FFCP PHASE1:Mm9::chr2:157388030..157388056,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=470|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:157388030..157388056,+|id=chr2:157388030..157388056,+|ontology_enrichment_celltype=CL:0000117!8.98e-23!23;CL:0000337!8.98e-23!23;CL:0000540!1.61e-17!33;CL:0000047!1.61e-17!33;CL:0000031!1.61e-17!33;CL:0000404!1.61e-17!33;CL:0002319!2.25e-15!43;CL:0000221!8.83e-15!44;CL:0000133!8.83e-15!44;CL:0000393!2.47e-13!39;CL:0000211!2.47e-13!39;CL:0000055!9.36e-12!50;CL:0002609!9.63e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,7.63e-40,23;CL:0000337,7.63e-40,23;CL:0000540,8.50e-27,33;CL:0000047,8.50e-27,33;CL:0000031,8.50e-27,33;CL:0000404,8.50e-27,33;CL:0000393,3.56e-22,39;CL:0000211,3.56e-22,39;CL:0002319,8.28e-20,43;CL:0000221,2.77e-19,44;CL:0000133,2.77e-19,44;CL:0002613,7.63e-12,3;CL:0000120,1.72e-11,3;CL:0002321,6.71e-11,70;CL:0002609,5.95e-09,6;CL:0000723,1.26e-07,91;CL:0000048,1.26e-07,91;CL:0002611,2.25e-07,2;CL:0000034,5.95e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.20e-18!102;UBERON:0000924!4.20e-18!102;UBERON:0006601!4.20e-18!102;UBERON:0002346!2.82e-16!71;UBERON:0003075!2.82e-16!71;UBERON:0007284!2.82e-16!71;UBERON:0001017!8.51e-16!73;UBERON:0005743!8.51e-16!73;UBERON:0000073!1.00e-15!75;UBERON:0001016!1.00e-15!75;UBERON:0001049!6.68e-12!52;UBERON:0005068!6.68e-12!52;UBERON:0006241!6.68e-12!52;UBERON:0007135!6.68e-12!52;UBERON:0003056!2.55e-11!49;UBERON:0002616!1.69e-10!49;UBERON:0000033!2.03e-10!63;UBERON:0000955!4.23e-10!50;UBERON:0006238!4.23e-10!50;UBERON:0002780!4.55e-10!39;UBERON:0001890!4.55e-10!39;UBERON:0006240!4.55e-10!39;UBERON:0000007!6.02e-10!8;UBERON:0003296!6.02e-10!8;UBERON:0010133!6.02e-10!8;UBERON:0003080!1.28e-09!40;UBERON:0001894!7.38e-09!10;UBERON:0006222!7.38e-09!10;UBERON:0002020!1.39e-07!34;UBERON:0002420!6.91e-07!8;UBERON:0007245!6.91e-07!8;UBERON:0010009!6.91e-07!8;UBERON:0010011!6.91e-07!8;UBERON:0000454!6.91e-07!8;UBERON:0000153!8.60e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.74e-28,8;UBERON:0003296,3.74e-28,8;UBERON:0010133,3.74e-28,8;UBERON:0000073,2.35e-27,54;UBERON:0001017,5.94e-26,73;UBERON:0001049,7.96e-26,52;UBERON:0005068,7.96e-26,52;UBERON:0006241,7.96e-26,52;UBERON:0007135,7.96e-26,52;UBERON:0001016,3.77e-25,75;UBERON:0002780,8.00e-23,39;UBERON:0001890,8.00e-23,39;UBERON:0006240,8.00e-23,39;UBERON:0001894,2.74e-22,10;UBERON:0006222,2.74e-22,10;UBERON:0003080,3.60e-22,40;UBERON:0002346,2.95e-20,64;UBERON:0003075,2.95e-20,64;UBERON:0007284,2.95e-20,64;UBERON:0004121,5.64e-19,95;UBERON:0000924,5.64e-19,95;UBERON:0006601,5.64e-19,95;UBERON:0002616,7.57e-19,46;UBERON:0000955,2.24e-18,47;UBERON:0006238,2.24e-18,47;UBERON:0003056,1.72e-17,49;UBERON:0010371,2.81e-17,73;UBERON:0002020,1.98e-14,34;UBERON:0010314,6.81e-13,92;UBERON:0001948,4.95e-11,5;UBERON:0002315,4.95e-11,5;UBERON:0002420,8.36e-11,8;UBERON:0007245,8.36e-11,8;UBERON:0010009,8.36e-11,8;UBERON:0010011,8.36e-11,8;UBERON:0000454,8.36e-11,8;UBERON:0000025,1.24e-09,114;UBERON:0002240,3.26e-09,6;UBERON:0005174,3.26e-09,6;UBERON:0001137,3.26e-09,6;UBERON:0004111,9.77e-09,122;UBERON:0003528,4.26e-08,29;UBERON:0002791,4.26e-08,29;UBERON:0001893,4.26e-08,29;UBERON:0002256,2.25e-07,2;UBERON:0000369,2.89e-07,5;UBERON:0002435,2.89e-07,5;UBERON:0000204,2.89e-07,5;UBERON:0010082,2.89e-07,5;UBERON:0011216,4.82e-07,194|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,3.23706337375356,6.87688273053643,2.53532561402472,0,0,0,0,0,0.599200221036809,0.384218305321555,1.34796496001021,1.89008313664367,0.420649922702764,1.71390590642282,1.54607978666129,2.57230678351403,1.62937300731002,0.919218786610021,2.20231761998777,0.383062014255563,0.307213066512487,6.59431438650969,5.12330804173494,4.16730696445408,1.67509799400829,1.12552522006336,0.916789486660861,0.883885756421003,2.70506193518296,2.98239113320481,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520455980298408,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0.494389935468748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628271760564322,0,0,0,0.162241263067758,0,0,0,0,0.390361328888111,0.459804208866946,0.180062129805349,0.452114453507145,0,0.12811372028485,0.374806898238915,0,0.646703978798527,0.945530400839096,0.527853372491847,0.219195732427575,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,0.321101179975584,0.117211686592203,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,8.17055053809091,2.34079422240703,2.71653235943784,3.64372959553707,9.04435191575595,6.42127743367454,4.44282355625727,2.43571959291679,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.512200817262403,1.21553358534147,0,0,0.44449345560323,0,0.320919209591815,0.505394423527595,0,0,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.347652977834566,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0,0.145346416632329,0.188218760830661,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0,0.409231043169689,0.154936841185966,0.578719832943424,0.499621155875892,0,0,0.191288332068843,0,0|short_description=p@chr2:157388030..157388056,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=470 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:157388030..157388056,+ | |||
|id=chr2:157388030..157388056,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.98e-23!23;CL:0000337!8.98e-23!23;CL:0000540!1.61e-17!33;CL:0000047!1.61e-17!33;CL:0000031!1.61e-17!33;CL:0000404!1.61e-17!33;CL:0002319!2.25e-15!43;CL:0000221!8.83e-15!44;CL:0000133!8.83e-15!44;CL:0000393!2.47e-13!39;CL:0000211!2.47e-13!39;CL:0000055!9.36e-12!50;CL:0002609!9.63e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.63e-40,23;CL:0000337,7.63e-40,23;CL:0000540,8.50e-27,33;CL:0000047,8.50e-27,33;CL:0000031,8.50e-27,33;CL:0000404,8.50e-27,33;CL:0000393,3.56e-22,39;CL:0000211,3.56e-22,39;CL:0002319,8.28e-20,43;CL:0000221,2.77e-19,44;CL:0000133,2.77e-19,44;CL:0002613,7.63e-12,3;CL:0000120,1.72e-11,3;CL:0002321,6.71e-11,70;CL:0002609,5.95e-09,6;CL:0000723,1.26e-07,91;CL:0000048,1.26e-07,91;CL:0002611,2.25e-07,2;CL:0000034,5.95e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.20e-18!102;UBERON:0000924!4.20e-18!102;UBERON:0006601!4.20e-18!102;UBERON:0002346!2.82e-16!71;UBERON:0003075!2.82e-16!71;UBERON:0007284!2.82e-16!71;UBERON:0001017!8.51e-16!73;UBERON:0005743!8.51e-16!73;UBERON:0000073!1.00e-15!75;UBERON:0001016!1.00e-15!75;UBERON:0001049!6.68e-12!52;UBERON:0005068!6.68e-12!52;UBERON:0006241!6.68e-12!52;UBERON:0007135!6.68e-12!52;UBERON:0003056!2.55e-11!49;UBERON:0002616!1.69e-10!49;UBERON:0000033!2.03e-10!63;UBERON:0000955!4.23e-10!50;UBERON:0006238!4.23e-10!50;UBERON:0002780!4.55e-10!39;UBERON:0001890!4.55e-10!39;UBERON:0006240!4.55e-10!39;UBERON:0000007!6.02e-10!8;UBERON:0003296!6.02e-10!8;UBERON:0010133!6.02e-10!8;UBERON:0003080!1.28e-09!40;UBERON:0001894!7.38e-09!10;UBERON:0006222!7.38e-09!10;UBERON:0002020!1.39e-07!34;UBERON:0002420!6.91e-07!8;UBERON:0007245!6.91e-07!8;UBERON:0010009!6.91e-07!8;UBERON:0010011!6.91e-07!8;UBERON:0000454!6.91e-07!8;UBERON:0000153!8.60e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.74e-28,8;UBERON:0003296,3.74e-28,8;UBERON:0010133,3.74e-28,8;UBERON:0000073,2.35e-27,54;UBERON:0001017,5.94e-26,73;UBERON:0001049,7.96e-26,52;UBERON:0005068,7.96e-26,52;UBERON:0006241,7.96e-26,52;UBERON:0007135,7.96e-26,52;UBERON:0001016,3.77e-25,75;UBERON:0002780,8.00e-23,39;UBERON:0001890,8.00e-23,39;UBERON:0006240,8.00e-23,39;UBERON:0001894,2.74e-22,10;UBERON:0006222,2.74e-22,10;UBERON:0003080,3.60e-22,40;UBERON:0002346,2.95e-20,64;UBERON:0003075,2.95e-20,64;UBERON:0007284,2.95e-20,64;UBERON:0004121,5.64e-19,95;UBERON:0000924,5.64e-19,95;UBERON:0006601,5.64e-19,95;UBERON:0002616,7.57e-19,46;UBERON:0000955,2.24e-18,47;UBERON:0006238,2.24e-18,47;UBERON:0003056,1.72e-17,49;UBERON:0010371,2.81e-17,73;UBERON:0002020,1.98e-14,34;UBERON:0010314,6.81e-13,92;UBERON:0001948,4.95e-11,5;UBERON:0002315,4.95e-11,5;UBERON:0002420,8.36e-11,8;UBERON:0007245,8.36e-11,8;UBERON:0010009,8.36e-11,8;UBERON:0010011,8.36e-11,8;UBERON:0000454,8.36e-11,8;UBERON:0000025,1.24e-09,114;UBERON:0002240,3.26e-09,6;UBERON:0005174,3.26e-09,6;UBERON:0001137,3.26e-09,6;UBERON:0004111,9.77e-09,122;UBERON:0003528,4.26e-08,29;UBERON:0002791,4.26e-08,29;UBERON:0001893,4.26e-08,29;UBERON:0002256,2.25e-07,2;UBERON:0000369,2.89e-07,5;UBERON:0002435,2.89e-07,5;UBERON:0000204,2.89e-07,5;UBERON:0010082,2.89e-07,5;UBERON:0011216,4.82e-07,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,3.23706337375356,6.87688273053643,2.53532561402472,0,0,0,0,0,0.599200221036809,0.384218305321555,1.34796496001021,1.89008313664367,0.420649922702764,1.71390590642282,1.54607978666129,2.57230678351403,1.62937300731002,0.919218786610021,2.20231761998777,0.383062014255563,0.307213066512487,6.59431438650969,5.12330804173494,4.16730696445408,1.67509799400829,1.12552522006336,0.916789486660861,0.883885756421003,2.70506193518296,2.98239113320481,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520455980298408,0,0,0.150722640552623,0.23517741427141,0.125666591329675,0.494389935468748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628271760564322,0,0,0,0.162241263067758,0,0,0,0,0.390361328888111,0.459804208866946,0.180062129805349,0.452114453507145,0,0.12811372028485,0.374806898238915,0,0.646703978798527,0.945530400839096,0.527853372491847,0.219195732427575,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,0.321101179975584,0.117211686592203,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,8.17055053809091,2.34079422240703,2.71653235943784,3.64372959553707,9.04435191575595,6.42127743367454,4.44282355625727,2.43571959291679,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.512200817262403,1.21553358534147,0,0,0.44449345560323,0,0.320919209591815,0.505394423527595,0,0,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0.347652977834566,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0,0.145346416632329,0.188218760830661,0.169229215783353,0,0,0.135804113845862,0,0.118635018124174,0,0.409231043169689,0.154936841185966,0.578719832943424,0.499621155875892,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr2:157388030..157388056,+ | |||
}} |
Revision as of 22:39, 13 September 2013
Short description: | p@chr2:157388030..157388056, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:157388030..157388056, + |
Coexpression cluster: | MCL_coexpression_mm9:470 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.63e-40 | 23 |
neuroblast (sensu Vertebrata) | 7.63e-40 | 23 |
neuron | 8.50e-27 | 33 |
neuronal stem cell | 8.50e-27 | 33 |
neuroblast | 8.50e-27 | 33 |
electrically signaling cell | 8.50e-27 | 33 |
electrically responsive cell | 3.56e-22 | 39 |
electrically active cell | 3.56e-22 | 39 |
neural cell | 8.28e-20 | 43 |
ectodermal cell | 2.77e-19 | 44 |
neurectodermal cell | 2.77e-19 | 44 |
striatum neuron | 7.63e-12 | 3 |
granule cell | 1.72e-11 | 3 |
embryonic cell | 6.71e-11 | 70 |
neuron of cerebral cortex | 5.95e-09 | 6 |
somatic stem cell | 1.26e-07 | 91 |
multi fate stem cell | 1.26e-07 | 91 |
neuron of the dorsal spinal cord | 2.25e-07 | 2 |
stem cell | 5.95e-07 | 97 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.