FF:11365-117I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005726 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005726 | ||
|accession_numbers=CAGE;DRX008499;DRR009371;DRZ000796;DRZ002181;DRZ012146;DRZ013531 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037265;DRR041631;DRZ007273 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002591 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000174 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11365-117I6 | |id=FF:11365-117I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000174 | ||
|is_obsolete= | |||
|library_id=CNhs11989 | |||
|library_id_phase_based=2:CNhs11989 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11365 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GAGTGG.11365 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11365 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GAGTGG.11365 | |||
|name=Smooth Muscle Cells - Pulmonary Artery, donor2 | |name=Smooth Muscle Cells - Pulmonary Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11989,LSID836,release011,COMPLETED | |profile_hcage=CNhs11989,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.168078122348702,0,0.545486016085733,0.241637226514935,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796582386434789,0,0,0,0,0,0.544530712167412,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.808608036778342,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0675162771150935,0,0.231403791192483,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.328396152435088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12747646128945,0,0,0,-0.0584468268118252,0.110046901521866,0,0.513239225317154,0,0,-0.0980353512377064,0.025720875416649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.611756804548941,0.872249928313946,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA352-R10a | |rna_catalog_number=CA352-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I6 | |rna_tube_id=117I6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.GAGTGG | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.08609692977129e-225!GO:0005737;cytoplasm;4.36845314781869e-189!GO:0044444;cytoplasmic part;1.63377629810811e-142!GO:0043226;organelle;9.01567786079328e-140!GO:0043229;intracellular organelle;1.6191699465837e-139!GO:0043231;intracellular membrane-bound organelle;1.39458317428294e-137!GO:0043227;membrane-bound organelle;2.91782229348834e-137!GO:0044422;organelle part;1.37760982334798e-115!GO:0044446;intracellular organelle part;2.79421822560771e-114!GO:0032991;macromolecular complex;2.3858295196447e-78!GO:0005515;protein binding;2.36278408293634e-73!GO:0030529;ribonucleoprotein complex;5.15370313716053e-68!GO:0005739;mitochondrion;3.32761120700844e-65!GO:0044238;primary metabolic process;7.99827721538829e-62!GO:0044237;cellular metabolic process;8.78646472314051e-62!GO:0043233;organelle lumen;1.22928851813763e-54!GO:0031974;membrane-enclosed lumen;1.22928851813763e-54!GO:0031090;organelle membrane;4.37575419752235e-53!GO:0043170;macromolecule metabolic process;7.88150407296885e-53!GO:0003723;RNA binding;2.29323152106176e-48!GO:0019538;protein metabolic process;4.31344345341123e-47!GO:0005840;ribosome;1.05335073892541e-46!GO:0044428;nuclear part;1.35279691986797e-46!GO:0006412;translation;2.57172273337639e-43!GO:0003735;structural constituent of ribosome;2.66988560387902e-42!GO:0044260;cellular macromolecule metabolic process;3.75343685877079e-42!GO:0044429;mitochondrial part;7.11010359281421e-42!GO:0005829;cytosol;1.87023262703409e-41!GO:0009058;biosynthetic process;3.02283033355839e-41!GO:0044267;cellular protein metabolic process;7.22666914023703e-41!GO:0043234;protein complex;7.04528926298699e-40!GO:0016043;cellular component organization and biogenesis;1.98361773900139e-38!GO:0044249;cellular biosynthetic process;3.1344980919019e-38!GO:0015031;protein transport;3.93214554351228e-37!GO:0009059;macromolecule biosynthetic process;5.05482135951707e-37!GO:0033279;ribosomal subunit;6.70007907397411e-37!GO:0031967;organelle envelope;9.44312619065245e-37!GO:0031975;envelope;2.08416828213331e-36!GO:0033036;macromolecule localization;3.630685483329e-36!GO:0045184;establishment of protein localization;4.23094239688083e-35!GO:0008104;protein localization;2.5599394694949e-34!GO:0005634;nucleus;3.23236397886814e-34!GO:0006396;RNA processing;1.34114818528233e-31!GO:0031981;nuclear lumen;1.23220793016069e-28!GO:0005740;mitochondrial envelope;1.47870184619644e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.50917272232158e-27!GO:0031966;mitochondrial membrane;4.18546664222948e-27!GO:0046907;intracellular transport;7.86876254178618e-27!GO:0065003;macromolecular complex assembly;7.47396708594947e-26!GO:0019866;organelle inner membrane;2.44635553754905e-25!GO:0006886;intracellular protein transport;5.69183248459041e-25!GO:0016071;mRNA metabolic process;9.12109691857067e-25!GO:0005743;mitochondrial inner membrane;5.42850325896011e-24!GO:0022607;cellular component assembly;8.56717537521144e-24!GO:0005783;endoplasmic reticulum;2.01434963879773e-23!GO:0006996;organelle organization and biogenesis;4.93958696792368e-23!GO:0012505;endomembrane system;1.10448802841379e-22!GO:0044445;cytosolic part;2.22322988504366e-22!GO:0008380;RNA splicing;2.11958184860027e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.46545377056493e-21!GO:0043228;non-membrane-bound organelle;2.59405058356958e-21!GO:0043232;intracellular non-membrane-bound organelle;2.59405058356958e-21!GO:0006119;oxidative phosphorylation;5.9850023316924e-21!GO:0043283;biopolymer metabolic process;5.9850023316924e-21!GO:0006397;mRNA processing;7.41456414704227e-21!GO:0044455;mitochondrial membrane part;3.39054277215474e-20!GO:0015934;large ribosomal subunit;7.0369592840771e-20!GO:0044432;endoplasmic reticulum part;6.0806822439511e-19!GO:0010467;gene expression;1.49228256704222e-18!GO:0005794;Golgi apparatus;1.93598620210505e-18!GO:0048770;pigment granule;2.85846880073379e-18!GO:0042470;melanosome;2.85846880073379e-18!GO:0015935;small ribosomal subunit;5.29123958798239e-18!GO:0006457;protein folding;2.77661817879824e-17!GO:0051641;cellular localization;2.77661817879824e-17!GO:0016462;pyrophosphatase activity;2.77661817879824e-17!GO:0005654;nucleoplasm;3.42380316180117e-17!GO:0051649;establishment of cellular localization;3.55587274631362e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.92443362485627e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.83115694811802e-17!GO:0031980;mitochondrial lumen;8.34162392017934e-17!GO:0005759;mitochondrial matrix;8.34162392017934e-17!GO:0005746;mitochondrial respiratory chain;1.59270751021142e-16!GO:0017111;nucleoside-triphosphatase activity;2.15179323990355e-16!GO:0005681;spliceosome;2.27676118568232e-16!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.70405599724038e-16!GO:0051186;cofactor metabolic process;4.23190416279343e-16!GO:0000166;nucleotide binding;1.93614875846919e-15!GO:0006259;DNA metabolic process;3.770753826768e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.0779569146056e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2943418481649e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.92411079448886e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.36797262979201e-14!GO:0003954;NADH dehydrogenase activity;2.36797262979201e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.36797262979201e-14!GO:0044451;nucleoplasm part;3.10718854001886e-14!GO:0008134;transcription factor binding;7.12858189695409e-14!GO:0006605;protein targeting;9.61373949439206e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.12545650527333e-13!GO:0044265;cellular macromolecule catabolic process;1.31995101796818e-13!GO:0043285;biopolymer catabolic process;2.24194030202454e-13!GO:0016874;ligase activity;2.40219157326245e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.68748146167542e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.73262280378826e-13!GO:0009057;macromolecule catabolic process;6.1580590840086e-13!GO:0005789;endoplasmic reticulum membrane;6.49140238746511e-13!GO:0005730;nucleolus;8.48133055502799e-13!GO:0022618;protein-RNA complex assembly;9.2623183104583e-13!GO:0044248;cellular catabolic process;1.02274126644336e-12!GO:0051082;unfolded protein binding;1.13819800593153e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.37490485287187e-12!GO:0045271;respiratory chain complex I;2.37490485287187e-12!GO:0005747;mitochondrial respiratory chain complex I;2.37490485287187e-12!GO:0016192;vesicle-mediated transport;2.57961693375621e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.72944853143413e-12!GO:0042773;ATP synthesis coupled electron transport;2.72944853143413e-12!GO:0016491;oxidoreductase activity;3.36730916628465e-12!GO:0005761;mitochondrial ribosome;3.8117430988558e-12!GO:0000313;organellar ribosome;3.8117430988558e-12!GO:0048193;Golgi vesicle transport;3.85172004636826e-12!GO:0006732;coenzyme metabolic process;4.96992944893663e-12!GO:0005793;ER-Golgi intermediate compartment;5.97453584033886e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.22554948192289e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;8.75091590543557e-12!GO:0006512;ubiquitin cycle;1.03856229583319e-11!GO:0007049;cell cycle;1.31365827457503e-11!GO:0008135;translation factor activity, nucleic acid binding;1.44141468479002e-11!GO:0044257;cellular protein catabolic process;1.59667052542635e-11!GO:0019941;modification-dependent protein catabolic process;1.64140304787554e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.64140304787554e-11!GO:0017076;purine nucleotide binding;1.83289148066046e-11!GO:0030163;protein catabolic process;3.32904225471974e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.54553740295269e-11!GO:0032553;ribonucleotide binding;3.59583801660258e-11!GO:0032555;purine ribonucleotide binding;3.59583801660258e-11!GO:0048523;negative regulation of cellular process;3.6764061489058e-11!GO:0009055;electron carrier activity;4.69140396616491e-11!GO:0012501;programmed cell death;2.58704943181908e-10!GO:0006915;apoptosis;6.43914287157557e-10!GO:0043412;biopolymer modification;6.98600710318717e-10!GO:0048519;negative regulation of biological process;2.12035509439763e-09!GO:0008219;cell death;2.1629500796011e-09!GO:0016265;death;2.1629500796011e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.37126423381044e-09!GO:0000375;RNA splicing, via transesterification reactions;2.37126423381044e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.37126423381044e-09!GO:0006163;purine nucleotide metabolic process;2.70558915290192e-09!GO:0009259;ribonucleotide metabolic process;2.87950655752207e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.89345811473196e-09!GO:0005635;nuclear envelope;3.22111728881913e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.28194157247745e-09!GO:0003743;translation initiation factor activity;3.79230089302188e-09!GO:0009150;purine ribonucleotide metabolic process;3.83144983445607e-09!GO:0006464;protein modification process;5.93364351141817e-09!GO:0042254;ribosome biogenesis and assembly;6.02909063725221e-09!GO:0003712;transcription cofactor activity;6.87272998628503e-09!GO:0006913;nucleocytoplasmic transport;7.54847262226836e-09!GO:0022402;cell cycle process;7.80566959410854e-09!GO:0030554;adenyl nucleotide binding;1.02810449091799e-08!GO:0005524;ATP binding;1.02891990508465e-08!GO:0005788;endoplasmic reticulum lumen;1.32697213219082e-08!GO:0031965;nuclear membrane;1.45985671149643e-08!GO:0030120;vesicle coat;1.49757172755192e-08!GO:0030662;coated vesicle membrane;1.49757172755192e-08!GO:0032559;adenyl ribonucleotide binding;1.51757789229491e-08!GO:0051169;nuclear transport;1.59615266608368e-08!GO:0006164;purine nucleotide biosynthetic process;1.64674953291114e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.85368558039691e-08!GO:0008565;protein transporter activity;1.91576686131296e-08!GO:0009056;catabolic process;1.95794362022004e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.31683920059458e-08!GO:0009060;aerobic respiration;2.64998439743066e-08!GO:0044431;Golgi apparatus part;2.7054224150841e-08!GO:0044453;nuclear membrane part;2.7054224150841e-08!GO:0009141;nucleoside triphosphate metabolic process;2.71656451165565e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.72636455816669e-08!GO:0016887;ATPase activity;3.90628615212055e-08!GO:0006413;translational initiation;4.02234326514726e-08!GO:0017038;protein import;4.14073154384299e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.16104776346536e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.16104776346536e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.17979638863593e-08!GO:0009260;ribonucleotide biosynthetic process;4.43701768190478e-08!GO:0006461;protein complex assembly;4.93850420408282e-08!GO:0015986;ATP synthesis coupled proton transport;5.41411542934974e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.41411542934974e-08!GO:0048475;coated membrane;6.19915815939658e-08!GO:0030117;membrane coat;6.19915815939658e-08!GO:0042623;ATPase activity, coupled;6.91157177380946e-08!GO:0009117;nucleotide metabolic process;7.26242714141304e-08!GO:0006446;regulation of translational initiation;8.21101384207004e-08!GO:0019829;cation-transporting ATPase activity;8.27783317891959e-08!GO:0006399;tRNA metabolic process;9.23121504832423e-08!GO:0045333;cellular respiration;9.87181629919546e-08!GO:0046034;ATP metabolic process;1.23981408782608e-07!GO:0051726;regulation of cell cycle;1.81637688376982e-07!GO:0051188;cofactor biosynthetic process;1.82374078373051e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.85794867832022e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.85794867832022e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.89896211135244e-07!GO:0006323;DNA packaging;1.90882193073633e-07!GO:0006091;generation of precursor metabolites and energy;1.96796839922074e-07!GO:0005768;endosome;2.36771879956811e-07!GO:0000074;regulation of progression through cell cycle;2.63691519077794e-07!GO:0031988;membrane-bound vesicle;2.63691519077794e-07!GO:0016787;hydrolase activity;2.66775527055073e-07!GO:0008639;small protein conjugating enzyme activity;2.74481280510762e-07!GO:0000278;mitotic cell cycle;2.78632312684479e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.79219802534419e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.79219802534419e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.83589629724525e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.19495950557306e-07!GO:0003924;GTPase activity;3.20886632823115e-07!GO:0016604;nuclear body;3.56153176275344e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.35889368300977e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.50396363239402e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.50396363239402e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.50396363239402e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.50396363239402e-07!GO:0065004;protein-DNA complex assembly;4.84200320802522e-07!GO:0043687;post-translational protein modification;5.28460655827792e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.85143799781275e-07!GO:0004842;ubiquitin-protein ligase activity;5.93321718761485e-07!GO:0043067;regulation of programmed cell death;6.4002294623325e-07!GO:0006754;ATP biosynthetic process;7.17316966773628e-07!GO:0006753;nucleoside phosphate metabolic process;7.17316966773628e-07!GO:0042981;regulation of apoptosis;7.20674934695379e-07!GO:0006974;response to DNA damage stimulus;8.03717603476432e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.98627769502924e-07!GO:0030532;small nuclear ribonucleoprotein complex;8.99460095938355e-07!GO:0005773;vacuole;9.16697548629615e-07!GO:0043038;amino acid activation;9.45190816652555e-07!GO:0006418;tRNA aminoacylation for protein translation;9.45190816652555e-07!GO:0043039;tRNA aminoacylation;9.45190816652555e-07!GO:0006333;chromatin assembly or disassembly;9.90059282174233e-07!GO:0019787;small conjugating protein ligase activity;1.00267081533175e-06!GO:0051187;cofactor catabolic process;1.0716100416149e-06!GO:0000139;Golgi membrane;1.18635376553314e-06!GO:0005643;nuclear pore;1.23466513238667e-06!GO:0051276;chromosome organization and biogenesis;1.27545515675765e-06!GO:0006099;tricarboxylic acid cycle;1.34843382863938e-06!GO:0046356;acetyl-CoA catabolic process;1.34843382863938e-06!GO:0044440;endosomal part;1.45521877256589e-06!GO:0010008;endosome membrane;1.45521877256589e-06!GO:0006334;nucleosome assembly;1.6904118043274e-06!GO:0043069;negative regulation of programmed cell death;1.6904118043274e-06!GO:0031410;cytoplasmic vesicle;1.69541535906231e-06!GO:0031982;vesicle;1.75487790222308e-06!GO:0006916;anti-apoptosis;2.04152658873708e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.14542330487155e-06!GO:0003676;nucleic acid binding;2.30819222731179e-06!GO:0031497;chromatin assembly;2.41194608198166e-06!GO:0065002;intracellular protein transport across a membrane;2.45841661869244e-06!GO:0043066;negative regulation of apoptosis;2.5899504981836e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.80740454036163e-06!GO:0004298;threonine endopeptidase activity;3.28897917563354e-06!GO:0051246;regulation of protein metabolic process;3.47275667506562e-06!GO:0009109;coenzyme catabolic process;3.47487572378557e-06!GO:0045786;negative regulation of progression through cell cycle;3.51976899746728e-06!GO:0016881;acid-amino acid ligase activity;3.56927517495393e-06!GO:0006084;acetyl-CoA metabolic process;4.12022441538888e-06!GO:0006260;DNA replication;4.18384469858353e-06!GO:0046930;pore complex;4.20610006899269e-06!GO:0009719;response to endogenous stimulus;4.39118782663884e-06!GO:0008361;regulation of cell size;4.83875918440907e-06!GO:0045259;proton-transporting ATP synthase complex;5.19538502183213e-06!GO:0006364;rRNA processing;5.80070344079945e-06!GO:0016049;cell growth;6.48115851381881e-06!GO:0005770;late endosome;7.0812403043197e-06!GO:0001558;regulation of cell growth;7.45124425868702e-06!GO:0016740;transferase activity;8.3905329182298e-06!GO:0006366;transcription from RNA polymerase II promoter;9.04420084749412e-06!GO:0048522;positive regulation of cellular process;9.13866628758954e-06!GO:0000323;lytic vacuole;1.06674264405925e-05!GO:0005764;lysosome;1.06674264405925e-05!GO:0005905;coated pit;1.13113325380172e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.28002516183652e-05!GO:0016072;rRNA metabolic process;1.31099827641211e-05!GO:0009108;coenzyme biosynthetic process;1.33555241680558e-05!GO:0006752;group transfer coenzyme metabolic process;1.35100275968293e-05!GO:0031252;leading edge;1.52701217913802e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.608496350656e-05!GO:0051170;nuclear import;1.64071729626175e-05!GO:0006606;protein import into nucleus;1.78235634781596e-05!GO:0031324;negative regulation of cellular metabolic process;1.78915120549435e-05!GO:0016779;nucleotidyltransferase activity;1.93720097187161e-05!GO:0007005;mitochondrion organization and biogenesis;2.20942275564515e-05!GO:0005762;mitochondrial large ribosomal subunit;2.35895511147298e-05!GO:0000315;organellar large ribosomal subunit;2.35895511147298e-05!GO:0005798;Golgi-associated vesicle;3.10231726207056e-05!GO:0006281;DNA repair;3.17391340396827e-05!GO:0019867;outer membrane;3.21121230859721e-05!GO:0051789;response to protein stimulus;3.26981242525159e-05!GO:0006986;response to unfolded protein;3.26981242525159e-05!GO:0003697;single-stranded DNA binding;3.44642455456029e-05!GO:0016607;nuclear speck;3.52906345523415e-05!GO:0016563;transcription activator activity;3.98218379414159e-05!GO:0031968;organelle outer membrane;4.11936368290839e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.71601572857518e-05!GO:0006793;phosphorus metabolic process;5.23592423716438e-05!GO:0006796;phosphate metabolic process;5.23592423716438e-05!GO:0005525;GTP binding;5.34462133629371e-05!GO:0045454;cell redox homeostasis;5.74879557262869e-05!GO:0000785;chromatin;5.77298341988223e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.85948410466108e-05!GO:0016564;transcription repressor activity;7.57851474324449e-05!GO:0016070;RNA metabolic process;7.7958109006973e-05!GO:0030029;actin filament-based process;8.40248262300103e-05!GO:0003714;transcription corepressor activity;8.44678428131362e-05!GO:0008654;phospholipid biosynthetic process;8.64501607755486e-05!GO:0030867;rough endoplasmic reticulum membrane;9.41247957061667e-05!GO:0044262;cellular carbohydrate metabolic process;0.000106030873262189!GO:0003713;transcription coactivator activity;0.000106384311792695!GO:0005048;signal sequence binding;0.000106768549829133!GO:0005741;mitochondrial outer membrane;0.000108473320185524!GO:0005667;transcription factor complex;0.000112581587294482!GO:0043623;cellular protein complex assembly;0.000112669372317511!GO:0009892;negative regulation of metabolic process;0.000119096252979423!GO:0016310;phosphorylation;0.000148171829208643!GO:0004386;helicase activity;0.000152244897974209!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000158176664386345!GO:0043566;structure-specific DNA binding;0.000170645023219762!GO:0000245;spliceosome assembly;0.000173054226780855!GO:0040008;regulation of growth;0.000193993313362322!GO:0008026;ATP-dependent helicase activity;0.000202083697872374!GO:0032561;guanyl ribonucleotide binding;0.000202373215444256!GO:0019001;guanyl nucleotide binding;0.000202373215444256!GO:0030176;integral to endoplasmic reticulum membrane;0.000204597495825333!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000222788859840237!GO:0015399;primary active transmembrane transporter activity;0.000222788859840237!GO:0016853;isomerase activity;0.000223165470393212!GO:0048518;positive regulation of biological process;0.000230776868089879!GO:0005694;chromosome;0.000254399498900835!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0002833967475711!GO:0000151;ubiquitin ligase complex;0.000297014105075577!GO:0006613;cotranslational protein targeting to membrane;0.00032896399926925!GO:0005769;early endosome;0.000380370812055427!GO:0007243;protein kinase cascade;0.000436969416441044!GO:0044427;chromosomal part;0.000437685185775674!GO:0006403;RNA localization;0.00044805035510898!GO:0016568;chromatin modification;0.000464250523467247!GO:0007067;mitosis;0.000510677345149603!GO:0006082;organic acid metabolic process;0.000511171082223268!GO:0050657;nucleic acid transport;0.000528939421867977!GO:0051236;establishment of RNA localization;0.000528939421867977!GO:0050658;RNA transport;0.000528939421867977!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000557252307266356!GO:0019752;carboxylic acid metabolic process;0.0005678514237647!GO:0030663;COPI coated vesicle membrane;0.000575079270619211!GO:0030126;COPI vesicle coat;0.000575079270619211!GO:0016044;membrane organization and biogenesis;0.000593976077809275!GO:0009165;nucleotide biosynthetic process;0.000601169570690756!GO:0000087;M phase of mitotic cell cycle;0.000609287703596558!GO:0019843;rRNA binding;0.000653488737418703!GO:0030133;transport vesicle;0.000747181811816232!GO:0022403;cell cycle phase;0.000765780219799567!GO:0016859;cis-trans isomerase activity;0.000773732434429373!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000776999610302089!GO:0005885;Arp2/3 protein complex;0.000814848841727524!GO:0000786;nucleosome;0.00082505971933805!GO:0030132;clathrin coat of coated pit;0.000864241638941542!GO:0051329;interphase of mitotic cell cycle;0.000938106759293341!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000956388452624115!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000956388452624115!GO:0030137;COPI-coated vesicle;0.000962875655725831!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000965290770820318!GO:0050794;regulation of cellular process;0.000984264741643725!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000998945330645292!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000998945330645292!GO:0008250;oligosaccharyl transferase complex;0.00103153915427438!GO:0043284;biopolymer biosynthetic process;0.00104779966666381!GO:0051920;peroxiredoxin activity;0.00105134117407921!GO:0030118;clathrin coat;0.00107151670136859!GO:0003899;DNA-directed RNA polymerase activity;0.00108722034346012!GO:0004576;oligosaccharyl transferase activity;0.00112615678138293!GO:0032446;protein modification by small protein conjugation;0.00115617459983187!GO:0003724;RNA helicase activity;0.00118295607475887!GO:0004177;aminopeptidase activity;0.00129075319219367!GO:0043681;protein import into mitochondrion;0.00132214047779036!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00133107697937526!GO:0016567;protein ubiquitination;0.00134187848554739!GO:0015630;microtubule cytoskeleton;0.00134187848554739!GO:0000314;organellar small ribosomal subunit;0.00134187848554739!GO:0005763;mitochondrial small ribosomal subunit;0.00134187848554739!GO:0030659;cytoplasmic vesicle membrane;0.00140624107494906!GO:0043492;ATPase activity, coupled to movement of substances;0.00149085100928546!GO:0005791;rough endoplasmic reticulum;0.00150104687062886!GO:0051252;regulation of RNA metabolic process;0.00150216465117764!GO:0030658;transport vesicle membrane;0.00150216465117764!GO:0016481;negative regulation of transcription;0.001505338716472!GO:0007050;cell cycle arrest;0.00153787765746312!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00155682845279157!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00156675758305962!GO:0006118;electron transport;0.0015924775325354!GO:0043021;ribonucleoprotein binding;0.00161414031719961!GO:0005813;centrosome;0.00187832168881026!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00190290547843731!GO:0019899;enzyme binding;0.00190439784858138!GO:0046474;glycerophospholipid biosynthetic process;0.00192629207260216!GO:0051427;hormone receptor binding;0.00195340172774859!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00204153614108365!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00204153614108365!GO:0044433;cytoplasmic vesicle part;0.00208632195785721!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00219651610077396!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00223446685643829!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00223446685643829!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00223446685643829!GO:0018196;peptidyl-asparagine modification;0.00227877869243224!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00227877869243224!GO:0008610;lipid biosynthetic process;0.00236774393408825!GO:0008092;cytoskeletal protein binding;0.00245347463543992!GO:0006612;protein targeting to membrane;0.00246241015015472!GO:0006509;membrane protein ectodomain proteolysis;0.00248220301881364!GO:0033619;membrane protein proteolysis;0.00248220301881364!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00262050254553391!GO:0043488;regulation of mRNA stability;0.00266163741464796!GO:0043487;regulation of RNA stability;0.00266163741464796!GO:0007264;small GTPase mediated signal transduction;0.00270217954365285!GO:0050662;coenzyme binding;0.00271614687763308!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00273113937125725!GO:0006979;response to oxidative stress;0.00300909420305796!GO:0065009;regulation of a molecular function;0.003088107578612!GO:0007010;cytoskeleton organization and biogenesis;0.00326842584202119!GO:0046483;heterocycle metabolic process;0.00346543664453692!GO:0006414;translational elongation;0.0035281098606575!GO:0035257;nuclear hormone receptor binding;0.00354510161620089!GO:0045941;positive regulation of transcription;0.00355125892264681!GO:0007006;mitochondrial membrane organization and biogenesis;0.00358471778045461!GO:0005815;microtubule organizing center;0.00368194867104581!GO:0051325;interphase;0.00400890191697594!GO:0051301;cell division;0.00400898780425283!GO:0006740;NADPH regeneration;0.00409235035276076!GO:0006098;pentose-phosphate shunt;0.00409235035276076!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00411152618629569!GO:0030660;Golgi-associated vesicle membrane;0.00411624109134959!GO:0030119;AP-type membrane coat adaptor complex;0.00417876334728499!GO:0030027;lamellipodium;0.00438328077802365!GO:0030145;manganese ion binding;0.00442177893996339!GO:0048468;cell development;0.00457114682004313!GO:0017166;vinculin binding;0.00470055879924527!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00476169509209027!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00476569689471209!GO:0030125;clathrin vesicle coat;0.00477300106444088!GO:0030665;clathrin coated vesicle membrane;0.00477300106444088!GO:0008154;actin polymerization and/or depolymerization;0.00493319226637416!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00516670177641594!GO:0015002;heme-copper terminal oxidase activity;0.00516670177641594!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00516670177641594!GO:0004129;cytochrome-c oxidase activity;0.00516670177641594!GO:0015992;proton transport;0.00519234527001869!GO:0006626;protein targeting to mitochondrion;0.00520627016449258!GO:0007040;lysosome organization and biogenesis;0.00530419513306978!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00535062114834155!GO:0051028;mRNA transport;0.00535062114834155!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00536353310321976!GO:0022890;inorganic cation transmembrane transporter activity;0.00564984966085577!GO:0012506;vesicle membrane;0.00580263348287924!GO:0048487;beta-tubulin binding;0.0060207904886859!GO:0000059;protein import into nucleus, docking;0.00609340759680312!GO:0007033;vacuole organization and biogenesis;0.00611542979820768!GO:0006818;hydrogen transport;0.00613942533766286!GO:0009967;positive regulation of signal transduction;0.0062166494270146!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00627619979885544!GO:0046467;membrane lipid biosynthetic process;0.00635110377741429!GO:0051287;NAD binding;0.00636310469817641!GO:0006778;porphyrin metabolic process;0.0064570888453462!GO:0033013;tetrapyrrole metabolic process;0.0064570888453462!GO:0008139;nuclear localization sequence binding;0.00649949114491447!GO:0008186;RNA-dependent ATPase activity;0.00654456946083017!GO:0008632;apoptotic program;0.00658595902396782!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00694872773679039!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00694872773679039!GO:0051168;nuclear export;0.00705295276668658!GO:0042802;identical protein binding;0.00706949842992312!GO:0030131;clathrin adaptor complex;0.00706949842992312!GO:0006595;polyamine metabolic process;0.00708223757004757!GO:0006891;intra-Golgi vesicle-mediated transport;0.00727713284753579!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00733835871293312!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00740787921714604!GO:0046489;phosphoinositide biosynthetic process;0.00755533546725665!GO:0045893;positive regulation of transcription, DNA-dependent;0.00758943026643215!GO:0046519;sphingoid metabolic process;0.00770510887459841!GO:0006950;response to stress;0.00817176719594994!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00903125273649195!GO:0030134;ER to Golgi transport vesicle;0.00903125273649195!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00946840456237973!GO:0031301;integral to organelle membrane;0.00950854305014222!GO:0006289;nucleotide-excision repair;0.00963453759971365!GO:0008047;enzyme activator activity;0.00966346838443956!GO:0033673;negative regulation of kinase activity;0.00987249608419524!GO:0006469;negative regulation of protein kinase activity;0.00987249608419524!GO:0005869;dynactin complex;0.0103238500795023!GO:0030041;actin filament polymerization;0.0103238500795023!GO:0003746;translation elongation factor activity;0.0105948886459094!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0107465682629259!GO:0043433;negative regulation of transcription factor activity;0.0109112430595511!GO:0006261;DNA-dependent DNA replication;0.0109112430595511!GO:0008243;plasminogen activator activity;0.0110649602085686!GO:0015631;tubulin binding;0.0111129697532159!GO:0042168;heme metabolic process;0.0111449851128702!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0116194781920592!GO:0031072;heat shock protein binding;0.0122144562272429!GO:0030127;COPII vesicle coat;0.0126576395439876!GO:0012507;ER to Golgi transport vesicle membrane;0.0126576395439876!GO:0051348;negative regulation of transferase activity;0.0130007490367458!GO:0001953;negative regulation of cell-matrix adhesion;0.0134972815653978!GO:0048037;cofactor binding;0.013966723868521!GO:0030308;negative regulation of cell growth;0.0142257375447573!GO:0006839;mitochondrial transport;0.0144265954391407!GO:0045792;negative regulation of cell size;0.0145203630616489!GO:0008033;tRNA processing;0.0146782163988748!GO:0004004;ATP-dependent RNA helicase activity;0.0146796266769668!GO:0003711;transcription elongation regulator activity;0.0147348868654035!GO:0006672;ceramide metabolic process;0.0147348868654035!GO:0006007;glucose catabolic process;0.014856775523777!GO:0031902;late endosome membrane;0.0149003363173065!GO:0048471;perinuclear region of cytoplasm;0.0149003363173065!GO:0022408;negative regulation of cell-cell adhesion;0.0165865199553117!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0166457379114798!GO:0016126;sterol biosynthetic process;0.0167751886467524!GO:0045045;secretory pathway;0.0173538204588102!GO:0000082;G1/S transition of mitotic cell cycle;0.0173538204588102!GO:0031529;ruffle organization and biogenesis;0.0183362104847529!GO:0031124;mRNA 3'-end processing;0.0184040119444585!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0185432549707677!GO:0005520;insulin-like growth factor binding;0.0187088451811742!GO:0005862;muscle thin filament tropomyosin;0.0189271153566893!GO:0003729;mRNA binding;0.0189271153566893!GO:0005774;vacuolar membrane;0.0191134899326646!GO:0051539;4 iron, 4 sulfur cluster binding;0.0191826596270375!GO:0000096;sulfur amino acid metabolic process;0.019650283273893!GO:0006520;amino acid metabolic process;0.0197769409555046!GO:0006402;mRNA catabolic process;0.0197923533799675!GO:0051128;regulation of cellular component organization and biogenesis;0.0198539890405622!GO:0031272;regulation of pseudopodium formation;0.0199559516591595!GO:0031269;pseudopodium formation;0.0199559516591595!GO:0031344;regulation of cell projection organization and biogenesis;0.0199559516591595!GO:0031268;pseudopodium organization and biogenesis;0.0199559516591595!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0199559516591595!GO:0031274;positive regulation of pseudopodium formation;0.0199559516591595!GO:0035035;histone acetyltransferase binding;0.0203524170791404!GO:0051540;metal cluster binding;0.0204357899202969!GO:0051536;iron-sulfur cluster binding;0.0204357899202969!GO:0006611;protein export from nucleus;0.0207440239877808!GO:0003684;damaged DNA binding;0.0207440239877808!GO:0019206;nucleoside kinase activity;0.0208762345293252!GO:0050789;regulation of biological process;0.0212121105156067!GO:0031589;cell-substrate adhesion;0.0213465831463799!GO:0048500;signal recognition particle;0.0213682355988933!GO:0006401;RNA catabolic process;0.0213968265321173!GO:0006779;porphyrin biosynthetic process;0.0213968265321173!GO:0033014;tetrapyrrole biosynthetic process;0.0213968265321173!GO:0007160;cell-matrix adhesion;0.0214463241397345!GO:0005684;U2-dependent spliceosome;0.0214858608273537!GO:0030032;lamellipodium biogenesis;0.0224249953285682!GO:0031418;L-ascorbic acid binding;0.0231634978627593!GO:0000049;tRNA binding;0.0235179010621625!GO:0051087;chaperone binding;0.0243705688720674!GO:0030880;RNA polymerase complex;0.0243705688720674!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0247593785436345!GO:0005100;Rho GTPase activator activity;0.0249783476655625!GO:0003756;protein disulfide isomerase activity;0.0251045300942807!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0251045300942807!GO:0006897;endocytosis;0.0255800773803544!GO:0010324;membrane invagination;0.0255800773803544!GO:0006383;transcription from RNA polymerase III promoter;0.0257376344101857!GO:0000279;M phase;0.0261919752557481!GO:0006790;sulfur metabolic process;0.0262599353116937!GO:0005586;collagen type III;0.0269509721595202!GO:0001666;response to hypoxia;0.0272512561434659!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0272512561434659!GO:0004784;superoxide dismutase activity;0.0272512561434659!GO:0006739;NADP metabolic process;0.0272568590155781!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0272962954005172!GO:0006807;nitrogen compound metabolic process;0.0275022998125572!GO:0005096;GTPase activator activity;0.029208489494781!GO:0045892;negative regulation of transcription, DNA-dependent;0.0293758602693766!GO:0006693;prostaglandin metabolic process;0.0296284556552797!GO:0006692;prostanoid metabolic process;0.0296284556552797!GO:0031625;ubiquitin protein ligase binding;0.0299073687530004!GO:0005832;chaperonin-containing T-complex;0.0300038554615674!GO:0008538;proteasome activator activity;0.0303629891046689!GO:0051059;NF-kappaB binding;0.0306713642141241!GO:0030128;clathrin coat of endocytic vesicle;0.0307578906032946!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0307578906032946!GO:0030122;AP-2 adaptor complex;0.0307578906032946!GO:0006458;'de novo' protein folding;0.0307578906032946!GO:0051084;'de novo' posttranslational protein folding;0.0307578906032946!GO:0051101;regulation of DNA binding;0.0307889762294011!GO:0051271;negative regulation of cell motility;0.0309821741536437!GO:0008147;structural constituent of bone;0.0310362038070293!GO:0007346;regulation of progression through mitotic cell cycle;0.0311482189885344!GO:0001726;ruffle;0.0312511526114444!GO:0000030;mannosyltransferase activity;0.0313333484757674!GO:0005581;collagen;0.0317423509850204!GO:0050811;GABA receptor binding;0.0319116461306799!GO:0043022;ribosome binding;0.0320775587395759!GO:0001527;microfibril;0.0325234181301036!GO:0007242;intracellular signaling cascade;0.0326735710691113!GO:0031543;peptidyl-proline dioxygenase activity;0.032837734049022!GO:0006497;protein amino acid lipidation;0.0329655886250551!GO:0045334;clathrin-coated endocytic vesicle;0.0329655886250551!GO:0016584;nucleosome positioning;0.0330089707375588!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0342458035520173!GO:0000209;protein polyubiquitination;0.0342458035520173!GO:0016272;prefoldin complex;0.0358094188508158!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0358094188508158!GO:0010257;NADH dehydrogenase complex assembly;0.0358094188508158!GO:0033108;mitochondrial respiratory chain complex assembly;0.0358094188508158!GO:0044437;vacuolar part;0.0360516292525621!GO:0006354;RNA elongation;0.0360894315616702!GO:0050178;phenylpyruvate tautomerase activity;0.0361738583043336!GO:0005637;nuclear inner membrane;0.0363058940699516!GO:0006783;heme biosynthetic process;0.0364660255788655!GO:0009303;rRNA transcription;0.0366765784132569!GO:0006650;glycerophospholipid metabolic process;0.0383888712333595!GO:0019318;hexose metabolic process;0.0391741159869938!GO:0000339;RNA cap binding;0.0399811691595663!GO:0006607;NLS-bearing substrate import into nucleus;0.0406745473460481!GO:0031901;early endosome membrane;0.0408474179517133!GO:0008283;cell proliferation;0.0408573097077825!GO:0000118;histone deacetylase complex;0.0411721407752946!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0415612163367911!GO:0006749;glutathione metabolic process;0.0421210680411408!GO:0019798;procollagen-proline dioxygenase activity;0.042339413762552!GO:0045926;negative regulation of growth;0.0424038247963459!GO:0005819;spindle;0.0424902653070198!GO:0046426;negative regulation of JAK-STAT cascade;0.0425595467926974!GO:0006695;cholesterol biosynthetic process;0.0430257361225916!GO:0045936;negative regulation of phosphate metabolic process;0.0432663876433528!GO:0008180;signalosome;0.0434943353501538!GO:0043086;negative regulation of catalytic activity;0.0439338216630419!GO:0005975;carbohydrate metabolic process;0.0439393581210635!GO:0044452;nucleolar part;0.0446353418799162!GO:0005996;monosaccharide metabolic process;0.0446353418799162!GO:0030521;androgen receptor signaling pathway;0.0452000083998016!GO:0040029;regulation of gene expression, epigenetic;0.0452000083998016!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0453709359721782!GO:0033043;regulation of organelle organization and biogenesis;0.0453709359721782!GO:0030833;regulation of actin filament polymerization;0.0454283846504271!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0458231157771954!GO:0045047;protein targeting to ER;0.0458231157771954!GO:0008312;7S RNA binding;0.045943412130275!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.046144326388313!GO:0000428;DNA-directed RNA polymerase complex;0.046144326388313!GO:0032940;secretion by cell;0.0467254697344334!GO:0030031;cell projection biogenesis;0.047114772506051!GO:0035258;steroid hormone receptor binding;0.0471954436775614!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0473791430805635!GO:0009308;amine metabolic process;0.0479668001572769!GO:0051098;regulation of binding;0.0481959379569913!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0483707311960532!GO:0008652;amino acid biosynthetic process;0.04846953093336!GO:0030911;TPR domain binding;0.0488074116645614!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0488082901017272!GO:0043407;negative regulation of MAP kinase activity;0.0495690647062122!GO:0003690;double-stranded DNA binding;0.0497440749903732 | |||
|sample_id=11365 | |sample_id=11365 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=pulmonary artery | |sample_tissue=pulmonary artery | ||
|top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966 | |top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11365-117I6;search_select_hide=table117:FF:11365-117I6 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Pulmonary Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11989 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11989
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11989
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.665 |
| 10 | 10 | 0.868 |
| 100 | 100 | 0.884 |
| 101 | 101 | 0.824 |
| 102 | 102 | 0.648 |
| 103 | 103 | 0.294 |
| 104 | 104 | 0.583 |
| 105 | 105 | 0.918 |
| 106 | 106 | 0.0229 |
| 107 | 107 | 0.0165 |
| 108 | 108 | 0.472 |
| 109 | 109 | 0.272 |
| 11 | 11 | 0.159 |
| 110 | 110 | 0.305 |
| 111 | 111 | 0.647 |
| 112 | 112 | 0.407 |
| 113 | 113 | 0.115 |
| 114 | 114 | 0.195 |
| 115 | 115 | 0.203 |
| 116 | 116 | 0.0462 |
| 117 | 117 | 0.937 |
| 118 | 118 | 0.739 |
| 119 | 119 | 0.45 |
| 12 | 12 | 0.795 |
| 120 | 120 | 0.755 |
| 121 | 121 | 0.837 |
| 122 | 122 | 0.218 |
| 123 | 123 | 0.141 |
| 124 | 124 | 0.6 |
| 125 | 125 | 0.872 |
| 126 | 126 | 0.597 |
| 127 | 127 | 0.709 |
| 128 | 128 | 0.0557 |
| 129 | 129 | 0.974 |
| 13 | 13 | 0.416 |
| 130 | 130 | 0.211 |
| 131 | 131 | 0.626 |
| 132 | 132 | 0.394 |
| 133 | 133 | 0.399 |
| 134 | 134 | 0.903 |
| 135 | 135 | 0.357 |
| 136 | 136 | 0.653 |
| 137 | 137 | 0.615 |
| 138 | 138 | 0.444 |
| 139 | 139 | 0.263 |
| 14 | 14 | 0.728 |
| 140 | 140 | 0.535 |
| 141 | 141 | 0.472 |
| 142 | 142 | 0.234 |
| 143 | 143 | 0.268 |
| 144 | 144 | 0.209 |
| 145 | 145 | 0.0965 |
| 146 | 146 | 0.182 |
| 147 | 147 | 0.206 |
| 148 | 148 | 0.892 |
| 149 | 149 | 0.0527 |
| 15 | 15 | 0.998 |
| 150 | 150 | 0.339 |
| 151 | 151 | 0.479 |
| 152 | 152 | 0.0534 |
| 153 | 153 | 0.648 |
| 154 | 154 | 0.756 |
| 155 | 155 | 0.0331 |
| 156 | 156 | 0.426 |
| 157 | 157 | 0.621 |
| 158 | 158 | 0.0145 |
| 159 | 159 | 0.276 |
| 16 | 16 | 0.0582 |
| 160 | 160 | 0.0747 |
| 161 | 161 | 0.718 |
| 162 | 162 | 0.151 |
| 163 | 163 | 0.995 |
| 164 | 164 | 0.501 |
| 165 | 165 | 0.995 |
| 166 | 166 | 0.469 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.488 |
| 169 | 169 | 0.0433 |
| 17 | 17 | 0.184 |
| 18 | 18 | 0.0992 |
| 19 | 19 | 0.0571 |
| 2 | 2 | 0.162 |
| 20 | 20 | 0.264 |
| 21 | 21 | 0.33 |
| 22 | 22 | 0.121 |
| 23 | 23 | 0.104 |
| 24 | 24 | 0.775 |
| 25 | 25 | 0.168 |
| 26 | 26 | 0.0143 |
| 27 | 27 | 0.135 |
| 28 | 28 | 0.22 |
| 29 | 29 | 0.849 |
| 3 | 3 | 0.544 |
| 30 | 30 | 0.165 |
| 31 | 31 | 0.419 |
| 32 | 32 | 6.46538e-9 |
| 33 | 33 | 0.821 |
| 34 | 34 | 0.343 |
| 35 | 35 | 0.702 |
| 36 | 36 | 0.126 |
| 37 | 37 | 0.325 |
| 38 | 38 | 0.739 |
| 39 | 39 | 0.172 |
| 4 | 4 | 0.931 |
| 40 | 40 | 0.755 |
| 41 | 41 | 0.988 |
| 42 | 42 | 0.832 |
| 43 | 43 | 0.217 |
| 44 | 44 | 0.434 |
| 45 | 45 | 0.355 |
| 46 | 46 | 0.0904 |
| 47 | 47 | 0.667 |
| 48 | 48 | 0.303 |
| 49 | 49 | 0.372 |
| 5 | 5 | 0.688 |
| 50 | 50 | 0.455 |
| 51 | 51 | 0.323 |
| 52 | 52 | 0.53 |
| 53 | 53 | 0.467 |
| 54 | 54 | 0.4 |
| 55 | 55 | 0.0896 |
| 56 | 56 | 0.508 |
| 57 | 57 | 0.813 |
| 58 | 58 | 0.562 |
| 59 | 59 | 0.0282 |
| 6 | 6 | 0.826 |
| 60 | 60 | 0.405 |
| 61 | 61 | 0.409 |
| 62 | 62 | 0.846 |
| 63 | 63 | 0.236 |
| 64 | 64 | 0.507 |
| 65 | 65 | 0.139 |
| 66 | 66 | 0.401 |
| 67 | 67 | 0.652 |
| 68 | 68 | 0.155 |
| 69 | 69 | 0.401 |
| 7 | 7 | 0.513 |
| 70 | 70 | 0.00742 |
| 71 | 71 | 0.263 |
| 72 | 72 | 0.876 |
| 73 | 73 | 0.0827 |
| 74 | 74 | 0.562 |
| 75 | 75 | 0.7 |
| 76 | 76 | 0.608 |
| 77 | 77 | 0.0236 |
| 78 | 78 | 0.406 |
| 79 | 79 | 0.00497 |
| 8 | 8 | 0.0374 |
| 80 | 80 | 0.387 |
| 81 | 81 | 0.405 |
| 82 | 82 | 0.657 |
| 83 | 83 | 0.688 |
| 84 | 84 | 0.712 |
| 85 | 85 | 0.0224 |
| 86 | 86 | 0.825 |
| 87 | 87 | 0.212 |
| 88 | 88 | 0.183 |
| 89 | 89 | 0.0577 |
| 9 | 9 | 0.292 |
| 90 | 90 | 0.877 |
| 91 | 91 | 0.275 |
| 92 | 92 | 0.166 |
| 93 | 93 | 0.943 |
| 94 | 94 | 0.822 |
| 95 | 95 | 0.623 |
| 96 | 96 | 0.771 |
| 97 | 97 | 0.493 |
| 98 | 98 | 0.766 |
| 99 | 99 | 0.00449 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11989
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000174 human smooth muscle cell of pulmonary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002591 (smooth muscle cell of the pulmonary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002012 (pulmonary artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0008886 (pulmonary vascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000174 (human smooth muscle cell of pulmonary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
