FFCP PHASE1:Hg19::chr16:2390769..2390789,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:2390769..2390789,-
|short_description=p2@ABCA3
|description=CAGE_peak_2_at_ABCA3_5end
|association_with_transcript=-22bp_to_ENST00000382381,NM_001089,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=21 | |EntrezGene=21 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33 | |HGNC=33 | ||
|TSSclassifier=strong | |||
|UniProt=Q4LE27,Q6P5P9,Q99758 | |UniProt=Q4LE27,Q6P5P9,Q99758 | ||
|association_with_transcript=-22bp_to_ENST00000382381,NM_001089,uc002cpy.1,uc010bsk.1,uc010bsl.1_5end | |||
|cluster_id=chr16:2390769..2390789,- | |||
|coexpression_cluster_id=C2367 | |||
|description=CAGE_peak_2_at_ABCA3_5end | |||
|id=chr16:2390769..2390789,- | |||
|ontology_enrichment_celltype=CL:0002078!3.66e-09!44;CL:0002139!3.91e-09!24;CL:0000213!5.30e-08!57;CL:0000215!5.30e-08!57;CL:0000115!6.93e-08!35;CL:0000071!9.37e-08!18;CL:0002546!9.37e-08!18;CL:0000066!1.48e-07!254;CL:1000497!3.21e-07!18;CL:0002518!3.21e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.75e-10;24!CL:0000071;1.93e-09;18!CL:1000497;1.32e-08;17!CL:0002518;1.32e-08;17!CL:0000115;1.35e-07;36!CL:1000449;1.83e-07;15!CL:1000507;2.57e-07;10!CL:1000494;2.57e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.56e-10,24;CL:0002078,1.16e-09,45;CL:0000071,1.70e-09,18;CL:0002546,1.70e-09,18;CL:0000115,3.03e-09,36;CL:1000497,9.53e-09,17;CL:0002518,9.53e-09,17;CL:0000213,6.89e-08,58;CL:0000215,6.89e-08,58;CL:1000449,1.24e-07,15;CL:1000507,1.83e-07,10;CL:1000494,1.83e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.50e-10;82!CL:0002546;1.93e-09;18!UBERON:0002532;7.87e-07;206!UBERON:0010316;7.87e-07;206 | |||
|ontology_enrichment_disease=DOID:0050687!2.02e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.21e-30!115;UBERON:0005743!4.05e-30!86;UBERON:0000073!3.92e-29!94;UBERON:0001016!3.92e-29!94;UBERON:0001017!1.21e-28!82;UBERON:0001049!1.60e-27!57;UBERON:0005068!1.60e-27!57;UBERON:0006241!1.60e-27!57;UBERON:0007135!1.60e-27!57;UBERON:0002346!6.29e-26!90;UBERON:0003075!3.93e-25!86;UBERON:0007284!3.93e-25!86;UBERON:0000955!3.58e-24!69;UBERON:0006238!3.58e-24!69;UBERON:0002616!8.20e-22!59;UBERON:0003080!4.83e-21!42;UBERON:0002780!8.52e-21!41;UBERON:0001890!8.52e-21!41;UBERON:0006240!8.52e-21!41;UBERON:0000025!8.97e-19!194;UBERON:0003056!1.94e-18!61;UBERON:0001893!5.56e-18!34;UBERON:0002020!5.87e-18!34;UBERON:0003528!5.87e-18!34;UBERON:0002791!2.76e-17!33;UBERON:0001869!3.71e-17!32;UBERON:0000477!1.08e-15!286;UBERON:0004111!4.79e-15!241;UBERON:0000956!1.06e-13!25;UBERON:0000203!1.06e-13!25;UBERON:0002619!1.07e-13!22;UBERON:0001950!1.43e-12!20;UBERON:0000153!1.53e-12!129;UBERON:0007811!1.53e-12!129;UBERON:0000924!2.36e-12!173;UBERON:0006601!2.36e-12!173;UBERON:0000033!7.00e-12!123;UBERON:0004121!1.16e-11!169;UBERON:0000489!6.90e-11!32;UBERON:0002113!3.68e-10!27;UBERON:0003918!3.68e-10!27;UBERON:0005095!3.68e-10!27;UBERON:0007687!3.68e-10!27;UBERON:0000483!3.69e-10!309;UBERON:0000119!3.85e-10!312;UBERON:0000064!4.82e-10!219;UBERON:0000468!4.54e-08!659;UBERON:0001986!9.37e-08!18;UBERON:0004638!9.37e-08!18;UBERON:0004852!9.37e-08!18;UBERON:0000922!1.08e-07!612;UBERON:0003076!1.22e-07!15;UBERON:0003057!1.22e-07!15;UBERON:0003887!1.51e-07!21;UBERON:0000080!3.55e-07!18;UBERON:0002120!3.55e-07!18;UBERON:0004875!3.55e-07!18;UBERON:0005721!3.55e-07!18;UBERON:0005754!3.55e-07!18;UBERON:0007297!3.55e-07!18;UBERON:0006555!8.94e-07!17;UBERON:0005103!8.94e-07!17;UBERON:0000083!8.94e-07!17;UBERON:0009201!8.94e-07!17;UBERON:0004819!8.94e-07!17;UBERON:0006553!8.94e-07!17;UBERON:0003074!8.94e-07!17;UBERON:0003060!8.94e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;7.33e-19;34!UBERON:0003528;1.15e-18;34!UBERON:0002020;1.15e-18;34!UBERON:0001869;1.42e-18;32!UBERON:0002791;3.70e-18;32!UBERON:0000073;5.30e-18;53!UBERON:0002616;5.30e-18;53!UBERON:0002780;6.22e-18;41!UBERON:0001890;6.22e-18;41!UBERON:0002619;1.39e-17;22!UBERON:0000956;1.75e-16;25!UBERON:0000203;1.75e-16;25!UBERON:0001950;3.67e-16;20!UBERON:0001017;9.49e-14;75!UBERON:0000955;1.64e-13;68!UBERON:0001016;5.50e-13;83!UBERON:0000489;1.18e-12;29!UBERON:0002113;2.35e-11;24!UBERON:0011143;2.35e-11;24!UBERON:0007023;4.30e-10;114!UBERON:0004638;1.93e-09;18!UBERON:0001986;1.93e-09;18!UBERON:0004852;1.93e-09;18!UBERON:0006554;3.54e-08;30!UBERON:0001008;3.54e-08;30!UBERON:0006555;1.83e-07;15!UBERON:0004819;1.83e-07;15!UBERON:0001285;1.83e-07;15!UBERON:0007684;1.83e-07;15!UBERON:0000487;2.19e-07;22!UBERON:0004211;2.57e-07;10!UBERON:0009773;2.57e-07;10!UBERON:0001231;2.57e-07;10!UBERON:0004810;2.57e-07;10!UBERON:0004732;2.57e-07;13!UBERON:0004733;6.07e-07;12!UBERON:0002028;6.07e-07;12 | |||
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| ||
|short_description=p2@ABCA3 | |||
}} | }} |
Latest revision as of 06:51, 25 September 2015
Short description: | p2@ABCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ABCA3_5end |
Coexpression cluster: | C2367_occipital_temporal_brain_postcentral_parietal_paracentral_insula |
Association with transcript: | -22bp_to_ENST00000382381, NM_001089, uc002cpy.1, uc010bsk.1, uc010bsl.1_5end |
EntrezGene: | ABCA3 |
HGNC: | 33 |
UniProt: | Q4LE27Q6P5P9Q99758 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.56e-10 | 24 |
meso-epithelial cell | 1.16e-09 | 45 |
blood vessel endothelial cell | 1.70e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.70e-09 | 18 |
endothelial cell | 3.03e-09 | 36 |
kidney cell | 9.53e-09 | 17 |
kidney epithelial cell | 9.53e-09 | 17 |
lining cell | 6.89e-08 | 58 |
barrier cell | 6.89e-08 | 58 |
epithelial cell of nephron | 1.24e-07 | 15 |
kidney tubule cell | 1.83e-07 | 10 |
nephron tubule epithelial cell | 1.83e-07 | 10 |