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{{f5samples
{{f5samples
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Line 35: Line 42:
|fonse_treatment_closure=
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|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=78.32925
|rna_weight_ug=78.32925
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|sample_age=60
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Line 69: Line 92:
|sample_ethnicity=
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.64823366204864e-242!GO:0005737;cytoplasm;1.0333707433089e-145!GO:0043226;organelle;1.12245752954422e-125!GO:0043229;intracellular organelle;2.45196698875363e-125!GO:0043227;membrane-bound organelle;4.43516786288435e-119!GO:0043231;intracellular membrane-bound organelle;4.48962181159347e-119!GO:0044444;cytoplasmic part;3.11344970007576e-94!GO:0044422;organelle part;3.74083936885482e-69!GO:0044446;intracellular organelle part;5.78428783767844e-68!GO:0032991;macromolecular complex;1.74369150820452e-65!GO:0005515;protein binding;3.51362855734643e-63!GO:0030529;ribonucleoprotein complex;1.82422105681586e-48!GO:0003723;RNA binding;5.81194633737225e-46!GO:0044428;nuclear part;9.90654739738535e-42!GO:0005634;nucleus;2.5740408512777e-41!GO:0016043;cellular component organization and biogenesis;2.81241163333484e-41!GO:0043233;organelle lumen;4.3278501077529e-40!GO:0031974;membrane-enclosed lumen;4.3278501077529e-40!GO:0044237;cellular metabolic process;2.11747103900598e-39!GO:0044238;primary metabolic process;3.41726029493619e-39!GO:0005739;mitochondrion;5.4115178306563e-39!GO:0043170;macromolecule metabolic process;2.02533813979536e-37!GO:0033036;macromolecule localization;1.24069688289016e-35!GO:0015031;protein transport;1.9690169768061e-35!GO:0043234;protein complex;2.35115791499239e-34!GO:0031090;organelle membrane;3.49962838815046e-33!GO:0045184;establishment of protein localization;2.25028455742312e-32!GO:0016071;mRNA metabolic process;3.2633040048693e-32!GO:0008104;protein localization;6.99449498873756e-32!GO:0006396;RNA processing;6.02882878239376e-30!GO:0046907;intracellular transport;2.79243000441705e-29!GO:0008380;RNA splicing;8.08126312458477e-29!GO:0044429;mitochondrial part;8.21007134151555e-28!GO:0031967;organelle envelope;1.39499536066764e-26!GO:0006397;mRNA processing;1.85014578369424e-26!GO:0031975;envelope;2.04408642059943e-26!GO:0031981;nuclear lumen;1.54023426940092e-25!GO:0006886;intracellular protein transport;8.81200174398403e-25!GO:0019538;protein metabolic process;1.24658182896893e-24!GO:0051649;establishment of cellular localization;2.46179163370485e-24!GO:0005840;ribosome;2.86645822136338e-24!GO:0010467;gene expression;3.84391775875387e-24!GO:0005829;cytosol;6.43400328462514e-24!GO:0051641;cellular localization;2.32769089767499e-23!GO:0016192;vesicle-mediated transport;8.44498134305381e-23!GO:0043283;biopolymer metabolic process;1.5799675212261e-22!GO:0044260;cellular macromolecule metabolic process;1.3254035146147e-21!GO:0006119;oxidative phosphorylation;5.43608526945681e-21!GO:0044267;cellular protein metabolic process;6.1421172795406e-21!GO:0006412;translation;2.56128156413671e-20!GO:0005681;spliceosome;4.0854235153515e-19!GO:0003735;structural constituent of ribosome;4.22883502139456e-19!GO:0005740;mitochondrial envelope;5.62099241404687e-19!GO:0031966;mitochondrial membrane;6.95234898963147e-19!GO:0019866;organelle inner membrane;1.41028892642198e-18!GO:0005654;nucleoplasm;1.90263209715712e-18!GO:0005743;mitochondrial inner membrane;2.00994780950169e-17!GO:0044451;nucleoplasm part;4.22868157942977e-17!GO:0065003;macromolecular complex assembly;6.98794609167768e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.56908239953663e-17!GO:0006457;protein folding;1.75415657753372e-16!GO:0033279;ribosomal subunit;2.57723905157066e-16!GO:0006512;ubiquitin cycle;5.71227519435352e-16!GO:0044455;mitochondrial membrane part;1.4683118741498e-15!GO:0022607;cellular component assembly;3.64023335357956e-15!GO:0005794;Golgi apparatus;4.19837794922374e-15!GO:0006996;organelle organization and biogenesis;6.94223937983992e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.21010807173384e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;4.0164344477959e-14!GO:0016874;ligase activity;4.04588540627708e-14!GO:0009058;biosynthetic process;4.04588540627708e-14!GO:0005746;mitochondrial respiratory chain;4.08037396513961e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.10501774392491e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.10501774392491e-14!GO:0003954;NADH dehydrogenase activity;4.10501774392491e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.10501774392491e-14!GO:0000166;nucleotide binding;4.65583468115204e-14!GO:0016462;pyrophosphatase activity;4.77525546231743e-14!GO:0044249;cellular biosynthetic process;5.48802835795359e-14!GO:0048770;pigment granule;6.41949583842884e-14!GO:0042470;melanosome;6.41949583842884e-14!GO:0017111;nucleoside-triphosphatase activity;7.69360706389545e-14!GO:0009059;macromolecule biosynthetic process;1.90110254126751e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.13446373981035e-13!GO:0044265;cellular macromolecule catabolic process;2.98059688764211e-13!GO:0016070;RNA metabolic process;6.05066183860611e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.49291775739245e-12!GO:0044445;cytosolic part;1.56407048797228e-12!GO:0012505;endomembrane system;1.61955296033305e-12!GO:0016604;nuclear body;1.66327594915481e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.81052010092764e-12!GO:0048193;Golgi vesicle transport;2.15388658120612e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.25548927704616e-12!GO:0019941;modification-dependent protein catabolic process;2.6863185313179e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.6863185313179e-12!GO:0051082;unfolded protein binding;2.75238003053278e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.83071426218983e-12!GO:0045271;respiratory chain complex I;2.83071426218983e-12!GO:0005747;mitochondrial respiratory chain complex I;2.83071426218983e-12!GO:0008134;transcription factor binding;3.38163056394889e-12!GO:0044257;cellular protein catabolic process;3.580723052682e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.56267818466661e-12!GO:0042773;ATP synthesis coupled electron transport;5.56267818466661e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.51388038311744e-12!GO:0022618;protein-RNA complex assembly;1.02376686632024e-11!GO:0016607;nuclear speck;1.35613128265199e-11!GO:0031982;vesicle;1.72123668874215e-11!GO:0043228;non-membrane-bound organelle;4.58993721027064e-11!GO:0043232;intracellular non-membrane-bound organelle;4.58993721027064e-11!GO:0031410;cytoplasmic vesicle;4.70524264388441e-11!GO:0031980;mitochondrial lumen;7.68353950362491e-11!GO:0005759;mitochondrial matrix;7.68353950362491e-11!GO:0008565;protein transporter activity;1.54953994743776e-10!GO:0003676;nucleic acid binding;1.8449929086357e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.9100718084016e-10!GO:0031988;membrane-bound vesicle;2.2641391794479e-10!GO:0008135;translation factor activity, nucleic acid binding;2.38628331947476e-10!GO:0005783;endoplasmic reticulum;3.68530463485294e-10!GO:0006605;protein targeting;6.88484360037422e-10!GO:0016023;cytoplasmic membrane-bound vesicle;7.06066299529169e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.98065871836005e-10!GO:0043285;biopolymer catabolic process;8.32321758544081e-10!GO:0043412;biopolymer modification;1.30564712037165e-09!GO:0044248;cellular catabolic process;1.5422930512657e-09!GO:0045045;secretory pathway;2.49762331349066e-09!GO:0009057;macromolecule catabolic process;3.43622032967958e-09!GO:0019829;cation-transporting ATPase activity;3.66933802809185e-09!GO:0008639;small protein conjugating enzyme activity;3.67482388795743e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.72988127050081e-09!GO:0000375;RNA splicing, via transesterification reactions;3.72988127050081e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.72988127050081e-09!GO:0004842;ubiquitin-protein ligase activity;4.55175961571853e-09!GO:0000502;proteasome complex (sensu Eukaryota);4.83095585494081e-09!GO:0006913;nucleocytoplasmic transport;5.68713249980952e-09!GO:0043687;post-translational protein modification;6.471949351128e-09!GO:0015935;small ribosomal subunit;6.6566243098261e-09!GO:0006464;protein modification process;7.63617376449504e-09!GO:0032553;ribonucleotide binding;1.25238885569129e-08!GO:0032555;purine ribonucleotide binding;1.25238885569129e-08!GO:0051169;nuclear transport;1.26126926405263e-08!GO:0030163;protein catabolic process;1.30715054432788e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.51207424164484e-08!GO:0006446;regulation of translational initiation;1.84558328204711e-08!GO:0031965;nuclear membrane;2.34823722937346e-08!GO:0015934;large ribosomal subunit;3.12671306372048e-08!GO:0015986;ATP synthesis coupled proton transport;3.12671306372048e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.12671306372048e-08!GO:0019787;small conjugating protein ligase activity;3.58402306188609e-08!GO:0005635;nuclear envelope;4.08614657754679e-08!GO:0017076;purine nucleotide binding;4.48536053931553e-08!GO:0006413;translational initiation;6.48604572467968e-08!GO:0009055;electron carrier activity;8.87147853954383e-08!GO:0051186;cofactor metabolic process;9.13228521384004e-08!GO:0003712;transcription cofactor activity;1.2577842000712e-07!GO:0005730;nucleolus;1.66201746196961e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.10331386091757e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.10331386091757e-07!GO:0048475;coated membrane;2.11371400934429e-07!GO:0030117;membrane coat;2.11371400934429e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.11371400934429e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.11371400934429e-07!GO:0016887;ATPase activity;2.69864525966234e-07!GO:0003743;translation initiation factor activity;2.82042711511016e-07!GO:0005768;endosome;3.96964419413714e-07!GO:0003924;GTPase activity;4.04510500263591e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.4233372644981e-07!GO:0006164;purine nucleotide biosynthetic process;6.23912220069835e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.92834269638177e-07!GO:0006163;purine nucleotide metabolic process;9.00493873127205e-07!GO:0006754;ATP biosynthetic process;9.13921614402656e-07!GO:0006753;nucleoside phosphate metabolic process;9.13921614402656e-07!GO:0016881;acid-amino acid ligase activity;9.82694960843464e-07!GO:0044453;nuclear membrane part;9.92690917628259e-07!GO:0048471;perinuclear region of cytoplasm;1.01135654507517e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.13037074457558e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.13216044660137e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.33727424390273e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.35902051122113e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.35902051122113e-06!GO:0032940;secretion by cell;1.41905037227411e-06!GO:0016044;membrane organization and biogenesis;1.59012674241928e-06!GO:0042623;ATPase activity, coupled;1.63940394677536e-06!GO:0009150;purine ribonucleotide metabolic process;1.66306845374131e-06!GO:0006403;RNA localization;1.66906516161065e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.6729223838139e-06!GO:0009141;nucleoside triphosphate metabolic process;1.75612594762425e-06!GO:0050657;nucleic acid transport;1.84557554739884e-06!GO:0051236;establishment of RNA localization;1.84557554739884e-06!GO:0050658;RNA transport;1.84557554739884e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.13525779179628e-06!GO:0044432;endoplasmic reticulum part;2.7896067448387e-06!GO:0006732;coenzyme metabolic process;2.85975798226059e-06!GO:0005761;mitochondrial ribosome;2.86305642246171e-06!GO:0000313;organellar ribosome;2.86305642246171e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.90414726948304e-06!GO:0016564;transcription repressor activity;2.9955650702446e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.07130578110791e-06!GO:0009259;ribonucleotide metabolic process;3.37339204327503e-06!GO:0005643;nuclear pore;3.40481945118575e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.41466014942648e-06!GO:0016568;chromatin modification;4.29166934273322e-06!GO:0006461;protein complex assembly;4.55736074755002e-06!GO:0006259;DNA metabolic process;4.90605734833353e-06!GO:0006366;transcription from RNA polymerase II promoter;5.56799044663024e-06!GO:0017038;protein import;5.56799044663024e-06!GO:0009260;ribonucleotide biosynthetic process;6.09600629157821e-06!GO:0006323;DNA packaging;6.78482255058118e-06!GO:0048523;negative regulation of cellular process;7.01050040357488e-06!GO:0046034;ATP metabolic process;8.0552382026099e-06!GO:0008092;cytoskeletal protein binding;9.06326448545804e-06!GO:0044431;Golgi apparatus part;9.32917296151507e-06!GO:0032559;adenyl ribonucleotide binding;1.0422749123486e-05!GO:0032446;protein modification by small protein conjugation;1.33477424652105e-05!GO:0030120;vesicle coat;1.35490222436519e-05!GO:0030662;coated vesicle membrane;1.35490222436519e-05!GO:0006793;phosphorus metabolic process;1.39942872419526e-05!GO:0006796;phosphate metabolic process;1.39942872419526e-05!GO:0004386;helicase activity;1.41881095136833e-05!GO:0009060;aerobic respiration;1.43714357722306e-05!GO:0045259;proton-transporting ATP synthase complex;1.86838074511387e-05!GO:0005793;ER-Golgi intermediate compartment;1.89647701716804e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.15147773400509e-05!GO:0050794;regulation of cellular process;2.17676819254392e-05!GO:0044440;endosomal part;2.61354233888793e-05!GO:0010008;endosome membrane;2.61354233888793e-05!GO:0009056;catabolic process;2.76359031139929e-05!GO:0016567;protein ubiquitination;2.85329927814759e-05!GO:0045333;cellular respiration;2.99671780582277e-05!GO:0000245;spliceosome assembly;3.00253580309202e-05!GO:0051028;mRNA transport;3.20249371700666e-05!GO:0005524;ATP binding;3.45600467694842e-05!GO:0050789;regulation of biological process;3.70118062609477e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.74721599475535e-05!GO:0030554;adenyl nucleotide binding;3.79119850401379e-05!GO:0051188;cofactor biosynthetic process;4.18490369482726e-05!GO:0006897;endocytosis;4.78116282950471e-05!GO:0010324;membrane invagination;4.78116282950471e-05!GO:0008026;ATP-dependent helicase activity;4.82002550652097e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.85532732960823e-05!GO:0043566;structure-specific DNA binding;4.95353719648853e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.98982349625124e-05!GO:0015399;primary active transmembrane transporter activity;4.98982349625124e-05!GO:0000151;ubiquitin ligase complex;5.80545046028261e-05!GO:0005789;endoplasmic reticulum membrane;7.65934715301048e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.05876809142545e-05!GO:0003714;transcription corepressor activity;9.32330357461331e-05!GO:0031252;leading edge;9.32371744767815e-05!GO:0030135;coated vesicle;9.98536590748051e-05!GO:0006606;protein import into nucleus;0.000114069234099171!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000121678727112024!GO:0030532;small nuclear ribonucleoprotein complex;0.000123347704924846!GO:0008287;protein serine/threonine phosphatase complex;0.000125231565640912!GO:0005083;small GTPase regulator activity;0.000136711017083356!GO:0051170;nuclear import;0.00014539560482443!GO:0031072;heat shock protein binding;0.000164305466579732!GO:0015630;microtubule cytoskeleton;0.000172752167369128!GO:0048519;negative regulation of biological process;0.000182906643023251!GO:0009108;coenzyme biosynthetic process;0.000222674345380442!GO:0006752;group transfer coenzyme metabolic process;0.000252930754183856!GO:0000139;Golgi membrane;0.000252930754183856!GO:0008047;enzyme activator activity;0.000252930754183856!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000253606853216471!GO:0004812;aminoacyl-tRNA ligase activity;0.000253606853216471!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000253606853216471!GO:0003697;single-stranded DNA binding;0.00025498926346645!GO:0006613;cotranslational protein targeting to membrane;0.000259470059364616!GO:0046930;pore complex;0.000262556881896676!GO:0043492;ATPase activity, coupled to movement of substances;0.000275684386243679!GO:0051168;nuclear export;0.000285257731258337!GO:0003724;RNA helicase activity;0.000291875813932106!GO:0030036;actin cytoskeleton organization and biogenesis;0.000301952547408648!GO:0015631;tubulin binding;0.000315399592015156!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000321218286860105!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000334100835808905!GO:0005048;signal sequence binding;0.000372670688482075!GO:0005798;Golgi-associated vesicle;0.000399142418592961!GO:0043038;amino acid activation;0.000426068709823537!GO:0006418;tRNA aminoacylation for protein translation;0.000426068709823537!GO:0043039;tRNA aminoacylation;0.000426068709823537!GO:0006810;transport;0.000468955444145111!GO:0005791;rough endoplasmic reticulum;0.000490368985493002!GO:0051276;chromosome organization and biogenesis;0.000508921845048371!GO:0006099;tricarboxylic acid cycle;0.000518364117214425!GO:0046356;acetyl-CoA catabolic process;0.000518364117214425!GO:0016481;negative regulation of transcription;0.000530470984554827!GO:0022890;inorganic cation transmembrane transporter activity;0.000538574285691769!GO:0016791;phosphoric monoester hydrolase activity;0.000560818171087773!GO:0006607;NLS-bearing substrate import into nucleus;0.000590003992101376!GO:0005773;vacuole;0.000594670246593844!GO:0006402;mRNA catabolic process;0.000606776341327271!GO:0005769;early endosome;0.000606776341327271!GO:0032561;guanyl ribonucleotide binding;0.000640919359190059!GO:0019001;guanyl nucleotide binding;0.000640919359190059!GO:0031324;negative regulation of cellular metabolic process;0.00066630743114465!GO:0065002;intracellular protein transport across a membrane;0.000677096989903086!GO:0006891;intra-Golgi vesicle-mediated transport;0.000677096989903086!GO:0030118;clathrin coat;0.000682597744731193!GO:0004721;phosphoprotein phosphatase activity;0.000730250998670439!GO:0003713;transcription coactivator activity;0.00077231039753677!GO:0030695;GTPase regulator activity;0.000776061307889276!GO:0019899;enzyme binding;0.000886149671265948!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000927238558628968!GO:0006084;acetyl-CoA metabolic process;0.00112266007530183!GO:0009892;negative regulation of metabolic process;0.00113609672429591!GO:0005770;late endosome;0.00117028706794005!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118731473519596!GO:0016310;phosphorylation;0.00126332274035064!GO:0030029;actin filament-based process;0.00126743715485144!GO:0005525;GTP binding;0.00128914167898011!GO:0051087;chaperone binding;0.00146056102307292!GO:0008654;phospholipid biosynthetic process;0.00161232815991356!GO:0005667;transcription factor complex;0.0016279295535759!GO:0007264;small GTPase mediated signal transduction;0.0016279295535759!GO:0008361;regulation of cell size;0.00179101913549572!GO:0008139;nuclear localization sequence binding;0.00194250113208214!GO:0019717;synaptosome;0.00201764244075501!GO:0004722;protein serine/threonine phosphatase activity;0.00206827367359257!GO:0030137;COPI-coated vesicle;0.00238098042615935!GO:0030133;transport vesicle;0.00246798609517695!GO:0007010;cytoskeleton organization and biogenesis;0.00253563140913407!GO:0009109;coenzyme catabolic process;0.00262350684274962!GO:0051789;response to protein stimulus;0.00266624771231289!GO:0006986;response to unfolded protein;0.00266624771231289!GO:0019904;protein domain specific binding;0.00272072149756218!GO:0012501;programmed cell death;0.00272072149756218!GO:0006612;protein targeting to membrane;0.00285804226282788!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00289493332811355!GO:0043623;cellular protein complex assembly;0.00301411459981403!GO:0045786;negative regulation of progression through cell cycle;0.00304546793043392!GO:0006333;chromatin assembly or disassembly;0.00305051659969242!GO:0008219;cell death;0.00308844826368771!GO:0016265;death;0.00308844826368771!GO:0016197;endosome transport;0.00308844826368771!GO:0016049;cell growth;0.0031341956823661!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00321995017844586!GO:0048489;synaptic vesicle transport;0.00325659533690129!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00329087166369404!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00329087166369404!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00329087166369404!GO:0051920;peroxiredoxin activity;0.00334427245708999!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00340845865102099!GO:0006915;apoptosis;0.00344060287331757!GO:0019222;regulation of metabolic process;0.00353126025894644!GO:0065007;biological regulation;0.00364251011112837!GO:0016311;dephosphorylation;0.00385673627674586!GO:0015980;energy derivation by oxidation of organic compounds;0.00387795092734572!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00402530605414155!GO:0008017;microtubule binding;0.00408059633682955!GO:0008250;oligosaccharyl transferase complex;0.00414104666901418!GO:0000159;protein phosphatase type 2A complex;0.00419392528652275!GO:0022406;membrane docking;0.00421726398600875!GO:0048278;vesicle docking;0.00421726398600875!GO:0051187;cofactor catabolic process;0.00427132027706283!GO:0006399;tRNA metabolic process;0.00435442762529037!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00440637168203383!GO:0006414;translational elongation;0.00461787371874318!GO:0005874;microtubule;0.00467626366668466!GO:0030867;rough endoplasmic reticulum membrane;0.0050402915542153!GO:0000323;lytic vacuole;0.00510654784561185!GO:0005764;lysosome;0.00510654784561185!GO:0003779;actin binding;0.00510826616440376!GO:0005096;GTPase activator activity;0.00513531908186073!GO:0003729;mRNA binding;0.00524954070468101!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00532492322624607!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00554645422163515!GO:0003690;double-stranded DNA binding;0.00561147483220178!GO:0005813;centrosome;0.00562004552839343!GO:0005741;mitochondrial outer membrane;0.00562993836159455!GO:0004576;oligosaccharyl transferase activity;0.00562993836159455!GO:0006650;glycerophospholipid metabolic process;0.0057930910368319!GO:0005223;intracellular cGMP activated cation channel activity;0.00583296040309615!GO:0051246;regulation of protein metabolic process;0.00592974394482718!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0059329644010028!GO:0048500;signal recognition particle;0.00594365766673907!GO:0042802;identical protein binding;0.00607168605473416!GO:0019867;outer membrane;0.00635067348341053!GO:0031124;mRNA 3'-end processing;0.00637352936873684!GO:0051179;localization;0.00638325586716027!GO:0005839;proteasome core complex (sensu Eukaryota);0.00648366683106291!GO:0030426;growth cone;0.00669166692482374!GO:0001558;regulation of cell growth;0.00682525955572808!GO:0051427;hormone receptor binding;0.00683387061108249!GO:0051128;regulation of cellular component organization and biogenesis;0.00687204719812877!GO:0006904;vesicle docking during exocytosis;0.00697156182858446!GO:0030427;site of polarized growth;0.00729923182755668!GO:0051234;establishment of localization;0.00737114599015738!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00744633242948445!GO:0055083;monovalent inorganic anion homeostasis;0.00744633242948445!GO:0055064;chloride ion homeostasis;0.00744633242948445!GO:0030644;cellular chloride ion homeostasis;0.00744633242948445!GO:0031968;organelle outer membrane;0.00751948229068939!GO:0016859;cis-trans isomerase activity;0.00753151557734654!GO:0000209;protein polyubiquitination;0.00769096654795179!GO:0008186;RNA-dependent ATPase activity;0.00788316447439621!GO:0033116;ER-Golgi intermediate compartment membrane;0.00789193868976401!GO:0019783;small conjugating protein-specific protease activity;0.00805054431899981!GO:0001726;ruffle;0.00841773637007506!GO:0045892;negative regulation of transcription, DNA-dependent;0.00851711592982438!GO:0030663;COPI coated vesicle membrane;0.00869923163315695!GO:0030126;COPI vesicle coat;0.00869923163315695!GO:0006974;response to DNA damage stimulus;0.00894665789364483!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00897538277021086!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00899836678455949!GO:0042254;ribosome biogenesis and assembly;0.00903952774338724!GO:0005905;coated pit;0.00907548506294039!GO:0030384;phosphoinositide metabolic process;0.0091510094155826!GO:0008601;protein phosphatase type 2A regulator activity;0.00920803313330608!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00946060099741103!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00946060099741103!GO:0016050;vesicle organization and biogenesis;0.00991441477860279!GO:0004843;ubiquitin-specific protease activity;0.0100723197360992!GO:0009117;nucleotide metabolic process;0.0104462618656833!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0104517965767289!GO:0005938;cell cortex;0.0105685888350157!GO:0006401;RNA catabolic process;0.0107872949832843!GO:0006470;protein amino acid dephosphorylation;0.0111102928597597!GO:0035257;nuclear hormone receptor binding;0.0112123077831161!GO:0004221;ubiquitin thiolesterase activity;0.0112274666959652!GO:0005307;choline:sodium symporter activity;0.0120258790919374!GO:0008292;acetylcholine biosynthetic process;0.0120258790919374!GO:0042578;phosphoric ester hydrolase activity;0.0121059462704472!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121746160125353!GO:0015002;heme-copper terminal oxidase activity;0.0121746160125353!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121746160125353!GO:0004129;cytochrome-c oxidase activity;0.0121746160125353!GO:0031901;early endosome membrane;0.0125602354487603!GO:0000902;cell morphogenesis;0.0127195706176385!GO:0032989;cellular structure morphogenesis;0.0127195706176385!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0127682907459513!GO:0005815;microtubule organizing center;0.013194597266056!GO:0008022;protein C-terminus binding;0.013269023826618!GO:0006892;post-Golgi vesicle-mediated transport;0.0136011827102078!GO:0048487;beta-tubulin binding;0.0136011827102078!GO:0003746;translation elongation factor activity;0.0136974427866391!GO:0000059;protein import into nucleus, docking;0.0143224358794883!GO:0030658;transport vesicle membrane;0.0146962796661223!GO:0005885;Arp2/3 protein complex;0.015071014260351!GO:0051252;regulation of RNA metabolic process;0.015071014260351!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0152105630690565!GO:0045047;protein targeting to ER;0.0152105630690565!GO:0006405;RNA export from nucleus;0.0153483236589639!GO:0031123;RNA 3'-end processing;0.0155395198390523!GO:0006091;generation of precursor metabolites and energy;0.0157587848717881!GO:0030641;cellular hydrogen ion homeostasis;0.0158517515810288!GO:0008286;insulin receptor signaling pathway;0.0160183369529347!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0162271293441064!GO:0005788;endoplasmic reticulum lumen;0.0166993813164749!GO:0043021;ribonucleoprotein binding;0.0175628816304517!GO:0009165;nucleotide biosynthetic process;0.0179481770386938!GO:0000118;histone deacetylase complex;0.0184280716340636!GO:0004298;threonine endopeptidase activity;0.0184842439069!GO:0006818;hydrogen transport;0.0185653905031611!GO:0008154;actin polymerization and/or depolymerization;0.0194142645720624!GO:0004004;ATP-dependent RNA helicase activity;0.0194142645720624!GO:0046489;phosphoinositide biosynthetic process;0.0196645364215747!GO:0005869;dynactin complex;0.0199198353577458!GO:0046474;glycerophospholipid biosynthetic process;0.0201365273704112!GO:0065004;protein-DNA complex assembly;0.0202475903685212!GO:0016563;transcription activator activity;0.0205458709494916!GO:0033673;negative regulation of kinase activity;0.0221564364361401!GO:0006469;negative regulation of protein kinase activity;0.0221564364361401!GO:0050811;GABA receptor binding;0.0222518451992819!GO:0030127;COPII vesicle coat;0.0223101796951052!GO:0012507;ER to Golgi transport vesicle membrane;0.0223101796951052!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0223101796951052!GO:0031902;late endosome membrane;0.0223327127442823!GO:0046488;phosphatidylinositol metabolic process;0.023053227388628!GO:0005100;Rho GTPase activator activity;0.023053227388628!GO:0008312;7S RNA binding;0.023229087621175!GO:0030660;Golgi-associated vesicle membrane;0.0232299183537754!GO:0051726;regulation of cell cycle;0.0233667513278089!GO:0043069;negative regulation of programmed cell death;0.0238717989700403!GO:0006916;anti-apoptosis;0.0238717989700403!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0238717989700403!GO:0004667;prostaglandin-D synthase activity;0.0238717989700403!GO:0050802;circadian sleep/wake cycle, sleep;0.0238717989700403!GO:0022410;circadian sleep/wake cycle process;0.0238717989700403!GO:0042749;regulation of circadian sleep/wake cycle;0.0238717989700403!GO:0001754;eye photoreceptor cell differentiation;0.0241679110810501!GO:0046467;membrane lipid biosynthetic process;0.0253215742435321!GO:0016363;nuclear matrix;0.0253419266279933!GO:0018196;peptidyl-asparagine modification;0.0254979149452495!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0254979149452495!GO:0043066;negative regulation of apoptosis;0.0257034873543652!GO:0015992;proton transport;0.0257829296163008!GO:0008180;signalosome;0.0259726187304556!GO:0005762;mitochondrial large ribosomal subunit;0.0261610922737256!GO:0000315;organellar large ribosomal subunit;0.0261610922737256!GO:0007040;lysosome organization and biogenesis;0.0265660139060155!GO:0000314;organellar small ribosomal subunit;0.0266576054690373!GO:0005763;mitochondrial small ribosomal subunit;0.0266576054690373!GO:0007033;vacuole organization and biogenesis;0.0269046416633022!GO:0030041;actin filament polymerization;0.0270552920775118!GO:0051287;NAD binding;0.0272024667535886!GO:0000074;regulation of progression through cell cycle;0.0282358740827167!GO:0030134;ER to Golgi transport vesicle;0.0287511542592123!GO:0006661;phosphatidylinositol biosynthetic process;0.0289734691575316!GO:0003711;transcription elongation regulator activity;0.0295582386128562!GO:0019902;phosphatase binding;0.0295815358251255!GO:0030119;AP-type membrane coat adaptor complex;0.0299352246924235!GO:0005774;vacuolar membrane;0.0301278796215639!GO:0019894;kinesin binding;0.0302729921641786!GO:0005099;Ras GTPase activator activity;0.0311429480741466!GO:0032259;methylation;0.0312553456321708!GO:0007265;Ras protein signal transduction;0.0326937504967477!GO:0030027;lamellipodium;0.0340098006312341!GO:0016566;specific transcriptional repressor activity;0.0340122872677953!GO:0007019;microtubule depolymerization;0.0344884298410284!GO:0051348;negative regulation of transferase activity;0.0363465756985433!GO:0019887;protein kinase regulator activity;0.0368056938691626!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0368056938691626!GO:0016788;hydrolase activity, acting on ester bonds;0.0368889662032637!GO:0004059;aralkylamine N-acetyltransferase activity;0.0372862294087431!GO:0005868;cytoplasmic dynein complex;0.0375859232020416!GO:0030131;clathrin adaptor complex;0.037593508563055!GO:0006281;DNA repair;0.0378310757795475!GO:0016787;hydrolase activity;0.038132108530641!GO:0016272;prefoldin complex;0.0388925042643672!GO:0032287;myelin maintenance in the peripheral nervous system;0.0394258921807498!GO:0032838;cell projection cytoplasm;0.0394258921807498!GO:0033081;regulation of T cell differentiation in the thymus;0.0394258921807498!GO:0043217;myelin maintenance;0.0394258921807498!GO:0060087;relaxation of vascular smooth muscle;0.0394258921807498!GO:0032839;dendrite cytoplasm;0.0394258921807498!GO:0006376;mRNA splice site selection;0.039438937642714!GO:0000389;nuclear mRNA 3'-splice site recognition;0.039438937642714!GO:0000015;phosphopyruvate hydratase complex;0.0395352330736752!GO:0004634;phosphopyruvate hydratase activity;0.0395352330736752!GO:0031371;ubiquitin conjugating enzyme complex;0.0398288931575349!GO:0007030;Golgi organization and biogenesis;0.0402663245003442!GO:0048499;synaptic vesicle membrane organization and biogenesis;0.0402934764687563!GO:0030285;integral to synaptic vesicle membrane;0.0402934764687563!GO:0006611;protein export from nucleus;0.0405982963792401!GO:0035258;steroid hormone receptor binding;0.0407153081004173!GO:0035035;histone acetyltransferase binding;0.0409093040118!GO:0043414;biopolymer methylation;0.0409093040118!GO:0006350;transcription;0.0412919223898591!GO:0006383;transcription from RNA polymerase III promoter;0.0417168861156342!GO:0000287;magnesium ion binding;0.0418036690783812!GO:0042158;lipoprotein biosynthetic process;0.0418303106944179!GO:0012506;vesicle membrane;0.0418303106944179!GO:0030911;TPR domain binding;0.0424885148722613!GO:0015278;calcium-release channel activity;0.0427847659048564!GO:0007004;telomere maintenance via telomerase;0.0427847659048564!GO:0006595;polyamine metabolic process;0.0429545822967763!GO:0051540;metal cluster binding;0.0432957048241449!GO:0051536;iron-sulfur cluster binding;0.0432957048241449!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0432957048241449!GO:0040008;regulation of growth;0.044199054343452!GO:0043488;regulation of mRNA stability;0.0449390936028574!GO:0043487;regulation of RNA stability;0.0449390936028574!GO:0005545;phosphatidylinositol binding;0.045342386496263!GO:0030176;integral to endoplasmic reticulum membrane;0.0453436516134868!GO:0008270;zinc ion binding;0.046188597312118!GO:0000339;RNA cap binding;0.0478569527789747!GO:0006672;ceramide metabolic process;0.0484584003676488!GO:0004470;malic enzyme activity;0.0486008703517783!GO:0030742;GTP-dependent protein binding;0.0491579834143766!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0499083208315847
|sample_id=10179
|sample_id=10179
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=pineal gland
|sample_tissue=pineal gland
|top_motifs=CRX:7.63400496955;VSX1,2:4.5074497961;RORA:4.21378026272;LHX3,4:3.49931685646;PRRX1,2:2.78010387019;POU6F1:2.70112901351;HOX{A6,A7,B6,B7}:2.68603105882;JUN:2.68047529232;GCM1,2:2.6241858744;ALX1:2.4523895107;AHR_ARNT_ARNT2:2.36636258528;ZFP161:2.34901007233;FOXP3:2.28273664396;DBP:2.25161595797;REST:2.19236301295;MED-1{core}:2.16741077361;GFI1B:1.96873519887;RREB1:1.96864005446;ATF2:1.95639450437;MYFfamily:1.93106506851;HOXA9_MEIS1:1.86318055969;CUX2:1.83532672423;NANOG:1.83151971163;ESRRA:1.82502395656;GFI1:1.82103256524;HBP1_HMGB_SSRP1_UBTF:1.79441511424;POU3F1..4:1.77151251612;HOX{A4,D4}:1.72359006749;EGR1..3:1.71955423768;TGIF1:1.71942379746;CREB1:1.67442629407;ZBTB6:1.65222032974;PATZ1:1.60520887218;ADNP_IRX_SIX_ZHX:1.52183906775;MTF1:1.50371166872;MYOD1:1.4998681021;ALX4:1.46964977428;ATF5_CREB3:1.4268562334;BREu{core}:1.4117366152;NRF1:1.30342089226;NKX3-2:1.30175910774;T:1.29480121273;TFAP2B:1.26275779709;HIC1:1.26257234352;MZF1:1.26249190931;PRDM1:1.19806619276;FOXN1:1.19606948389;FOXM1:1.19407846589;GTF2I:1.17440347934;ATF4:1.17142254756;MAZ:1.16113021308;SOX2:1.08102996248;SOX17:1.0634564858;FOX{D1,D2}:1.05161346931;RFX1:1.04981402523;ATF6:1.02114036697;LMO2:0.969437142584;GATA4:0.958301541425;PAX1,9:0.936036469618;IKZF2:0.934318263215;NHLH1,2:0.927593061642;AR:0.924652079477;GATA6:0.904027420859;SREBF1,2:0.867043701666;YY1:0.848897614683;PAX3,7:0.847959365042;BPTF:0.838476329328;RBPJ:0.8296535862;PITX1..3:0.81619098444;PAX6:0.805494303839;SMAD1..7,9:0.802362558396;GTF2A1,2:0.790107846432;CDC5L:0.778387980157;OCT4_SOX2{dimer}:0.776329628919;PPARG:0.755541062484;RFX2..5_RFXANK_RFXAP:0.732327880797;MEF2{A,B,C,D}:0.728830639763;NKX2-3_NKX2-5:0.634274731929;TLX1..3_NFIC{dimer}:0.624293410545;NR1H4:0.565380431827;ZBTB16:0.563192284092;MTE{core}:0.553251123967;PAX5:0.546490300398;SOX5:0.537520908559;TFAP2{A,C}:0.529188302648;SP1:0.520669964651;NFE2L1:0.506121105623;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.454729078553;NFIX:0.439419470527;XBP1:0.408198797648;FOXA2:0.394507519013;KLF4:0.386415557886;HIF1A:0.373601824071;TAL1_TCF{3,4,12}:0.365852659021;FOXL1:0.288915975396;ZNF143:0.251033603309;NKX2-1,4:0.244703991825;SPZ1:0.235702112469;EBF1:0.221619094865;ZIC1..3:0.219944715626;SOX{8,9,10}:0.194412230543;GZF1:0.186716398881;NKX6-1,2:0.148329418562;NFE2L2:0.141600937748;STAT1,3:0.140191180568;ONECUT1,2:0.138044465924;ARID5B:0.136307311195;ZEB1:0.126271146149;NFIL3:0.124416939545;NFY{A,B,C}:0.0992891735508;POU5F1:0.0979231896868;STAT5{A,B}:0.0865516378458;PAX8:0.0683854253228;PAX2:0.0651743669781;EVI1:0.0620436517341;NR5A1,2:0.0612494045076;FOX{I1,J2}:0.0463362983078;RXR{A,B,G}:-0.00235491334097;TFCP2:-0.00945384351973;FOXQ1:-0.0826027191667;ZNF423:-0.0931437851861;FOXP1:-0.104955282254;HMX1:-0.107251097169;NFE2:-0.108287510892;HAND1,2:-0.176579087719;HNF1A:-0.180756212415;LEF1_TCF7_TCF7L1,2:-0.185479420763;MYBL2:-0.193713145941;PAX4:-0.199912584392;EP300:-0.223363500727;PBX1:-0.256460748342;TFDP1:-0.261954567886;TLX2:-0.265389156694;PDX1:-0.270453566949;SNAI1..3:-0.271318820456;FOSL2:-0.303285571632;NKX3-1:-0.318372189974;ELK1,4_GABP{A,B1}:-0.369996404261;IRF1,2:-0.382763213312;NFATC1..3:-0.389659462649;CDX1,2,4:-0.412150148311;FOXO1,3,4:-0.428979513089;CEBPA,B_DDIT3:-0.436861163524;NANOG{mouse}:-0.446838720482;NKX2-2,8:-0.4629796575;MAFB:-0.464988189314;HSF1,2:-0.478665012232;FOX{F1,F2,J1}:-0.493987550917;IKZF1:-0.513430289971;GLI1..3:-0.529267658606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.529753625571;IRF7:-0.538072334972;NR3C1:-0.565317163823;AIRE:-0.598697799083;BACH2:-0.603338671177;XCPE1{core}:-0.605117074509;ZNF384:-0.613099650914;FOS_FOS{B,L1}_JUN{B,D}:-0.623228819024;SPI1:-0.641693685039;HMGA1,2:-0.656656483417;TEAD1:-0.65824162909;STAT2,4,6:-0.692984463097;bHLH_family:-0.696545115733;UFEwm:-0.700970263944;SPIB:-0.70436133097;TOPORS:-0.720955495925;HLF:-0.724588364253;HNF4A_NR2F1,2:-0.761673192304;NFKB1_REL_RELA:-0.778278198632;TBX4,5:-0.785811221686;SRF:-0.819039955329;DMAP1_NCOR{1,2}_SMARC:-0.846352875851;RXRA_VDR{dimer}:-0.8511316588;POU1F1:-0.861937836879;ETS1,2:-0.884281796178;TFAP4:-0.964106524377;TBP:-0.970841638744;TP53:-1.00695355772;ELF1,2,4:-1.2013294548;MYB:-1.23203987002;POU2F1..3:-1.23628898389;TEF:-1.24171973727;ESR1:-1.24211364206;RUNX1..3:-1.27075544692;E2F1..5:-1.31540358582;HOX{A5,B5}:-1.45774914231;NR6A1:-1.6051576633;ZNF238:-1.76140018488;ZNF148:-1.99002475277;FOXD3:-2.02200911887;EN1,2:-2.48078459305;HES1:-3.16738939215
|top_motifs=CRX:7.63400496955;VSX1,2:4.5074497961;RORA:4.21378026272;LHX3,4:3.49931685646;PRRX1,2:2.78010387019;POU6F1:2.70112901351;HOX{A6,A7,B6,B7}:2.68603105882;JUN:2.68047529232;GCM1,2:2.6241858744;ALX1:2.4523895107;AHR_ARNT_ARNT2:2.36636258528;ZFP161:2.34901007233;FOXP3:2.28273664396;DBP:2.25161595797;REST:2.19236301295;MED-1{core}:2.16741077361;GFI1B:1.96873519887;RREB1:1.96864005446;ATF2:1.95639450437;MYFfamily:1.93106506851;HOXA9_MEIS1:1.86318055969;CUX2:1.83532672423;NANOG:1.83151971163;ESRRA:1.82502395656;GFI1:1.82103256524;HBP1_HMGB_SSRP1_UBTF:1.79441511424;POU3F1..4:1.77151251612;HOX{A4,D4}:1.72359006749;EGR1..3:1.71955423768;TGIF1:1.71942379746;CREB1:1.67442629407;ZBTB6:1.65222032974;PATZ1:1.60520887218;ADNP_IRX_SIX_ZHX:1.52183906775;MTF1:1.50371166872;MYOD1:1.4998681021;ALX4:1.46964977428;ATF5_CREB3:1.4268562334;BREu{core}:1.4117366152;NRF1:1.30342089226;NKX3-2:1.30175910774;T:1.29480121273;TFAP2B:1.26275779709;HIC1:1.26257234352;MZF1:1.26249190931;PRDM1:1.19806619276;FOXN1:1.19606948389;FOXM1:1.19407846589;GTF2I:1.17440347934;ATF4:1.17142254756;MAZ:1.16113021308;SOX2:1.08102996248;SOX17:1.0634564858;FOX{D1,D2}:1.05161346931;RFX1:1.04981402523;ATF6:1.02114036697;LMO2:0.969437142584;GATA4:0.958301541425;PAX1,9:0.936036469618;IKZF2:0.934318263215;NHLH1,2:0.927593061642;AR:0.924652079477;GATA6:0.904027420859;SREBF1,2:0.867043701666;YY1:0.848897614683;PAX3,7:0.847959365042;BPTF:0.838476329328;RBPJ:0.8296535862;PITX1..3:0.81619098444;PAX6:0.805494303839;SMAD1..7,9:0.802362558396;GTF2A1,2:0.790107846432;CDC5L:0.778387980157;OCT4_SOX2{dimer}:0.776329628919;PPARG:0.755541062484;RFX2..5_RFXANK_RFXAP:0.732327880797;MEF2{A,B,C,D}:0.728830639763;NKX2-3_NKX2-5:0.634274731929;TLX1..3_NFIC{dimer}:0.624293410545;NR1H4:0.565380431827;ZBTB16:0.563192284092;MTE{core}:0.553251123967;PAX5:0.546490300398;SOX5:0.537520908559;TFAP2{A,C}:0.529188302648;SP1:0.520669964651;NFE2L1:0.506121105623;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.454729078553;NFIX:0.439419470527;XBP1:0.408198797648;FOXA2:0.394507519013;KLF4:0.386415557886;HIF1A:0.373601824071;TAL1_TCF{3,4,12}:0.365852659021;FOXL1:0.288915975396;ZNF143:0.251033603309;NKX2-1,4:0.244703991825;SPZ1:0.235702112469;EBF1:0.221619094865;ZIC1..3:0.219944715626;SOX{8,9,10}:0.194412230543;GZF1:0.186716398881;NKX6-1,2:0.148329418562;NFE2L2:0.141600937748;STAT1,3:0.140191180568;ONECUT1,2:0.138044465924;ARID5B:0.136307311195;ZEB1:0.126271146149;NFIL3:0.124416939545;NFY{A,B,C}:0.0992891735508;POU5F1:0.0979231896868;STAT5{A,B}:0.0865516378458;PAX8:0.0683854253228;PAX2:0.0651743669781;EVI1:0.0620436517341;NR5A1,2:0.0612494045076;FOX{I1,J2}:0.0463362983078;RXR{A,B,G}:-0.00235491334097;TFCP2:-0.00945384351973;FOXQ1:-0.0826027191667;ZNF423:-0.0931437851861;FOXP1:-0.104955282254;HMX1:-0.107251097169;NFE2:-0.108287510892;HAND1,2:-0.176579087719;HNF1A:-0.180756212415;LEF1_TCF7_TCF7L1,2:-0.185479420763;MYBL2:-0.193713145941;PAX4:-0.199912584392;EP300:-0.223363500727;PBX1:-0.256460748342;TFDP1:-0.261954567886;TLX2:-0.265389156694;PDX1:-0.270453566949;SNAI1..3:-0.271318820456;FOSL2:-0.303285571632;NKX3-1:-0.318372189974;ELK1,4_GABP{A,B1}:-0.369996404261;IRF1,2:-0.382763213312;NFATC1..3:-0.389659462649;CDX1,2,4:-0.412150148311;FOXO1,3,4:-0.428979513089;CEBPA,B_DDIT3:-0.436861163524;NANOG{mouse}:-0.446838720482;NKX2-2,8:-0.4629796575;MAFB:-0.464988189314;HSF1,2:-0.478665012232;FOX{F1,F2,J1}:-0.493987550917;IKZF1:-0.513430289971;GLI1..3:-0.529267658606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.529753625571;IRF7:-0.538072334972;NR3C1:-0.565317163823;AIRE:-0.598697799083;BACH2:-0.603338671177;XCPE1{core}:-0.605117074509;ZNF384:-0.613099650914;FOS_FOS{B,L1}_JUN{B,D}:-0.623228819024;SPI1:-0.641693685039;HMGA1,2:-0.656656483417;TEAD1:-0.65824162909;STAT2,4,6:-0.692984463097;bHLH_family:-0.696545115733;UFEwm:-0.700970263944;SPIB:-0.70436133097;TOPORS:-0.720955495925;HLF:-0.724588364253;HNF4A_NR2F1,2:-0.761673192304;NFKB1_REL_RELA:-0.778278198632;TBX4,5:-0.785811221686;SRF:-0.819039955329;DMAP1_NCOR{1,2}_SMARC:-0.846352875851;RXRA_VDR{dimer}:-0.8511316588;POU1F1:-0.861937836879;ETS1,2:-0.884281796178;TFAP4:-0.964106524377;TBP:-0.970841638744;TP53:-1.00695355772;ELF1,2,4:-1.2013294548;MYB:-1.23203987002;POU2F1..3:-1.23628898389;TEF:-1.24171973727;ESR1:-1.24211364206;RUNX1..3:-1.27075544692;E2F1..5:-1.31540358582;HOX{A5,B5}:-1.45774914231;NR6A1:-1.6051576633;ZNF238:-1.76140018488;ZNF148:-1.99002475277;FOXD3:-2.02200911887;EN1,2:-2.48078459305;HES1:-3.16738939215
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10179-103C8;search_select_hide=table117:FF:10179-103C8
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:pineal gland - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13804
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepineal gland
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005293
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13804 CAGE DRX008706 DRR009578
Accession ID Hg19

Library idBAMCTSS
CNhs13804 DRZ001003 DRZ002388
Accession ID Hg38

Library idBAMCTSS
CNhs13804 DRZ012353 DRZ013738
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.447
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.426
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.113
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.186
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.216
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.497
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.332
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0178
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0.956
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.811
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0247
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.723
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.186
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.929
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.316
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0908
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum1.189
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.541
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.186
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.186
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.186
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal1.319
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13804

Jaspar motifP-value
MA0002.20.0245
MA0003.10.302
MA0004.10.354
MA0006.10.286
MA0007.10.227
MA0009.10.387
MA0014.10.45
MA0017.10.0135
MA0018.24.76074e-7
MA0019.10.618
MA0024.10.393
MA0025.10.23
MA0027.10.791
MA0028.10.196
MA0029.10.906
MA0030.10.581
MA0031.10.827
MA0035.20.323
MA0038.10.113
MA0039.20.162
MA0040.10.981
MA0041.10.423
MA0042.10.505
MA0043.10.253
MA0046.10.199
MA0047.20.0521
MA0048.10.0643
MA0050.10.00737
MA0051.10.0337
MA0052.10.0305
MA0055.10.0153
MA0057.10.664
MA0058.10.269
MA0059.10.023
MA0060.10.162
MA0061.10.00783
MA0062.20.0131
MA0065.20.00345
MA0066.10.145
MA0067.10.129
MA0068.10.576
MA0069.10.782
MA0070.10.635
MA0071.10.635
MA0072.10.156
MA0073.10.333
MA0074.10.559
MA0076.10.558
MA0077.10.73
MA0078.10.767
MA0079.20.882
MA0080.25.67053e-10
MA0081.10.0465
MA0083.10.139
MA0084.10.302
MA0087.10.824
MA0088.10.0933
MA0090.10.226
MA0091.10.526
MA0092.10.27
MA0093.10.401
MA0099.23.91547e-7
MA0100.10.958
MA0101.10.0043
MA0102.20.141
MA0103.10.287
MA0104.20.34
MA0105.10.00449
MA0106.10.0258
MA0107.10.00362
MA0108.20.536
MA0111.10.429
MA0112.20.00538
MA0113.10.124
MA0114.10.0121
MA0115.10.963
MA0116.10.00599
MA0117.10.824
MA0119.10.0589
MA0122.10.481
MA0124.10.815
MA0125.10.191
MA0131.10.924
MA0135.15.08768e-4
MA0136.11.55569e-10
MA0137.20.316
MA0138.20.37
MA0139.10.461
MA0140.10.312
MA0141.10.0851
MA0142.10.786
MA0143.10.643
MA0144.10.0508
MA0145.10.312
MA0146.10.0146
MA0147.10.201
MA0148.10.0189
MA0149.10.104
MA0150.10.0398
MA0152.10.686
MA0153.10.42
MA0154.10.0281
MA0155.10.591
MA0156.13.22759e-8
MA0157.10.189
MA0159.10.0592
MA0160.10.434
MA0162.10.0517
MA0163.14.97684e-5
MA0164.10.464
MA0258.10.0923
MA0259.10.525



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13804

Novel motifP-value
10.0775
100.0327
1000.18
1010.926
1020.92
1030.0847
1040.213
1050.786
1060.0197
1070.0371
1080.924
1090.00657
110.024
1100.0426
1110.0194
1120.969
1130.565
1140.344
1150.696
1160.39
1170.00925
1180.0153
1190.175
120.981
1200.104
1210.346
1220.793
1230.217
1240.703
1250.544
1260.287
1270.949
1280.194
1290.347
130.00639
1300.266
1310.0417
1320.581
1330.0173
1340.794
1350.507
1360.0143
1370.948
1380.499
1390.618
140.985
1400.544
1410.569
1420.567
1430.29
1440.512
1450.0582
1460.154
1470.153
1480.0936
1490.204
150.0482
1500.18
1510.457
1520.0314
1530.665
1540.864
1550.633
1560.979
1570.441
1580.0269
1590.029
160.0939
1600.0303
1610.0742
1620.716
1630.794
1640.00648
1650.0329
1660.966
1670.356
1680.222
1690.0135
170.071
180.184
190.264
20.681
200.184
210.109
220.271
230.236
240.0383
250.459
261.22735e-4
270.83
280.801
290.00817
30.0406
300.677
310.918
320.0363
330.0625
340.742
350.955
360.126
370.0601
380.319
390.235
40.836
400.0304
410.251
420.294
430.121
440.114
450.765
460.0465
470.0638
480.0456
490.17
50.358
500.25
510.34
520.545
530.668
540.385
550.512
560.448
570.143
580.335
590.0747
60.553
600.112
610.0451
620.303
630.0487
640.301
650.168
660.179
670.356
680.332
690.192
70.166
700.00577
710.00428
720.518
730.0364
740.846
750.0285
760.227
770.157
780.0589
790.26
80.0137
800.871
810.24
820.867
830.229
840.335
850.305
860.466
873.04717e-4
880.959
890.367
90.793
900.0905
910.775
920.584
930.833
940.0553
950.0336
960.639
970.774
980.326
990.197



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13804


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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