FFCP PHASE1:Hg19::chr1:111217541..111217576,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:111217541..111217576,- to FFCP PHASE1:Hg19::chr1:111217541..111217576,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3738 | |EntrezGene=3738 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6221 | |HGNC=6221 | ||
|TSSclassifier=strong | |||
|UniProt=P22001,Q6P2D3,B2RA23 | |UniProt=P22001,Q6P2D3,B2RA23 | ||
|association_with_transcript=78bp_to_ENST00000369769,NM_002232,uc001dzv.1_5end | |||
|cluster_id=chr1:111217541..111217576,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_KCNA3_5end | |||
|id=chr1:111217541..111217576,- | |||
|ontology_enrichment_celltype=CL:0002087!1.65e-42!119;CL:0000738!2.37e-40!140;CL:0002031!4.80e-35!124;CL:0000037!1.89e-32!172;CL:0000566!1.89e-32!172;CL:0000988!9.50e-31!182;CL:0002032!5.58e-29!165;CL:0000837!5.58e-29!165;CL:0000542!4.79e-25!53;CL:0000051!4.79e-25!53;CL:0000838!1.30e-24!52;CL:0002057!6.36e-19!42;CL:0000860!1.55e-16!45;CL:0000084!5.73e-16!25;CL:0000827!5.73e-16!25;CL:0000766!7.94e-16!76;CL:0000791!9.79e-16!18;CL:0000789!9.79e-16!18;CL:0002420!9.79e-16!18;CL:0002419!9.79e-16!18;CL:0000790!9.79e-16!18;CL:0002194!1.80e-15!63;CL:0000576!1.80e-15!63;CL:0000040!1.80e-15!63;CL:0000559!1.80e-15!63;CL:0002009!2.02e-14!65;CL:0000839!4.32e-13!70;CL:0000557!4.62e-13!71;CL:0000625!3.74e-10!11;CL:0000763!6.08e-09!112;CL:0000049!6.08e-09!112;CL:0000236!2.94e-08!14;CL:0000945!3.08e-08!24;CL:0000826!3.08e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.01e-19;25!CL:0000860;3.69e-19;33!CL:0002057;3.69e-19;33!CL:0000791;8.10e-19;18!CL:0000789;8.10e-19;18!CL:0002419;8.10e-19;18!CL:0000542;3.66e-17;53!CL:0002087;8.35e-16;104!CL:0000576;3.17e-14;48!CL:0000473;4.38e-13;39!CL:0000234;4.38e-13;39!CL:0000625;4.99e-12;11!CL:0000236;1.11e-09;13!CL:0000738;1.97e-09;136!CL:0000766;1.34e-08;69!CL:0000945;3.05e-08;24!CL:0000624;8.49e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,1.28e-47,115;CL:0000738,4.66e-45,136;CL:0002031,2.18e-38,120;CL:0000037,7.43e-36,168;CL:0000988,4.89e-35,177;CL:0002032,2.25e-32,161;CL:0000837,2.25e-32,161;CL:0000542,1.97e-28,53;CL:0000051,1.97e-28,53;CL:0000838,6.62e-28,52;CL:0000860,2.67e-21,42;CL:0002057,2.67e-21,42;CL:0000084,2.67e-19,25;CL:0000827,2.67e-19,25;CL:0000791,7.87e-19,18;CL:0000789,7.87e-19,18;CL:0002420,7.87e-19,18;CL:0002419,7.87e-19,18;CL:0000790,7.87e-19,18;CL:0000473,7.14e-18,48;CL:0000234,7.14e-18,48;CL:0000766,3.90e-17,72;CL:0002194,1.23e-16,59;CL:0000576,1.23e-16,59;CL:0000040,1.23e-16,59;CL:0000559,1.23e-16,59;CL:0002009,1.28e-15,61;CL:0000557,5.95e-14,67;CL:0000839,2.26e-13,66;CL:0000625,5.00e-12,11;CL:0000236,6.83e-10,14;CL:0000763,1.47e-09,108;CL:0000049,1.47e-09,108;CL:0000945,3.09e-08,24;CL:0000826,3.09e-08,24;CL:0000624,8.49e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000790;8.10e-19;18!CL:0000051;3.66e-17;53!CL:0002057;8.66e-16;42 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.66e-33!115;UBERON:0002390!1.78e-21!102;UBERON:0003061!1.78e-21!102;UBERON:0002193!7.38e-19!112;UBERON:0001049!1.06e-16!57;UBERON:0005068!1.06e-16!57;UBERON:0006241!1.06e-16!57;UBERON:0007135!1.06e-16!57;UBERON:0003080!3.02e-14!42;UBERON:0002780!5.77e-14!41;UBERON:0001890!5.77e-14!41;UBERON:0006240!5.77e-14!41;UBERON:0002020!2.04e-13!34;UBERON:0003528!2.04e-13!34;UBERON:0001017!2.73e-13!82;UBERON:0001893!3.64e-13!34;UBERON:0002616!6.85e-13!59;UBERON:0001869!8.09e-13!32;UBERON:0005743!8.35e-13!86;UBERON:0002791!9.57e-13!33;UBERON:0000073!6.86e-12!94;UBERON:0001016!6.86e-12!94;UBERON:0000178!2.36e-11!15;UBERON:0000179!2.36e-11!15;UBERON:0000463!2.36e-11!15;UBERON:0002371!4.91e-11!80;UBERON:0002619!1.11e-10!22;UBERON:0000955!1.28e-10!69;UBERON:0006238!1.28e-10!69;UBERON:0000956!1.30e-10!25;UBERON:0000203!1.30e-10!25;UBERON:0001950!9.20e-10!20;UBERON:0003075!3.57e-09!86;UBERON:0007284!3.57e-09!86;UBERON:0001474!4.67e-09!86;UBERON:0002346!4.88e-08!90;UBERON:0003056!3.70e-07!61;UBERON:0002405!4.04e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-13;15!UBERON:0000179;1.75e-13;15!UBERON:0000463;1.75e-13;15!UBERON:0002619;7.98e-13;22!UBERON:0001950;9.90e-12;20!UBERON:0000956;1.62e-10;25!UBERON:0000203;1.62e-10;25!UBERON:0003528;2.14e-10;34!UBERON:0002020;2.14e-10;34!UBERON:0001893;2.15e-10;34!UBERON:0001869;2.63e-10;32!UBERON:0002791;3.96e-10;32!UBERON:0002780;1.38e-09;41!UBERON:0001890;1.38e-09;41!UBERON:0002390;2.28e-09;32!UBERON:0000073;3.14e-09;53!UBERON:0002616;3.14e-09;53!UBERON:0007023;8.58e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.25e-25,98;UBERON:0003061,6.25e-25,98;UBERON:0007023,6.96e-25,114;UBERON:0002193,1.52e-22,108;UBERON:0001049,2.20e-15,56;UBERON:0005068,2.20e-15,56;UBERON:0006241,2.20e-15,56;UBERON:0007135,2.20e-15,56;UBERON:0000073,3.63e-14,53;UBERON:0002616,3.63e-14,53;UBERON:0002405,1.47e-13,93;UBERON:0000178,1.72e-13,15;UBERON:0000179,1.72e-13,15;UBERON:0000463,1.72e-13,15;UBERON:0002619,7.99e-13,22;UBERON:0002780,1.22e-12,41;UBERON:0001890,1.22e-12,41;UBERON:0003080,1.22e-12,41;UBERON:0006240,1.22e-12,41;UBERON:0003528,2.49e-12,34;UBERON:0002020,2.49e-12,34;UBERON:0002371,3.33e-12,76;UBERON:0001017,4.10e-12,81;UBERON:0001893,4.57e-12,34;UBERON:0001950,1.05e-11,20;UBERON:0001869,1.32e-11,32;UBERON:0002791,2.46e-11,32;UBERON:0001016,4.01e-11,89;UBERON:0000956,1.62e-10,25;UBERON:0000203,1.62e-10,25;UBERON:0000955,2.46e-10,68;UBERON:0006238,2.46e-10,68;UBERON:0001474,2.69e-10,82;UBERON:0003075,1.76e-08,82;UBERON:0007284,1.76e-08,82;UBERON:0004765,3.17e-08,90;UBERON:0002346,1.54e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85870796139317,0.136874425072884,0.125542639594803,0.229240217243854,0.164201178899891,0.0787107813136792,4.72037132218685,9.59573495243032,6.96672554922342,0,0,0,7.12698245338775,1.13735385989937,5.87200878669694,13.8498852132969,18.0490002723128,18.4459240108474,1.34349284543955,4.53451132426571,0.77272670290256,14.685222116736,12.8477820854195,21.5899814457156,10.6917356976615,3.28934310417461,6.81354015969228,2.8769239232215,4.09857130446561,3.07426898855161,10.6871161028352,6.45484683583826,5.41705946377367,5.27078550719293,2.72906150057846,5.16864014223695,7.65209730927256,6.09765151444578,7.67204550958849,10.5552416059749,4.18873681005427,9.37694451171927,8.9964863974861,10.2129340444405,14.3249117268982,4.01997864410789,3.12889751052121,3.69221035998698,16.9511860737343,12.8897172595648,19.304205633894,1.05627643155971,1.4882300997553,1.88692780957538,2.2465726229299,3.30389164251314,1.6072558669708,0,0.19891667719909,0.182664153764634,19.3595868907455,14.1996038928154,18.6796943311347,16.2157484575273,13.6134635592244,16.66782075868,9.25462821898807,11.4486450544244,11.384259382189,22.3150131960957,20.6427543187624,11.8954195721123,5.60508562981536,6.05783394982677,66.6846120685894,69.5629050066022,73.8109381408238,11.3686816865661,36.5032938629621,33.6147942071661,52.6032166701361,13.8148966537615,32.4066498222321,38.3253637629665,38.9957563821622,13.4495885711959,18.0782493108231,12.3328428452757,10.5013006758622,11.5921234294021,66.5806668597651,61.8019312887237,53.3131171405382,15.1834519214739,48.2857821938421,49.1387247040161,49.0858202517836,29.626583532141,26.0433381542567,21.8603970223126,23.0379932188992,22.2696703408688,46.224368824368,32.2017062779863,29.5606078891577,30.2410114837099,23.8021774247322,28.2407587571458,0,0,0,0,0,0,0,0,0,0,0,2.16115474571226,0,0,0.324547393654683,0.522389211897802,0.797747763113191,3.57735936458013,0.571994910780128,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.348581828608555,0.10366105501537,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,1.96973604869918,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,7.84596007954691,25.4169680660486,31.26599835463,25.9252933285092,4.8277978602268,5.20559415430487,0.773288812777695,1.50764638800914,1.27587750330633,0,5.9832291840805,3.31532410748828,0,0,0,0,0,0,0.35142424497814,0,0,0,0,0,2.34585759063824,0,0,30.1881318139416,30.1999881146064,25.934796546237,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0.532685175939381,0,0,0,0,0,0,0.114814448164607,2.00300284807389,0.655622074797121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0.256450125116389,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,1.06461206063404,0,0,0,0,0,0,1.535386747868,0.855877976067841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.354761064070598,0.633322905892992,0,0,0,0,0,0,2.07116361708914,0,0,0,0,16.7457711046616,8.41100927856613,19.9376515510957,20.7261644648276,20.5681136543097,7.13320642311989,13.5007859309529,22.2075049362396,0,0,0,4.45927620301725,0,1.13826949357463,2.8696729091188,1.39705560002972,0.191505370132367,0,0,0,0.228234679033192,0,0,0,0,2.01799707191048,9.36861722918718,0,2.15068535015921,2.46043718681657,2.66958626739054,5.66625476665917,0,0,0,0,0,0,1.17206543417515,0,25.1862048467101,0,0,0,0,7.95318118213038,7.17414023693615,0,0,0,1.59398390600856,9.39365312805902,0,0,5.04647702390385,0,0,0,2.04628948090749,3.15658898038188,19.1586473877552,0,6.78532922266653,3.9890282209596,7.98455192004777,0,0,2.17499872630438,0,0,0,2.75794698593172,0,0.347249989866585,0.885741385813839,10.2506972831597,7.62908681585416,9.73097487394777,4.72876190325676,7.67848890038904,0,0,1.53900517007594,0,0,0,0,0,3.29751336246704,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,2.65372693510018,0.611030144933625,17.4947465921567,6.05463300837864,2.8193926366473,1.34802265961354,0,1.1713222286267,2.37191225980366,0,0,0.789168805698781,0,11.9368377035891,1.5796644907122,1.05226393590145,0.414752765588989,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,1.74580229679155,0,0.677942222341597,0,0,8.35702506617599,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.64286454670392,11.4971929260275,0.429765441419957,1.57732412567589,1.95497680890578,0.458320848023367,1.43574604915363,0,0,0.89268582976749,0.671834724867263,0.720599767084807,0,0,0,0,0,0,8.74752658790234,3.81369537112412,0.160753148465019,0,0.415440338029185,0,0,8.26193970549135,0,0.709251365692784,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0.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| ||
|short_description=p1@KCNA3 | |||
}} | }} |
Latest revision as of 01:53, 16 September 2015
Short description: | p1@KCNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KCNA3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 78bp_to_ENST00000369769, NM_002232, uc001dzv.1_5end |
EntrezGene: | KCNA3 |
HGNC: | 6221 |
UniProt: | P22001Q6P2D3B2RA23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.25e-25 | 98 |
blood island | 6.25e-25 | 98 |
adult organism | 6.96e-25 | 114 |
hemolymphoid system | 1.52e-22 | 108 |
neural tube | 2.20e-15 | 56 |
neural rod | 2.20e-15 | 56 |
future spinal cord | 2.20e-15 | 56 |
neural keel | 2.20e-15 | 56 |
regional part of nervous system | 3.63e-14 | 53 |
regional part of brain | 3.63e-14 | 53 |
immune system | 1.47e-13 | 93 |
blood | 1.72e-13 | 15 |
haemolymphatic fluid | 1.72e-13 | 15 |
organism substance | 1.72e-13 | 15 |
regional part of cerebral cortex | 7.99e-13 | 22 |
regional part of forebrain | 1.22e-12 | 41 |
forebrain | 1.22e-12 | 41 |
anterior neural tube | 1.22e-12 | 41 |
future forebrain | 1.22e-12 | 41 |
brain grey matter | 2.49e-12 | 34 |
gray matter | 2.49e-12 | 34 |
bone marrow | 3.33e-12 | 76 |
central nervous system | 4.10e-12 | 81 |
telencephalon | 4.57e-12 | 34 |
neocortex | 1.05e-11 | 20 |
cerebral hemisphere | 1.32e-11 | 32 |
regional part of telencephalon | 2.46e-11 | 32 |
nervous system | 4.01e-11 | 89 |
cerebral cortex | 1.62e-10 | 25 |
pallium | 1.62e-10 | 25 |
brain | 2.46e-10 | 68 |
future brain | 2.46e-10 | 68 |
bone element | 2.69e-10 | 82 |
neural plate | 1.76e-08 | 82 |
presumptive neural plate | 1.76e-08 | 82 |
skeletal element | 3.17e-08 | 90 |
neurectoderm | 1.54e-07 | 86 |