FFCP PHASE1:Mm9::chr1:129574459..129574474,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=72160|HGNC=|MCL_coexpression_id=87|UniProt=Q8C996|association_with_transcript=123bp_to_NM_028135,uc007cku.1,uc011wqz.1_5end|description=CAGE_peak_3_at_Tmem163_5end|id=chr1:129574459..129574474,-|ontology_enrichment_celltype=CL:0000117!5.92e-15!23;CL:0000337!5.92e-15!23;CL:0000540!1.01e-09!33;CL:0000047!1.01e-09!33;CL:0000031!1.01e-09!33;CL:0000404!1.01e-09!33;CL:0002319!5.47e-08!43;CL:0000221!1.31e-07!44;CL:0000133!1.31e-07!44;CL:0000393!5.32e-07!39;CL:0000211!5.32e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-23,23;CL:0000337,1.08e-23,23;CL:0000540,1.01e-15,33;CL:0000047,1.01e-15,33;CL:0000031,1.01e-15,33;CL:0000404,1.01e-15,33;CL:0000393,6.71e-13,39;CL:0000211,6.71e-13,39;CL:0000120,1.14e-11,3;CL:0002319,1.86e-11,43;CL:0002612,2.52e-11,3;CL:0002613,3.19e-11,3;CL:0000221,3.89e-11,44;CL:0000133,3.89e-11,44;CL:0002611,1.87e-08,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.96e-21!73;UBERON:0005743!1.96e-21!73;UBERON:0001049!3.44e-21!52;UBERON:0005068!3.44e-21!52;UBERON:0006241!3.44e-21!52;UBERON:0007135!3.44e-21!52;UBERON:0000073!2.49e-20!75;UBERON:0001016!2.49e-20!75;UBERON:0002346!9.89e-19!71;UBERON:0003075!9.89e-19!71;UBERON:0007284!9.89e-19!71;UBERON:0002020!9.60e-18!34;UBERON:0000955!1.81e-17!50;UBERON:0006238!1.81e-17!50;UBERON:0002616!1.15e-16!49;UBERON:0000033!6.18e-16!63;UBERON:0003056!8.26e-15!49;UBERON:0004121!1.49e-14!102;UBERON:0000924!1.49e-14!102;UBERON:0006601!1.49e-14!102;UBERON:0003080!2.89e-14!40;UBERON:0002780!1.21e-13!39;UBERON:0001890!1.21e-13!39;UBERON:0006240!1.21e-13!39;UBERON:0002791!3.43e-13!29;UBERON:0003528!3.43e-13!29;UBERON:0001893!3.43e-13!29;UBERON:0000025!2.86e-10!114;UBERON:0004111!2.00e-08!122;UBERON:0003076!7.46e-08!12;UBERON:0003057!7.46e-08!12;UBERON:0007811!9.50e-08!86;UBERON:0002420!1.10e-07!8;UBERON:0007245!1.10e-07!8;UBERON:0010009!1.10e-07!8;UBERON:0010011!1.10e-07!8;UBERON:0000454!1.10e-07!8;UBERON:0000956!1.77e-07!21;UBERON:0001869!1.77e-07!21;UBERON:0000203!1.77e-07!21;UBERON:0002240!6.93e-07!6;UBERON:0005174!6.93e-07!6;UBERON:0001137!6.93e-07!6;UBERON:0000153!7.09e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0003076,7.85e-22,12;UBERON:0003057,7.85e-22,12;UBERON:0001017,1.48e-20,73;UBERON:0001016,6.78e-20,75;UBERON:0001049,1.02e-19,52;UBERON:0005068,1.02e-19,52;UBERON:0006241,1.02e-19,52;UBERON:0007135,1.02e-19,52;UBERON:0000073,7.56e-19,54;UBERON:0001948,3.98e-18,5;UBERON:0002315,3.98e-18,5;UBERON:0002346,2.57e-15,64;UBERON:0003075,2.57e-15,64;UBERON:0007284,2.57e-15,64;UBERON:0002240,4.63e-15,6;UBERON:0005174,4.63e-15,6;UBERON:0001137,4.63e-15,6;UBERON:0004121,8.45e-15,95;UBERON:0000924,8.45e-15,95;UBERON:0006601,8.45e-15,95;UBERON:0002020,1.03e-14,34;UBERON:0010371,5.78e-13,73;UBERON:0000955,9.68e-13,47;UBERON:0006238,9.68e-13,47;UBERON:0002257,2.52e-11,3;UBERON:0002616,3.13e-11,46;UBERON:0002420,1.60e-10,8;UBERON:0007245,1.60e-10,8;UBERON:0010009,1.60e-10,8;UBERON:0010011,1.60e-10,8;UBERON:0000454,1.60e-10,8;UBERON:0010314,1.65e-09,92;UBERON:0004733,9.63e-09,6;UBERON:0004732,9.63e-09,6;UBERON:0002028,9.63e-09,6;UBERON:0007277,9.63e-09,6;UBERON:0002256,1.87e-08,2;UBERON:0000025,6.83e-08,114;UBERON:0004111,4.08e-07,122;UBERON:0001896,4.76e-07,2;UBERON:0002298,4.76e-07,2;UBERON:0005290,4.76e-07,2;UBERON:0010096,4.76e-07,2;UBERON:0000369,6.85e-07,5;UBERON:0002435,6.85e-07,5;UBERON:0000204,6.85e-07,5;UBERON:0010082,6.85e-07,5;UBERON:0002780,9.33e-07,39;UBERON:0001890,9.33e-07,39;UBERON:0006240,9.33e-07,39|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0.315462165358238,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0.671130424230945,0,0,0,0,0,7.68802551266472,4.7609188134483,7.60597684207415,1.0165335962074,0,0,0,0,0.898800331555214,0.768436610643109,0.622137673850866,0.540023753326763,0.210324961351382,10.2834354385369,6.84692476950002,0.244981598429908,0.0958454710182364,0,0,0.510749352340751,0.614426133024974,4.87979264601717,4.02545631850602,3.64639359389732,1.11673199600552,2.25105044012672,0.916789486660861,5.89257170947335,6.12198227436143,3.16879057903011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,2.09446706813455,0,0.11981512450592,0,0,0.599162557619291,0.457500602818626,0.502617408451458,0.347648640384553,0.255715457330331,1.0389402227978,0.648965052271031,0,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0,0.476255494059295,0.512454881139399,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.828503090142008,0.938104239924385,0.180062061461015,0.710234206755631,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0.164167464079095,0.162137619091711,0.146199987425332,0,0,0.420579897128254,0.617427674275707,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0.315270288212382,0,1.11618338060241,0,0,0,0,0,0,0,1.12385412991454,1.05490517932983,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,1.60660658210904,0,0,0,0,0,0.485561272309963,0.302323556964751,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0,0.178368817602071,0.329098041204242,1.2178597964584,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,0.460325236507177,1.14579102687879,0.68741272937475,1.37016503954128,0,0.675022500231806,0.45032120322422,0,0.51776031175182,0.31136204275253,0.399024873401031,1.53660245178721,0.243106717068294,0,0.551530525350042,0.222246727801615,0.824140228955577,0,0.252697211763798,0.50695859978048,0,0.280924522409647,0.128050304809739,0.229741875822453,0.476293691283074,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.376437521661322,0.592302255241736,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0,0.818462086339379,0.464810523557898,0.192906610981141,1.49886346762768,0.233931608445408,0.214871054048298,0.382576664137687,0,0|short_description=p3@Tmem163}} | ||
|EntrezGene=72160 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=Q8C996 | |||
|association_with_transcript=123bp_to_NM_028135,uc007cku.1,uc011wqz.1_5end | |||
|description=CAGE_peak_3_at_Tmem163_5end | |||
|id=chr1:129574459..129574474,- | |||
|ontology_enrichment_celltype=CL:0000117!5.92e-15!23;CL:0000337!5.92e-15!23;CL:0000540!1.01e-09!33;CL:0000047!1.01e-09!33;CL:0000031!1.01e-09!33;CL:0000404!1.01e-09!33;CL:0002319!5.47e-08!43;CL:0000221!1.31e-07!44;CL:0000133!1.31e-07!44;CL:0000393!5.32e-07!39;CL:0000211!5.32e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-23,23;CL:0000337,1.08e-23,23;CL:0000540,1.01e-15,33;CL:0000047,1.01e-15,33;CL:0000031,1.01e-15,33;CL:0000404,1.01e-15,33;CL:0000393,6.71e-13,39;CL:0000211,6.71e-13,39;CL:0000120,1.14e-11,3;CL:0002319,1.86e-11,43;CL:0002612,2.52e-11,3;CL:0002613,3.19e-11,3;CL:0000221,3.89e-11,44;CL:0000133,3.89e-11,44;CL:0002611,1.87e-08,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.96e-21!73;UBERON:0005743!1.96e-21!73;UBERON:0001049!3.44e-21!52;UBERON:0005068!3.44e-21!52;UBERON:0006241!3.44e-21!52;UBERON:0007135!3.44e-21!52;UBERON:0000073!2.49e-20!75;UBERON:0001016!2.49e-20!75;UBERON:0002346!9.89e-19!71;UBERON:0003075!9.89e-19!71;UBERON:0007284!9.89e-19!71;UBERON:0002020!9.60e-18!34;UBERON:0000955!1.81e-17!50;UBERON:0006238!1.81e-17!50;UBERON:0002616!1.15e-16!49;UBERON:0000033!6.18e-16!63;UBERON:0003056!8.26e-15!49;UBERON:0004121!1.49e-14!102;UBERON:0000924!1.49e-14!102;UBERON:0006601!1.49e-14!102;UBERON:0003080!2.89e-14!40;UBERON:0002780!1.21e-13!39;UBERON:0001890!1.21e-13!39;UBERON:0006240!1.21e-13!39;UBERON:0002791!3.43e-13!29;UBERON:0003528!3.43e-13!29;UBERON:0001893!3.43e-13!29;UBERON:0000025!2.86e-10!114;UBERON:0004111!2.00e-08!122;UBERON:0003076!7.46e-08!12;UBERON:0003057!7.46e-08!12;UBERON:0007811!9.50e-08!86;UBERON:0002420!1.10e-07!8;UBERON:0007245!1.10e-07!8;UBERON:0010009!1.10e-07!8;UBERON:0010011!1.10e-07!8;UBERON:0000454!1.10e-07!8;UBERON:0000956!1.77e-07!21;UBERON:0001869!1.77e-07!21;UBERON:0000203!1.77e-07!21;UBERON:0002240!6.93e-07!6;UBERON:0005174!6.93e-07!6;UBERON:0001137!6.93e-07!6;UBERON:0000153!7.09e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,7.85e-22,12;UBERON:0003057,7.85e-22,12;UBERON:0001017,1.48e-20,73;UBERON:0001016,6.78e-20,75;UBERON:0001049,1.02e-19,52;UBERON:0005068,1.02e-19,52;UBERON:0006241,1.02e-19,52;UBERON:0007135,1.02e-19,52;UBERON:0000073,7.56e-19,54;UBERON:0001948,3.98e-18,5;UBERON:0002315,3.98e-18,5;UBERON:0002346,2.57e-15,64;UBERON:0003075,2.57e-15,64;UBERON:0007284,2.57e-15,64;UBERON:0002240,4.63e-15,6;UBERON:0005174,4.63e-15,6;UBERON:0001137,4.63e-15,6;UBERON:0004121,8.45e-15,95;UBERON:0000924,8.45e-15,95;UBERON:0006601,8.45e-15,95;UBERON:0002020,1.03e-14,34;UBERON:0010371,5.78e-13,73;UBERON:0000955,9.68e-13,47;UBERON:0006238,9.68e-13,47;UBERON:0002257,2.52e-11,3;UBERON:0002616,3.13e-11,46;UBERON:0002420,1.60e-10,8;UBERON:0007245,1.60e-10,8;UBERON:0010009,1.60e-10,8;UBERON:0010011,1.60e-10,8;UBERON:0000454,1.60e-10,8;UBERON:0010314,1.65e-09,92;UBERON:0004733,9.63e-09,6;UBERON:0004732,9.63e-09,6;UBERON:0002028,9.63e-09,6;UBERON:0007277,9.63e-09,6;UBERON:0002256,1.87e-08,2;UBERON:0000025,6.83e-08,114;UBERON:0004111,4.08e-07,122;UBERON:0001896,4.76e-07,2;UBERON:0002298,4.76e-07,2;UBERON:0005290,4.76e-07,2;UBERON:0010096,4.76e-07,2;UBERON:0000369,6.85e-07,5;UBERON:0002435,6.85e-07,5;UBERON:0000204,6.85e-07,5;UBERON:0010082,6.85e-07,5;UBERON:0002780,9.33e-07,39;UBERON:0001890,9.33e-07,39;UBERON:0006240,9.33e-07,39 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0.315462165358238,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0.671130424230945,0,0,0,0,0,7.68802551266472,4.7609188134483,7.60597684207415,1.0165335962074,0,0,0,0,0.898800331555214,0.768436610643109,0.622137673850866,0.540023753326763,0.210324961351382,10.2834354385369,6.84692476950002,0.244981598429908,0.0958454710182364,0,0,0.510749352340751,0.614426133024974,4.87979264601717,4.02545631850602,3.64639359389732,1.11673199600552,2.25105044012672,0.916789486660861,5.89257170947335,6.12198227436143,3.16879057903011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,2.09446706813455,0,0.11981512450592,0,0,0.599162557619291,0.457500602818626,0.502617408451458,0.347648640384553,0.255715457330331,1.0389402227978,0.648965052271031,0,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0,0.476255494059295,0.512454881139399,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.828503090142008,0.938104239924385,0.180062061461015,0.710234206755631,0,0.154267112887378,0.232533944750408,0,0.116765342367169,0.16455984991348,0.164167464079095,0.162137619091711,0.146199987425332,0,0,0.420579897128254,0.617427674275707,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0,0,0,0,0,0,0.315270288212382,0,1.11618338060241,0,0,0,0,0,0,0,1.12385412991454,1.05490517932983,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,0,0,1.60660658210904,0,0,0,0,0,0.485561272309963,0.302323556964751,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0,0.178368817602071,0.329098041204242,1.2178597964584,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,0.460325236507177,1.14579102687879,0.68741272937475,1.37016503954128,0,0.675022500231806,0.45032120322422,0,0.51776031175182,0.31136204275253,0.399024873401031,1.53660245178721,0.243106717068294,0,0.551530525350042,0.222246727801615,0.824140228955577,0,0.252697211763798,0.50695859978048,0,0.280924522409647,0.128050304809739,0.229741875822453,0.476293691283074,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.376437521661322,0.592302255241736,0.182927972872773,0,0.407412341537585,0,0.118635018124174,0,0.818462086339379,0.464810523557898,0.192906610981141,1.49886346762768,0.233931608445408,0.214871054048298,0.382576664137687,0,0 | |||
|short_description=p3@Tmem163 | |||
}} |
Revision as of 18:41, 13 September 2013
Short description: | p3@Tmem163 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tmem163_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 123bp_to_NM_028135, uc007cku.1, uc011wqz.1_5end |
EntrezGene: | Tmem163 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.08e-23 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-23 | 23 |
neuron | 1.01e-15 | 33 |
neuronal stem cell | 1.01e-15 | 33 |
neuroblast | 1.01e-15 | 33 |
electrically signaling cell | 1.01e-15 | 33 |
electrically responsive cell | 6.71e-13 | 39 |
electrically active cell | 6.71e-13 | 39 |
granule cell | 1.14e-11 | 3 |
neural cell | 1.86e-11 | 43 |
neuron of the ventral spinal cord | 2.52e-11 | 3 |
striatum neuron | 3.19e-11 | 3 |
ectodermal cell | 3.89e-11 | 44 |
neurectodermal cell | 3.89e-11 | 44 |
neuron of the dorsal spinal cord | 1.87e-08 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.