FFCP PHASE1:Mm9::chr14:122850331..122850343,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=328479|HGNC=|MCL_coexpression_id=2887|UniProt=A1L3C8|association_with_transcript=0bp_to_ENSMUST00000081580,NR_033325_5end|description=CAGE_peak_3_at_Gm5089_5end|id=chr14:122850331..122850343,-|ontology_enrichment_celltype=CL:0002319!1.97e-13!43;CL:0000221!6.37e-13!44;CL:0000133!6.37e-13!44;CL:0000117!8.31e-12!23;CL:0000337!8.31e-12!23;CL:0000055!2.53e-10!50;CL:0002453!2.99e-10!8;CL:0000128!4.48e-08!6;CL:0000126!4.48e-08!6;CL:0000127!4.48e-08!6;CL:0000540!9.30e-08!33;CL:0000047!9.30e-08!33;CL:0000031!9.30e-08!33;CL:0000404!9.30e-08!33;CL:0000333!9.97e-08!10;CL:0000095!9.97e-08!10;CL:0000243!9.97e-08!10;CL:0000123!9.97e-08!10;CL:0000125!9.97e-08!10;CL:0000030!9.97e-08!10;CL:0000339!9.97e-08!10|ontology_enrichment_celltype_v019_2=CL:0002453,6.30e-18,8;CL:0002319,1.63e-17,43;CL:0000221,5.04e-17,44;CL:0000133,5.04e-17,44;CL:0000333,3.99e-14,10;CL:0000095,3.99e-14,10;CL:0000243,3.99e-14,10;CL:0000123,3.99e-14,10;CL:0000125,3.99e-14,10;CL:0000030,3.99e-14,10;CL:0000339,3.99e-14,10;CL:0000128,6.46e-13,6;CL:0000126,6.46e-13,6;CL:0000127,6.46e-13,6;CL:0000117,7.83e-10,23;CL:0000337,7.83e-10,23;CL:0002321,3.23e-09,70;CL:0000540,7.62e-08,33;CL:0000047,7.62e-08,33;CL:0000031,7.62e-08,33;CL:0000404,7.62e-08,33;CL:0002605,2.29e-07,2;CL:0002604,2.29e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.92e-35!73;UBERON:0005743!2.92e-35!73;UBERON:0000073!7.86e-34!75;UBERON:0001016!7.86e-34!75;UBERON:0001049!1.10e-33!52;UBERON:0005068!1.10e-33!52;UBERON:0006241!1.10e-33!52;UBERON:0007135!1.10e-33!52;UBERON:0000955!9.34e-29!50;UBERON:0006238!9.34e-29!50;UBERON:0002616!6.55e-28!49;UBERON:0000033!1.12e-26!63;UBERON:0002346!2.03e-25!71;UBERON:0003075!2.03e-25!71;UBERON:0007284!2.03e-25!71;UBERON:0004121!3.31e-25!102;UBERON:0000924!3.31e-25!102;UBERON:0006601!3.31e-25!102;UBERON:0002020!3.46e-25!34;UBERON:0003080!1.06e-21!40;UBERON:0002780!5.27e-21!39;UBERON:0001890!5.27e-21!39;UBERON:0006240!5.27e-21!39;UBERON:0003056!1.24e-20!49;UBERON:0002791!3.67e-20!29;UBERON:0003528!3.67e-20!29;UBERON:0001893!3.67e-20!29;UBERON:0000153!7.02e-17!94;UBERON:0007811!1.50e-15!86;UBERON:0000956!5.46e-13!21;UBERON:0001869!5.46e-13!21;UBERON:0000203!5.46e-13!21;UBERON:0003076!1.22e-12!12;UBERON:0003057!1.22e-12!12;UBERON:0002619!4.21e-10!17;UBERON:0002021!9.94e-09!10;UBERON:0000411!9.94e-09!10;UBERON:0001950!9.94e-09!10;UBERON:0002420!1.46e-08!8;UBERON:0007245!1.46e-08!8;UBERON:0010009!1.46e-08!8;UBERON:0010011!1.46e-08!8;UBERON:0000454!1.46e-08!8;UBERON:0000025!3.14e-08!114;UBERON:0004111!1.40e-07!122;UBERON:0002240!3.73e-07!6;UBERON:0005174!3.73e-07!6;UBERON:0001137!3.73e-07!6;UBERON:0004733!5.30e-07!6;UBERON:0004732!5.30e-07!6;UBERON:0002028!5.30e-07!6;UBERON:0007277!5.30e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-31,73;UBERON:0001016,2.15e-30,75;UBERON:0002020,4.39e-28,34;UBERON:0001049,1.28e-25,52;UBERON:0005068,1.28e-25,52;UBERON:0006241,1.28e-25,52;UBERON:0007135,1.28e-25,52;UBERON:0000073,1.77e-24,54;UBERON:0004121,9.31e-23,95;UBERON:0000924,9.31e-23,95;UBERON:0006601,9.31e-23,95;UBERON:0003528,4.22e-21,29;UBERON:0002791,4.22e-21,29;UBERON:0001893,4.22e-21,29;UBERON:0002616,6.64e-20,46;UBERON:0002346,7.52e-20,64;UBERON:0003075,7.52e-20,64;UBERON:0007284,7.52e-20,64;UBERON:0000955,2.19e-19,47;UBERON:0006238,2.19e-19,47;UBERON:0010371,1.31e-18,73;UBERON:0002780,9.47e-17,39;UBERON:0001890,9.47e-17,39;UBERON:0006240,9.47e-17,39;UBERON:0003080,3.08e-16,40;UBERON:0002619,6.31e-15,17;UBERON:0000956,3.84e-14,21;UBERON:0001869,3.84e-14,21;UBERON:0000203,3.84e-14,21;UBERON:0010314,1.15e-13,92;UBERON:0003056,1.43e-12,49;UBERON:0003076,1.99e-10,12;UBERON:0003057,1.99e-10,12;UBERON:0002021,2.18e-09,10;UBERON:0000411,2.18e-09,10;UBERON:0001950,2.18e-09,10;UBERON:0004111,5.39e-09,122;UBERON:0000025,6.90e-09,114;UBERON:0001948,1.24e-08,5;UBERON:0002315,1.24e-08,5;UBERON:0002420,3.25e-08,8;UBERON:0007245,3.25e-08,8;UBERON:0010009,3.25e-08,8;UBERON:0010011,3.25e-08,8;UBERON:0000454,3.25e-08,8;UBERON:0011216,4.96e-08,194;UBERON:0002240,3.33e-07,6;UBERON:0005174,3.33e-07,6;UBERON:0001137,3.33e-07,6;UBERON:0002037,3.74e-07,4;UBERON:0002680,3.74e-07,4;UBERON:0001895,3.74e-07,4;UBERON:0010092,3.74e-07,4;UBERON:0006215,3.74e-07,4;UBERON:0001954,5.73e-07,7;UBERON:0003022,5.73e-07,7;UBERON:0002421,5.73e-07,7;UBERON:0000349,5.73e-07,7;UBERON:0002600,5.73e-07,7|phase1_expression=3.36312578920067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,0.436050312760893,8.5677611266444,5.8328969722285,2.79972843250725,4.31257693094915,0,0,0,0,0,0,1.41621522601718,2.11596391708813,0,1.0165335962074,0.889294796111139,0,0,0,2.09720077362883,1.92109152660777,0.311068836925433,0.810035629990144,0.420649922702764,1.14260393761521,1.10434270475807,0,0,0,0,0.383062014255563,0.307213066512487,0.527545150920775,2.10421580285542,1.56274011167028,1.3959149950069,0.56276261003168,1.06958773443767,0.883885756421003,2.13557521198654,1.4911955666024,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63502717310392,1.8850203613211,0,0,0,0,0.449371918214468,1.83000241127451,0.502617408451458,1.39059456153821,0,0.20778804455956,0.648965052271031,0,0,0,0,0,0,0.360124259610698,0,0.204109497453984,0.384341160854549,0.843315521037559,0,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.73376933133365,1.23485534855141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428674070063185,0.709360934569094,1.07021290561242,0.493647061806363,0,0,0,0,0,0.161464426695906,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,3.43737308063638,1.89038500578056,0.685082519770642,0.755393897389701,1.35004500046361,1.35096360967266,1.81256963593682,1.55328093525546,0.415149390336707,1.19707462020309,0.170733605754134,0,0.628839487883947,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0,0.377252682772152,0.655490552289177,0.320125762024346,0.229741875822453,0.476293691283074,0.231768651889711,0,0,0.294397840268795,0.342869252385415,0,0.715308569841963,0,0.282328141245992,0.592302255241736,0,0.263069711437843,0,0,0,0.0985044823755635,0,0.154936841185966,0,0.499621155875892,0.467863216890817,0,0,0,0|short_description=p3@Gm5089}} | ||
|EntrezGene=328479 | |||
|HGNC= | |||
|MCL_coexpression_id=2887 | |||
|UniProt=A1L3C8 | |||
|association_with_transcript=0bp_to_ENSMUST00000081580,NR_033325_5end | |||
|description=CAGE_peak_3_at_Gm5089_5end | |||
|id=chr14:122850331..122850343,- | |||
|ontology_enrichment_celltype=CL:0002319!1.97e-13!43;CL:0000221!6.37e-13!44;CL:0000133!6.37e-13!44;CL:0000117!8.31e-12!23;CL:0000337!8.31e-12!23;CL:0000055!2.53e-10!50;CL:0002453!2.99e-10!8;CL:0000128!4.48e-08!6;CL:0000126!4.48e-08!6;CL:0000127!4.48e-08!6;CL:0000540!9.30e-08!33;CL:0000047!9.30e-08!33;CL:0000031!9.30e-08!33;CL:0000404!9.30e-08!33;CL:0000333!9.97e-08!10;CL:0000095!9.97e-08!10;CL:0000243!9.97e-08!10;CL:0000123!9.97e-08!10;CL:0000125!9.97e-08!10;CL:0000030!9.97e-08!10;CL:0000339!9.97e-08!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,6.30e-18,8;CL:0002319,1.63e-17,43;CL:0000221,5.04e-17,44;CL:0000133,5.04e-17,44;CL:0000333,3.99e-14,10;CL:0000095,3.99e-14,10;CL:0000243,3.99e-14,10;CL:0000123,3.99e-14,10;CL:0000125,3.99e-14,10;CL:0000030,3.99e-14,10;CL:0000339,3.99e-14,10;CL:0000128,6.46e-13,6;CL:0000126,6.46e-13,6;CL:0000127,6.46e-13,6;CL:0000117,7.83e-10,23;CL:0000337,7.83e-10,23;CL:0002321,3.23e-09,70;CL:0000540,7.62e-08,33;CL:0000047,7.62e-08,33;CL:0000031,7.62e-08,33;CL:0000404,7.62e-08,33;CL:0002605,2.29e-07,2;CL:0002604,2.29e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.92e-35!73;UBERON:0005743!2.92e-35!73;UBERON:0000073!7.86e-34!75;UBERON:0001016!7.86e-34!75;UBERON:0001049!1.10e-33!52;UBERON:0005068!1.10e-33!52;UBERON:0006241!1.10e-33!52;UBERON:0007135!1.10e-33!52;UBERON:0000955!9.34e-29!50;UBERON:0006238!9.34e-29!50;UBERON:0002616!6.55e-28!49;UBERON:0000033!1.12e-26!63;UBERON:0002346!2.03e-25!71;UBERON:0003075!2.03e-25!71;UBERON:0007284!2.03e-25!71;UBERON:0004121!3.31e-25!102;UBERON:0000924!3.31e-25!102;UBERON:0006601!3.31e-25!102;UBERON:0002020!3.46e-25!34;UBERON:0003080!1.06e-21!40;UBERON:0002780!5.27e-21!39;UBERON:0001890!5.27e-21!39;UBERON:0006240!5.27e-21!39;UBERON:0003056!1.24e-20!49;UBERON:0002791!3.67e-20!29;UBERON:0003528!3.67e-20!29;UBERON:0001893!3.67e-20!29;UBERON:0000153!7.02e-17!94;UBERON:0007811!1.50e-15!86;UBERON:0000956!5.46e-13!21;UBERON:0001869!5.46e-13!21;UBERON:0000203!5.46e-13!21;UBERON:0003076!1.22e-12!12;UBERON:0003057!1.22e-12!12;UBERON:0002619!4.21e-10!17;UBERON:0002021!9.94e-09!10;UBERON:0000411!9.94e-09!10;UBERON:0001950!9.94e-09!10;UBERON:0002420!1.46e-08!8;UBERON:0007245!1.46e-08!8;UBERON:0010009!1.46e-08!8;UBERON:0010011!1.46e-08!8;UBERON:0000454!1.46e-08!8;UBERON:0000025!3.14e-08!114;UBERON:0004111!1.40e-07!122;UBERON:0002240!3.73e-07!6;UBERON:0005174!3.73e-07!6;UBERON:0001137!3.73e-07!6;UBERON:0004733!5.30e-07!6;UBERON:0004732!5.30e-07!6;UBERON:0002028!5.30e-07!6;UBERON:0007277!5.30e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-31,73;UBERON:0001016,2.15e-30,75;UBERON:0002020,4.39e-28,34;UBERON:0001049,1.28e-25,52;UBERON:0005068,1.28e-25,52;UBERON:0006241,1.28e-25,52;UBERON:0007135,1.28e-25,52;UBERON:0000073,1.77e-24,54;UBERON:0004121,9.31e-23,95;UBERON:0000924,9.31e-23,95;UBERON:0006601,9.31e-23,95;UBERON:0003528,4.22e-21,29;UBERON:0002791,4.22e-21,29;UBERON:0001893,4.22e-21,29;UBERON:0002616,6.64e-20,46;UBERON:0002346,7.52e-20,64;UBERON:0003075,7.52e-20,64;UBERON:0007284,7.52e-20,64;UBERON:0000955,2.19e-19,47;UBERON:0006238,2.19e-19,47;UBERON:0010371,1.31e-18,73;UBERON:0002780,9.47e-17,39;UBERON:0001890,9.47e-17,39;UBERON:0006240,9.47e-17,39;UBERON:0003080,3.08e-16,40;UBERON:0002619,6.31e-15,17;UBERON:0000956,3.84e-14,21;UBERON:0001869,3.84e-14,21;UBERON:0000203,3.84e-14,21;UBERON:0010314,1.15e-13,92;UBERON:0003056,1.43e-12,49;UBERON:0003076,1.99e-10,12;UBERON:0003057,1.99e-10,12;UBERON:0002021,2.18e-09,10;UBERON:0000411,2.18e-09,10;UBERON:0001950,2.18e-09,10;UBERON:0004111,5.39e-09,122;UBERON:0000025,6.90e-09,114;UBERON:0001948,1.24e-08,5;UBERON:0002315,1.24e-08,5;UBERON:0002420,3.25e-08,8;UBERON:0007245,3.25e-08,8;UBERON:0010009,3.25e-08,8;UBERON:0010011,3.25e-08,8;UBERON:0000454,3.25e-08,8;UBERON:0011216,4.96e-08,194;UBERON:0002240,3.33e-07,6;UBERON:0005174,3.33e-07,6;UBERON:0001137,3.33e-07,6;UBERON:0002037,3.74e-07,4;UBERON:0002680,3.74e-07,4;UBERON:0001895,3.74e-07,4;UBERON:0010092,3.74e-07,4;UBERON:0006215,3.74e-07,4;UBERON:0001954,5.73e-07,7;UBERON:0003022,5.73e-07,7;UBERON:0002421,5.73e-07,7;UBERON:0000349,5.73e-07,7;UBERON:0002600,5.73e-07,7 | |||
|phase1_expression=3.36312578920067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,0.436050312760893,8.5677611266444,5.8328969722285,2.79972843250725,4.31257693094915,0,0,0,0,0,0,1.41621522601718,2.11596391708813,0,1.0165335962074,0.889294796111139,0,0,0,2.09720077362883,1.92109152660777,0.311068836925433,0.810035629990144,0.420649922702764,1.14260393761521,1.10434270475807,0,0,0,0,0.383062014255563,0.307213066512487,0.527545150920775,2.10421580285542,1.56274011167028,1.3959149950069,0.56276261003168,1.06958773443767,0.883885756421003,2.13557521198654,1.4911955666024,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63502717310392,1.8850203613211,0,0,0,0,0.449371918214468,1.83000241127451,0.502617408451458,1.39059456153821,0,0.20778804455956,0.648965052271031,0,0,0,0,0,0,0.360124259610698,0,0.204109497453984,0.384341160854549,0.843315521037559,0,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.73376933133365,1.23485534855141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428674070063185,0.709360934569094,1.07021290561242,0.493647061806363,0,0,0,0,0,0.161464426695906,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,3.43737308063638,1.89038500578056,0.685082519770642,0.755393897389701,1.35004500046361,1.35096360967266,1.81256963593682,1.55328093525546,0.415149390336707,1.19707462020309,0.170733605754134,0,0.628839487883947,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0,0.377252682772152,0.655490552289177,0.320125762024346,0.229741875822453,0.476293691283074,0.231768651889711,0,0,0.294397840268795,0.342869252385415,0,0.715308569841963,0,0.282328141245992,0.592302255241736,0,0.263069711437843,0,0,0,0.0985044823755635,0,0.154936841185966,0,0.499621155875892,0.467863216890817,0,0,0,0 | |||
|short_description=p3@Gm5089 | |||
}} |
Revision as of 01:37, 13 September 2013
Short description: | p3@Gm5089 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gm5089_5end |
Coexpression cluster: | MCL_coexpression_mm9:2887 |
Association with transcript: | 0bp_to_ENSMUST00000081580, NR_033325_5end |
EntrezGene: | Gm5089 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 6.30e-18 | 8 |
neural cell | 1.63e-17 | 43 |
ectodermal cell | 5.04e-17 | 44 |
neurectodermal cell | 5.04e-17 | 44 |
migratory neural crest cell | 3.99e-14 | 10 |
neuron associated cell | 3.99e-14 | 10 |
glial cell (sensu Vertebrata) | 3.99e-14 | 10 |
neuron associated cell (sensu Vertebrata) | 3.99e-14 | 10 |
glial cell | 3.99e-14 | 10 |
glioblast | 3.99e-14 | 10 |
glioblast (sensu Vertebrata) | 3.99e-14 | 10 |
oligodendrocyte | 6.46e-13 | 6 |
macroglial cell | 6.46e-13 | 6 |
astrocyte | 6.46e-13 | 6 |
CNS neuron (sensu Vertebrata) | 7.83e-10 | 23 |
neuroblast (sensu Vertebrata) | 7.83e-10 | 23 |
embryonic cell | 3.23e-09 | 70 |
neuron | 7.62e-08 | 33 |
neuronal stem cell | 7.62e-08 | 33 |
neuroblast | 7.62e-08 | 33 |
electrically signaling cell | 7.62e-08 | 33 |
astrocyte of the cerebral cortex | 2.29e-07 | 2 |
astrocyte of the hippocampus | 2.29e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.