FFCP PHASE1:Mm9::chr5:108949049..108949074,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=168|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:108949049..108949074,-|id=chr5:108949049..108949074,-|ontology_enrichment_celltype=CL:0000117!8.17e-16!23;CL:0000337!8.17e-16!23;CL:0000540!1.13e-10!33;CL:0000047!1.13e-10!33;CL:0000031!1.13e-10!33;CL:0000404!1.13e-10!33;CL:0002319!1.44e-08!43;CL:0000221!3.02e-08!44;CL:0000133!3.02e-08!44;CL:0000393!3.24e-08!39;CL:0000211!3.24e-08!39|ontology_enrichment_celltype_v019_2=CL:0002610,3.07e-11,3;CL:0002614,1.62e-10,3;CL:0000117,3.19e-10,23;CL:0000337,3.19e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.23e-29!75;UBERON:0001016!2.23e-29!75;UBERON:0001049!9.66e-29!52;UBERON:0005068!9.66e-29!52;UBERON:0006241!9.66e-29!52;UBERON:0007135!9.66e-29!52;UBERON:0001017!6.63e-28!73;UBERON:0005743!6.63e-28!73;UBERON:0000955!6.44e-27!50;UBERON:0006238!6.44e-27!50;UBERON:0002616!1.25e-25!49;UBERON:0002020!8.00e-24!34;UBERON:0000033!5.14e-23!63;UBERON:0002346!7.14e-23!71;UBERON:0003075!7.14e-23!71;UBERON:0007284!7.14e-23!71;UBERON:0004121!2.99e-22!102;UBERON:0000924!2.99e-22!102;UBERON:0006601!2.99e-22!102;UBERON:0003080!1.57e-18!40;UBERON:0002791!4.15e-18!29;UBERON:0003528!4.15e-18!29;UBERON:0001893!4.15e-18!29;UBERON:0002780!1.82e-17!39;UBERON:0001890!1.82e-17!39;UBERON:0006240!1.82e-17!39;UBERON:0003056!2.66e-17!49;UBERON:0007811!7.91e-14!86;UBERON:0000956!1.12e-13!21;UBERON:0001869!1.12e-13!21;UBERON:0000203!1.12e-13!21;UBERON:0002619!8.53e-12!17;UBERON:0000153!9.98e-12!94;UBERON:0002021!2.27e-11!10;UBERON:0000411!2.27e-11!10;UBERON:0001950!2.27e-11!10;UBERON:0003076!4.78e-11!12;UBERON:0003057!4.78e-11!12;UBERON:0002298!2.12e-09!6;UBERON:0002240!9.81e-09!6;UBERON:0005174!9.81e-09!6;UBERON:0001137!9.81e-09!6;UBERON:0001948!2.66e-07!5;UBERON:0002315!2.66e-07!5;UBERON:0000025!2.78e-07!114;UBERON:0004111!9.61e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.96e-33,54;UBERON:0001049,2.19e-28,52;UBERON:0005068,2.19e-28,52;UBERON:0006241,2.19e-28,52;UBERON:0007135,2.19e-28,52;UBERON:0001017,5.34e-28,73;UBERON:0001016,3.96e-27,75;UBERON:0000955,1.94e-23,47;UBERON:0006238,1.94e-23,47;UBERON:0002346,3.00e-22,64;UBERON:0003075,3.00e-22,64;UBERON:0007284,3.00e-22,64;UBERON:0002616,2.19e-21,46;UBERON:0002020,1.06e-20,34;UBERON:0004121,1.95e-20,95;UBERON:0000924,1.95e-20,95;UBERON:0006601,1.95e-20,95;UBERON:0002021,1.77e-19,10;UBERON:0000411,1.77e-19,10;UBERON:0001950,1.77e-19,10;UBERON:0010371,5.77e-19,73;UBERON:0003080,5.58e-17,40;UBERON:0003528,4.77e-16,29;UBERON:0002791,4.77e-16,29;UBERON:0001893,4.77e-16,29;UBERON:0002780,2.88e-15,39;UBERON:0001890,2.88e-15,39;UBERON:0006240,2.88e-15,39;UBERON:0010314,3.91e-14,92;UBERON:0003056,2.84e-13,49;UBERON:0002950,3.81e-13,4;UBERON:0001891,3.81e-13,4;UBERON:0009616,3.81e-13,4;UBERON:0010286,3.81e-13,4;UBERON:0003076,8.50e-13,12;UBERON:0003057,8.50e-13,12;UBERON:0004684,3.07e-11,3;UBERON:0002275,3.07e-11,3;UBERON:0002619,5.73e-11,17;UBERON:0000956,8.15e-11,21;UBERON:0001869,8.15e-11,21;UBERON:0000203,8.15e-11,21;UBERON:0000025,1.53e-10,114;UBERON:0002038,1.62e-10,3;UBERON:0009663,1.62e-10,3;UBERON:0009661,1.62e-10,3;UBERON:0000125,1.62e-10,3;UBERON:0002308,1.62e-10,3;UBERON:0004111,1.48e-09,122;UBERON:0002240,8.16e-09,6;UBERON:0005174,8.16e-09,6;UBERON:0001137,8.16e-09,6;UBERON:0001896,1.08e-07,2;UBERON:0002298,1.08e-07,2;UBERON:0005290,1.08e-07,2;UBERON:0010096,1.08e-07,2;UBERON:0011216,1.63e-07,194|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.675029691658453,0,3.14216082844184,0.883474163806454,0.367472397644862,0.191690942036473,0,5.50579404996943,4.08599481872601,3.37934373163736,0,0.0914876436024097,0,5.30447698102624,1.12552522006336,3.81995619442025,1.47314292736834,1.85083185038834,0.372798891650601,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,17.8029700791437,0,0,0,0,1.49790639404823,1.37250180845588,0.125654352112864,1.21677024134594,2.30143911597297,2.0778804455956,1.29793010454206,0,0,0,0,0,0,0,0,0,0.12811372028485,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05046120976805,3.28192722458169,0,0,0,0,0,0,0,0,0,0,0.395287777946524,3.21321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0.220528398054962,0,0,0,0,0,0,4.26478194624172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.30162618253588,2.86447756719698,2.06223818812425,4.1104951186238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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=168 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:108949049..108949074,- | |||
|id=chr5:108949049..108949074,- | |||
|ontology_enrichment_celltype=CL:0000117!8.17e-16!23;CL:0000337!8.17e-16!23;CL:0000540!1.13e-10!33;CL:0000047!1.13e-10!33;CL:0000031!1.13e-10!33;CL:0000404!1.13e-10!33;CL:0002319!1.44e-08!43;CL:0000221!3.02e-08!44;CL:0000133!3.02e-08!44;CL:0000393!3.24e-08!39;CL:0000211!3.24e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,3.07e-11,3;CL:0002614,1.62e-10,3;CL:0000117,3.19e-10,23;CL:0000337,3.19e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.23e-29!75;UBERON:0001016!2.23e-29!75;UBERON:0001049!9.66e-29!52;UBERON:0005068!9.66e-29!52;UBERON:0006241!9.66e-29!52;UBERON:0007135!9.66e-29!52;UBERON:0001017!6.63e-28!73;UBERON:0005743!6.63e-28!73;UBERON:0000955!6.44e-27!50;UBERON:0006238!6.44e-27!50;UBERON:0002616!1.25e-25!49;UBERON:0002020!8.00e-24!34;UBERON:0000033!5.14e-23!63;UBERON:0002346!7.14e-23!71;UBERON:0003075!7.14e-23!71;UBERON:0007284!7.14e-23!71;UBERON:0004121!2.99e-22!102;UBERON:0000924!2.99e-22!102;UBERON:0006601!2.99e-22!102;UBERON:0003080!1.57e-18!40;UBERON:0002791!4.15e-18!29;UBERON:0003528!4.15e-18!29;UBERON:0001893!4.15e-18!29;UBERON:0002780!1.82e-17!39;UBERON:0001890!1.82e-17!39;UBERON:0006240!1.82e-17!39;UBERON:0003056!2.66e-17!49;UBERON:0007811!7.91e-14!86;UBERON:0000956!1.12e-13!21;UBERON:0001869!1.12e-13!21;UBERON:0000203!1.12e-13!21;UBERON:0002619!8.53e-12!17;UBERON:0000153!9.98e-12!94;UBERON:0002021!2.27e-11!10;UBERON:0000411!2.27e-11!10;UBERON:0001950!2.27e-11!10;UBERON:0003076!4.78e-11!12;UBERON:0003057!4.78e-11!12;UBERON:0002298!2.12e-09!6;UBERON:0002240!9.81e-09!6;UBERON:0005174!9.81e-09!6;UBERON:0001137!9.81e-09!6;UBERON:0001948!2.66e-07!5;UBERON:0002315!2.66e-07!5;UBERON:0000025!2.78e-07!114;UBERON:0004111!9.61e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.96e-33,54;UBERON:0001049,2.19e-28,52;UBERON:0005068,2.19e-28,52;UBERON:0006241,2.19e-28,52;UBERON:0007135,2.19e-28,52;UBERON:0001017,5.34e-28,73;UBERON:0001016,3.96e-27,75;UBERON:0000955,1.94e-23,47;UBERON:0006238,1.94e-23,47;UBERON:0002346,3.00e-22,64;UBERON:0003075,3.00e-22,64;UBERON:0007284,3.00e-22,64;UBERON:0002616,2.19e-21,46;UBERON:0002020,1.06e-20,34;UBERON:0004121,1.95e-20,95;UBERON:0000924,1.95e-20,95;UBERON:0006601,1.95e-20,95;UBERON:0002021,1.77e-19,10;UBERON:0000411,1.77e-19,10;UBERON:0001950,1.77e-19,10;UBERON:0010371,5.77e-19,73;UBERON:0003080,5.58e-17,40;UBERON:0003528,4.77e-16,29;UBERON:0002791,4.77e-16,29;UBERON:0001893,4.77e-16,29;UBERON:0002780,2.88e-15,39;UBERON:0001890,2.88e-15,39;UBERON:0006240,2.88e-15,39;UBERON:0010314,3.91e-14,92;UBERON:0003056,2.84e-13,49;UBERON:0002950,3.81e-13,4;UBERON:0001891,3.81e-13,4;UBERON:0009616,3.81e-13,4;UBERON:0010286,3.81e-13,4;UBERON:0003076,8.50e-13,12;UBERON:0003057,8.50e-13,12;UBERON:0004684,3.07e-11,3;UBERON:0002275,3.07e-11,3;UBERON:0002619,5.73e-11,17;UBERON:0000956,8.15e-11,21;UBERON:0001869,8.15e-11,21;UBERON:0000203,8.15e-11,21;UBERON:0000025,1.53e-10,114;UBERON:0002038,1.62e-10,3;UBERON:0009663,1.62e-10,3;UBERON:0009661,1.62e-10,3;UBERON:0000125,1.62e-10,3;UBERON:0002308,1.62e-10,3;UBERON:0004111,1.48e-09,122;UBERON:0002240,8.16e-09,6;UBERON:0005174,8.16e-09,6;UBERON:0001137,8.16e-09,6;UBERON:0001896,1.08e-07,2;UBERON:0002298,1.08e-07,2;UBERON:0005290,1.08e-07,2;UBERON:0010096,1.08e-07,2;UBERON:0011216,1.63e-07,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.675029691658453,0,3.14216082844184,0.883474163806454,0.367472397644862,0.191690942036473,0,5.50579404996943,4.08599481872601,3.37934373163736,0,0.0914876436024097,0,5.30447698102624,1.12552522006336,3.81995619442025,1.47314292736834,1.85083185038834,0.372798891650601,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,17.8029700791437,0,0,0,0,1.49790639404823,1.37250180845588,0.125654352112864,1.21677024134594,2.30143911597297,2.0778804455956,1.29793010454206,0,0,0,0,0,0,0,0,0,0.12811372028485,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05046120976805,3.28192722458169,0,0,0,0,0,0,0,0,0,0,0.395287777946524,3.21321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0.220528398054962,0,0,0,0,0,0,4.26478194624172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.30162618253588,2.86447756719698,2.06223818812425,4.11049511862385,0,2.70009000092722,0.900642406448441,1.81256963593682,2.07104124700728,0,0,0,0,0.209613162627982,0,0,0,0,0,0,0,0.0936415074698824,0.128050304809739,0,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.197008964751127,0,0,0,0,0,0.429742108096597,0.191288332068843,0,0.463735671240843 | |||
|short_description=p@chr5:108949049..108949074,- | |||
}} |
Revision as of 05:53, 14 September 2013
Short description: | p@chr5:108949049..108949074, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:108949049..108949074, - |
Coexpression cluster: | MCL_coexpression_mm9:168 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 3.07e-11 | 3 |
neuron of the substantia nigra | 1.62e-10 | 3 |
CNS neuron (sensu Vertebrata) | 3.19e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.19e-10 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.