FFCP PHASE1:Hg19::chr3:51741072..51741106,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2912|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4594|TSSclassifier=S|UniProt=Q14416,Q86YG3|association_with_transcript=0bp_to_ENST00000296479,ENST00000395052,ENST00000475478,NM_000839,NM_001130063,uc003dbo.3,uc010hlu.2,uc010hlv.2_5end|coexpression_cluster_id=C837|description=CAGE_peak_1_at_GRM2_5end|id=chr3:51741072..51741106,+|ontology_enrichment_celltype=CL:0000540!1.72e-07!6;CL:0000031!1.72e-07!6;CL:0000404!1.72e-07!6|ontology_enrichment_celltype_v019=CL:0000540;6.17e-14;6!CL:0000404;6.17e-14;6!CL:0002322;7.49e-11;5!CL:0002321;1.88e-10;15!CL:0000333;1.52e-07;5|ontology_enrichment_celltype_v019_2=CL:0000540,6.10e-14,6;CL:0000031,6.10e-14,6;CL:0000404,6.10e-14,6;CL:0002322,8.94e-11,5;CL:0000047,2.94e-10,8|ontology_enrichment_development_v019=UBERON:0006601;3.47e-15;82!CL:0000031;6.17e-14;6!UBERON:0006215;7.15e-08;3|ontology_enrichment_disease=DOID:3095!2.35e-12!22;DOID:2994!2.35e-12!22;DOID:171!4.93e-09!10|ontology_enrichment_disease_v019=DOID:171;2.38e-14;10!DOID:3095;1.83e-10;22!DOID:2994;1.83e-10;22|ontology_enrichment_disease_v019_2=DOID:171,2.16e-14,10;DOID:3095,1.64e-10,22;DOID:2994,1.64e-10,22|ontology_enrichment_uberon=UBERON:0000073!3.63e-44!94;UBERON:0001016!3.63e-44!94;UBERON:0001017!9.60e-43!82;UBERON:0005743!1.17e-42!86;UBERON:0001049!4.56e-39!57;UBERON:0005068!4.56e-39!57;UBERON:0006241!4.56e-39!57;UBERON:0007135!4.56e-39!57;UBERON:0002346!5.75e-35!90;UBERON:0000955!1.49e-34!69;UBERON:0006238!1.49e-34!69;UBERON:0002616!2.66e-33!59;UBERON:0003075!3.72e-31!86;UBERON:0007284!3.72e-31!86;UBERON:0002780!5.26e-29!41;UBERON:0001890!5.26e-29!41;UBERON:0006240!5.26e-29!41;UBERON:0000924!4.51e-28!173;UBERON:0006601!4.51e-28!173;UBERON:0003080!5.49e-28!42;UBERON:0001893!4.45e-27!34;UBERON:0002020!7.34e-27!34;UBERON:0003528!7.34e-27!34;UBERON:0002791!5.43e-26!33;UBERON:0007023!1.20e-25!115;UBERON:0001869!1.48e-25!32;UBERON:0004121!4.29e-25!169;UBERON:0002619!2.40e-23!22;UBERON:0000033!5.07e-22!123;UBERON:0003056!1.03e-21!61;UBERON:0000153!1.50e-21!129;UBERON:0007811!1.50e-21!129;UBERON:0001950!2.31e-21!20;UBERON:0000956!1.36e-19!25;UBERON:0000203!1.36e-19!25;UBERON:0003076!5.08e-12!15;UBERON:0003057!5.08e-12!15;UBERON:0004733!1.02e-09!12;UBERON:0002028!1.02e-09!12;UBERON:0007277!1.02e-09!12;UBERON:0002420!4.70e-09!9;UBERON:0007245!4.70e-09!9;UBERON:0010009!4.70e-09!9;UBERON:0010011!4.70e-09!9;UBERON:0000454!4.70e-09!9;UBERON:0004732!1.03e-08!13;UBERON:0002308!1.03e-08!9;UBERON:0000125!1.03e-08!9;UBERON:0000200!9.77e-08!6;UBERON:0001871!1.37e-07!7;UBERON:0002680!2.70e-07!9;UBERON:0001895!2.70e-07!9;UBERON:0010092!2.70e-07!9;UBERON:0009663!4.45e-07!7;UBERON:0001872!5.33e-07!5;UBERON:0002021!5.46e-07!5;UBERON:0000025!5.73e-07!194|ontology_enrichment_uberon_v019=UBERON:0002619;8.27e-48;22!UBERON:0001950;1.15e-43;20!UBERON:0001869;8.28e-43;32!UBERON:0001893;9.92e-42;34!UBERON:0000956;1.67e-41;25!UBERON:0000203;1.67e-41;25!UBERON:0003528;2.09e-40;34!UBERON:0002020;2.09e-40;34!UBERON:0002791;5.28e-39;32!UBERON:0002780;2.02e-32;41!UBERON:0001890;2.02e-32;41!UBERON:0000073;5.59e-31;53!UBERON:0002616;5.59e-31;53!UBERON:0000955;9.91e-22;68!UBERON:0001016;1.29e-19;83!UBERON:0001017;4.01e-19;75!UBERON:0000200;1.76e-14;6!UBERON:0001872;5.87e-13;5!UBERON:0002021;6.72e-13;5!UBERON:0001871;1.36e-12;6!UBERON:0000349;4.66e-12;5!UBERON:0004733;5.46e-11;12!UBERON:0002028;5.46e-11;12!UBERON:0002346;1.31e-10;4!UBERON:0000923;1.31e-10;4!UBERON:0010316;1.31e-10;4!UBERON:0005291;1.31e-10;4!UBERON:0004732;4.94e-10;13!UBERON:0002298;3.87e-09;6!UBERON:0007023;6.63e-09;114!UBERON:0002680;8.19e-09;9!UBERON:0001895;8.19e-09;9!UBERON:0002420;1.62e-08;9!UBERON:0007245;1.62e-08;9!UBERON:0010009;1.62e-08;9!UBERON:0010011;1.62e-08;9!UBERON:0000454;1.62e-08;9!UBERON:0002050;1.82e-08;5!UBERON:0005423;1.82e-08;5!UBERON:0000125;3.98e-08;9!UBERON:0002308;3.98e-08;9!UBERON:0001870;5.51e-08;3!UBERON:0000013;1.52e-07;5!UBERON:0002410;1.52e-07;5!UBERON:0000988;2.13e-07;3!UBERON:0011216;4.44e-07;132|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.37e-63,89;UBERON:0001017,4.96e-60,81;UBERON:0000073,2.29e-54,53;UBERON:0002616,2.29e-54,53;UBERON:0001049,1.17e-53,56;UBERON:0005068,1.17e-53,56;UBERON:0006241,1.17e-53,56;UBERON:0007135,1.17e-53,56;UBERON:0000955,4.97e-50,68;UBERON:0006238,4.97e-50,68;UBERON:0002619,8.02e-48,22;UBERON:0001893,9.02e-48,34;UBERON:0001869,9.74e-48,32;UBERON:0003528,2.40e-47,34;UBERON:0002020,2.40e-47,34;UBERON:0002780,2.37e-44,41;UBERON:0001890,2.37e-44,41;UBERON:0003080,2.37e-44,41;UBERON:0006240,2.37e-44,41;UBERON:0002346,4.64e-44,86;UBERON:0002791,7.10e-44,32;UBERON:0001950,1.20e-43,20;UBERON:0000956,1.63e-41,25;UBERON:0000203,1.63e-41,25;UBERON:0003075,2.50e-37,82;UBERON:0007284,2.50e-37,82;UBERON:0004121,1.71e-36,171;UBERON:0000924,1.71e-36,171;UBERON:0006601,1.71e-36,171;UBERON:0003056,2.33e-31,61;UBERON:0010371,1.19e-30,104;UBERON:0007023,4.88e-25,114;UBERON:0010314,1.72e-21,132;UBERON:0011216,9.44e-21,223;UBERON:0000200,1.89e-14,6;UBERON:0001872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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2912 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4594 | |||
|TSSclassifier=S | |||
|UniProt=Q14416,Q86YG3 | |||
|association_with_transcript=0bp_to_ENST00000296479,ENST00000395052,ENST00000475478,NM_000839,NM_001130063,uc003dbo.3,uc010hlu.2,uc010hlv.2_5end | |||
|coexpression_cluster_id=C837 | |||
|description=CAGE_peak_1_at_GRM2_5end | |||
|id=chr3:51741072..51741106,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.72e-07!6;CL:0000031!1.72e-07!6;CL:0000404!1.72e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;6.17e-14;6!CL:0000404;6.17e-14;6!CL:0002322;7.49e-11;5!CL:0002321;1.88e-10;15!CL:0000333;1.52e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.10e-14,6;CL:0000031,6.10e-14,6;CL:0000404,6.10e-14,6;CL:0002322,8.94e-11,5;CL:0000047,2.94e-10,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.47e-15;82!CL:0000031;6.17e-14;6!UBERON:0006215;7.15e-08;3 | |||
|ontology_enrichment_disease=DOID:3095!2.35e-12!22;DOID:2994!2.35e-12!22;DOID:171!4.93e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:171;2.38e-14;10!DOID:3095;1.83e-10;22!DOID:2994;1.83e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.16e-14,10;DOID:3095,1.64e-10,22;DOID:2994,1.64e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.63e-44!94;UBERON:0001016!3.63e-44!94;UBERON:0001017!9.60e-43!82;UBERON:0005743!1.17e-42!86;UBERON:0001049!4.56e-39!57;UBERON:0005068!4.56e-39!57;UBERON:0006241!4.56e-39!57;UBERON:0007135!4.56e-39!57;UBERON:0002346!5.75e-35!90;UBERON:0000955!1.49e-34!69;UBERON:0006238!1.49e-34!69;UBERON:0002616!2.66e-33!59;UBERON:0003075!3.72e-31!86;UBERON:0007284!3.72e-31!86;UBERON:0002780!5.26e-29!41;UBERON:0001890!5.26e-29!41;UBERON:0006240!5.26e-29!41;UBERON:0000924!4.51e-28!173;UBERON:0006601!4.51e-28!173;UBERON:0003080!5.49e-28!42;UBERON:0001893!4.45e-27!34;UBERON:0002020!7.34e-27!34;UBERON:0003528!7.34e-27!34;UBERON:0002791!5.43e-26!33;UBERON:0007023!1.20e-25!115;UBERON:0001869!1.48e-25!32;UBERON:0004121!4.29e-25!169;UBERON:0002619!2.40e-23!22;UBERON:0000033!5.07e-22!123;UBERON:0003056!1.03e-21!61;UBERON:0000153!1.50e-21!129;UBERON:0007811!1.50e-21!129;UBERON:0001950!2.31e-21!20;UBERON:0000956!1.36e-19!25;UBERON:0000203!1.36e-19!25;UBERON:0003076!5.08e-12!15;UBERON:0003057!5.08e-12!15;UBERON:0004733!1.02e-09!12;UBERON:0002028!1.02e-09!12;UBERON:0007277!1.02e-09!12;UBERON:0002420!4.70e-09!9;UBERON:0007245!4.70e-09!9;UBERON:0010009!4.70e-09!9;UBERON:0010011!4.70e-09!9;UBERON:0000454!4.70e-09!9;UBERON:0004732!1.03e-08!13;UBERON:0002308!1.03e-08!9;UBERON:0000125!1.03e-08!9;UBERON:0000200!9.77e-08!6;UBERON:0001871!1.37e-07!7;UBERON:0002680!2.70e-07!9;UBERON:0001895!2.70e-07!9;UBERON:0010092!2.70e-07!9;UBERON:0009663!4.45e-07!7;UBERON:0001872!5.33e-07!5;UBERON:0002021!5.46e-07!5;UBERON:0000025!5.73e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.27e-48;22!UBERON:0001950;1.15e-43;20!UBERON:0001869;8.28e-43;32!UBERON:0001893;9.92e-42;34!UBERON:0000956;1.67e-41;25!UBERON:0000203;1.67e-41;25!UBERON:0003528;2.09e-40;34!UBERON:0002020;2.09e-40;34!UBERON:0002791;5.28e-39;32!UBERON:0002780;2.02e-32;41!UBERON:0001890;2.02e-32;41!UBERON:0000073;5.59e-31;53!UBERON:0002616;5.59e-31;53!UBERON:0000955;9.91e-22;68!UBERON:0001016;1.29e-19;83!UBERON:0001017;4.01e-19;75!UBERON:0000200;1.76e-14;6!UBERON:0001872;5.87e-13;5!UBERON:0002021;6.72e-13;5!UBERON:0001871;1.36e-12;6!UBERON:0000349;4.66e-12;5!UBERON:0004733;5.46e-11;12!UBERON:0002028;5.46e-11;12!UBERON:0002346;1.31e-10;4!UBERON:0000923;1.31e-10;4!UBERON:0010316;1.31e-10;4!UBERON:0005291;1.31e-10;4!UBERON:0004732;4.94e-10;13!UBERON:0002298;3.87e-09;6!UBERON:0007023;6.63e-09;114!UBERON:0002680;8.19e-09;9!UBERON:0001895;8.19e-09;9!UBERON:0002420;1.62e-08;9!UBERON:0007245;1.62e-08;9!UBERON:0010009;1.62e-08;9!UBERON:0010011;1.62e-08;9!UBERON:0000454;1.62e-08;9!UBERON:0002050;1.82e-08;5!UBERON:0005423;1.82e-08;5!UBERON:0000125;3.98e-08;9!UBERON:0002308;3.98e-08;9!UBERON:0001870;5.51e-08;3!UBERON:0000013;1.52e-07;5!UBERON:0002410;1.52e-07;5!UBERON:0000988;2.13e-07;3!UBERON:0011216;4.44e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.37e-63,89;UBERON:0001017,4.96e-60,81;UBERON:0000073,2.29e-54,53;UBERON:0002616,2.29e-54,53;UBERON:0001049,1.17e-53,56;UBERON:0005068,1.17e-53,56;UBERON:0006241,1.17e-53,56;UBERON:0007135,1.17e-53,56;UBERON:0000955,4.97e-50,68;UBERON:0006238,4.97e-50,68;UBERON:0002619,8.02e-48,22;UBERON:0001893,9.02e-48,34;UBERON:0001869,9.74e-48,32;UBERON:0003528,2.40e-47,34;UBERON:0002020,2.40e-47,34;UBERON:0002780,2.37e-44,41;UBERON:0001890,2.37e-44,41;UBERON:0003080,2.37e-44,41;UBERON:0006240,2.37e-44,41;UBERON:0002346,4.64e-44,86;UBERON:0002791,7.10e-44,32;UBERON:0001950,1.20e-43,20;UBERON:0000956,1.63e-41,25;UBERON:0000203,1.63e-41,25;UBERON:0003075,2.50e-37,82;UBERON:0007284,2.50e-37,82;UBERON:0004121,1.71e-36,171;UBERON:0000924,1.71e-36,171;UBERON:0006601,1.71e-36,171;UBERON:0003056,2.33e-31,61;UBERON:0010371,1.19e-30,104;UBERON:0007023,4.88e-25,114;UBERON:0010314,1.72e-21,132;UBERON:0011216,9.44e-21,223;UBERON:0000200,1.89e-14,6;UBERON:0001872,6.40e-13,5;UBERON:0002021,6.72e-13,5;UBERON:0001871,1.31e-12,6;UBERON:0000349,3.95e-12,5;UBERON:0004733,5.55e-11,12;UBERON:0002028,5.55e-11,12;UBERON:0007277,5.55e-11,12;UBERON:0003076,1.36e-10,15;UBERON:0003057,1.36e-10,15;UBERON:0004732,5.01e-10,13;UBERON:0000025,9.55e-10,192;UBERON:0002298,4.10e-09,6;UBERON:0002680,8.95e-09,9;UBERON:0001895,8.95e-09,9;UBERON:0010092,8.95e-09,9;UBERON:0002420,1.44e-08,9;UBERON:0007245,1.44e-08,9;UBERON:0010009,1.44e-08,9;UBERON:0010011,1.44e-08,9;UBERON:0000454,1.44e-08,9;UBERON:0000125,4.36e-08,9;UBERON:0002308,4.36e-08,9;UBERON:0001870,5.51e-08,3;UBERON:0000013,1.39e-07,5;UBERON:0002410,1.39e-07,5;UBERON:0000988,2.56e-07,3 | |||
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| |||
|short_description=p1@GRM2 | |||
}} |
Revision as of 00:44, 13 September 2013
Short description: | p1@GRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GRM2_5end |
Coexpression cluster: | C837_neuroectodermal_duodenum_temporal_occipital_medial_carcinoid_parietal |
Association with transcript: | 0bp_to_ENST00000296479, ENST00000395052, ENST00000475478, NM_000839, NM_001130063, uc003dbo.3, uc010hlu.2, uc010hlv.2_5end |
EntrezGene: | GRM2 |
HGNC: | 4594 |
UniProt: | Q14416Q86YG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.10e-14 | 6 |
neuroblast | 6.10e-14 | 6 |
electrically signaling cell | 6.10e-14 | 6 |
embryonic stem cell | 8.94e-11 | 5 |
neuronal stem cell | 2.94e-10 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.16e-14 | 10 |
germ cell and embryonal cancer | 1.64e-10 | 22 |
germ cell cancer | 1.64e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.