835860125262;IRF7:-0.838147470581;PAX4:-0.84208193219;FOXP3:-0.853940984254;TGIF1:-0.866800171848;DMAP1_NCOR{1,2}_SMARC:-0.894361039238;CREB1:-0.935236638469;AIRE:-0.949256570057;HOX{A4,D4}:-0.96484483054;EVI1:-0.966611047261;GATA4:-0.972615795779;ELF1,2,4:-0.985254948005;ZFP161:-1.02895001092;BREu{core}:-1.04080507219;ATF4:-1.06545808529;FOXP1:-1.08442177575;FOXO1,3,4:-1.08658285484;ATF5_CREB3:-1.09343714972;SOX2:-1.10496702874;SREBF1,2:-1.15249811267;CDX1,2,4:-1.19658217111;PAX6:-1.19875420553;BPTF:-1.20232948518;HMGA1,2:-1.34159984671;STAT1,3:-1.35884123628;HBP1_HMGB_SSRP1_UBTF:-1.37470318239;ZBTB16:-1.65816663422;ALX1:-1.71414947222;IKZF2:-1.78193827745;RBPJ:-1.9889659868;FOXN1:-2.02404463187 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11508-119G5;search_select_hide=table117:FF:11508-119G5 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Esophageal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11324 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11324
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11324
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.925 |
| 10 | 10 | 0.615 |
| 100 | 100 | 0.13 |
| 101 | 101 | 0.288 |
| 102 | 102 | 0.62 |
| 103 | 103 | 0.897 |
| 104 | 104 | 0.127 |
| 105 | 105 | 0.029 |
| 106 | 106 | 0.118 |
| 107 | 107 | 0.0328 |
| 108 | 108 | 0.681 |
| 109 | 109 | 0.0569 |
| 11 | 11 | 0.0414 |
| 110 | 110 | 0.0978 |
| 111 | 111 | 0.725 |
| 112 | 112 | 0.626 |
| 113 | 113 | 0.93 |
| 114 | 114 | 0.948 |
| 115 | 115 | 0.929 |
| 116 | 116 | 0.0473 |
| 117 | 117 | 0.828 |
| 118 | 118 | 0.603 |
| 119 | 119 | 0.854 |
| 12 | 12 | 0.371 |
| 120 | 120 | 0.523 |
| 121 | 121 | 0.266 |
| 122 | 122 | 0.789 |
| 123 | 123 | 0.0465 |
| 124 | 124 | 0.406 |
| 125 | 125 | 0.284 |
| 126 | 126 | 0.531 |
| 127 | 127 | 0.866 |
| 128 | 128 | 0.346 |
| 129 | 129 | 0.808 |
| 13 | 13 | 0.289 |
| 130 | 130 | 0.177 |
| 131 | 131 | 0.683 |
| 132 | 132 | 0.548 |
| 133 | 133 | 0.264 |
| 134 | 134 | 0.161 |
| 135 | 135 | 0.285 |
| 136 | 136 | 0.842 |
| 137 | 137 | 0.073 |
| 138 | 138 | 0.0357 |
| 139 | 139 | 0.715 |
| 14 | 14 | 0.906 |
| 140 | 140 | 0.567 |
| 141 | 141 | 0.563 |
| 142 | 142 | 0.11 |
| 143 | 143 | 0.376 |
| 144 | 144 | 0.441 |
| 145 | 145 | 0.284 |
| 146 | 146 | 0.254 |
| 147 | 147 | 0.379 |
| 148 | 148 | 0.379 |
| 149 | 149 | 0.317 |
| 15 | 15 | 0.673 |
| 150 | 150 | 0.496 |
| 151 | 151 | 0.539 |
| 152 | 152 | 0.108 |
| 153 | 153 | 0.069 |
| 154 | 154 | 0.212 |
| 155 | 155 | 0.395 |
| 156 | 156 | 0.473 |
| 157 | 157 | 0.282 |
| 158 | 158 | 0.18 |
| 159 | 159 | 0.886 |
| 16 | 16 | 0.168 |
| 160 | 160 | 0.0544 |
| 161 | 161 | 0.244 |
| 162 | 162 | 0.0647 |
| 163 | 163 | 0.954 |
| 164 | 164 | 0.637 |
| 165 | 165 | 0.0801 |
| 166 | 166 | 0.931 |
| 167 | 167 | 0.149 |
| 168 | 168 | 0.618 |
| 169 | 169 | 0.0884 |
| 17 | 17 | 0.158 |
| 18 | 18 | 0.242 |
| 19 | 19 | 0.0968 |
| 2 | 2 | 0.451 |
| 20 | 20 | 0.56 |
| 21 | 21 | 0.883 |
| 22 | 22 | 0.105 |
| 23 | 23 | 0.585 |
| 24 | 24 | 0.54 |
| 25 | 25 | 0.565 |
| 26 | 26 | 0.00642 |
| 27 | 27 | 0.476 |
| 28 | 28 | 0.146 |
| 29 | 29 | 0.986 |
| 3 | 3 | 0.78 |
| 30 | 30 | 0.127 |
| 31 | 31 | 0.357 |
| 32 | 32 | 1.95543e-6 |
| 33 | 33 | 0.436 |
| 34 | 34 | 0.0913 |
| 35 | 35 | 0.575 |
| 36 | 36 | 0.661 |
| 37 | 37 | 0.593 |
| 38 | 38 | 0.438 |
| 39 | 39 | 0.484 |
| 4 | 4 | 0.438 |
| 40 | 40 | 0.00547 |
| 41 | 41 | 0.265 |
| 42 | 42 | 0.568 |
| 43 | 43 | 0.274 |
| 44 | 44 | 0.65 |
| 45 | 45 | 0.344 |
| 46 | 46 | 0.177 |
| 47 | 47 | 0.23 |
| 48 | 48 | 0.108 |
| 49 | 49 | 0.177 |
| 5 | 5 | 0.734 |
| 50 | 50 | 0.32 |
| 51 | 51 | 0.328 |
| 52 | 52 | 0.521 |
| 53 | 53 | 0.673 |
| 54 | 54 | 0.636 |
| 55 | 55 | 0.606 |
| 56 | 56 | 0.184 |
| 57 | 57 | 0.514 |
| 58 | 58 | 0.342 |
| 59 | 59 | 0.052 |
| 6 | 6 | 0.375 |
| 60 | 60 | 0.54 |
| 61 | 61 | 0.652 |
| 62 | 62 | 0.497 |
| 63 | 63 | 0.317 |
| 64 | 64 | 0.107 |
| 65 | 65 | 0.0615 |
| 66 | 66 | 0.203 |
| 67 | 67 | 0.948 |
| 68 | 68 | 0.0603 |
| 69 | 69 | 0.15 |
| 7 | 7 | 0.728 |
| 70 | 70 | 0.861 |
| 71 | 71 | 0.0728 |
| 72 | 72 | 0.584 |
| 73 | 73 | 0.0642 |
| 74 | 74 | 0.745 |
| 75 | 75 | 0.696 |
| 76 | 76 | 0.633 |
| 77 | 77 | 0.0306 |
| 78 | 78 | 0.576 |
| 79 | 79 | 0.378 |
| 8 | 8 | 0.0288 |
| 80 | 80 | 0.827 |
| 81 | 81 | 0.852 |
| 82 | 82 | 0.692 |
| 83 | 83 | 0.857 |
| 84 | 84 | 0.377 |
| 85 | 85 | 0.373 |
| 86 | 86 | 0.905 |
| 87 | 87 | 0.27 |
| 88 | 88 | 0.18 |
| 89 | 89 | 0.291 |
| 9 | 9 | 0.176 |
| 90 | 90 | 0.0254 |
| 91 | 91 | 0.359 |
| 92 | 92 | 0.426 |
| 93 | 93 | 0.538 |
| 94 | 94 | 0.203 |
| 95 | 95 | 0.343 |
| 96 | 96 | 0.953 |
| 97 | 97 | 0.545 |
| 98 | 98 | 0.629 |
| 99 | 99 | 6.57564e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11324
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000182 human esophageal smooth muscle cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002599 (smooth muscle cell of the esophagus)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000182 (human esophageal smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
