FFCP PHASE1:Mm9::chr9:107302189..107302203,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56808|HGNC=|MCL_coexpression_id=401|UniProt=Q6PHS9,E9Q683,E9Q5D2|association_with_transcript=-7bp_to_ENSMUST00000085092,ENSMUST00000164988,ENSMUST00000168539,NM_001174047,NM_001174048,NM_001174049,NM_001174050,NM_020263,uc009rli.2,uc009rlj.2,uc012hae.1,uc012haf.1_5end|description=CAGE_peak_3_at_Cacna2d2_5end|id=chr9:107302189..107302203,+|ontology_enrichment_celltype=CL:0000117!2.06e-15!23;CL:0000337!2.06e-15!23;CL:0000540!1.25e-09!33;CL:0000047!1.25e-09!33;CL:0000031!1.25e-09!33;CL:0000404!1.25e-09!33;CL:0000393!2.71e-07!39;CL:0000211!2.71e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,9.66e-20,23;CL:0000337,9.66e-20,23;CL:0000540,6.64e-12,33;CL:0000047,6.64e-12,33;CL:0000031,6.64e-12,33;CL:0000404,6.64e-12,33;CL:0000393,3.82e-10,39;CL:0000211,3.82e-10,39;CL:0000221,2.26e-08,44;CL:0000133,2.26e-08,44;CL:0002319,7.97e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.42e-20!52;UBERON:0005068!3.42e-20!52;UBERON:0006241!3.42e-20!52;UBERON:0007135!3.42e-20!52;UBERON:0000033!4.27e-20!63;UBERON:0002346!8.95e-20!71;UBERON:0003075!8.95e-20!71;UBERON:0007284!8.95e-20!71;UBERON:0000955!2.53e-18!50;UBERON:0006238!2.53e-18!50;UBERON:0000073!6.12e-18!75;UBERON:0001016!6.12e-18!75;UBERON:0001017!6.15e-18!73;UBERON:0005743!6.15e-18!73;UBERON:0002616!7.63e-18!49;UBERON:0003056!7.23e-17!49;UBERON:0004121!2.84e-16!102;UBERON:0000924!2.84e-16!102;UBERON:0006601!2.84e-16!102;UBERON:0002020!5.04e-15!34;UBERON:0003080!1.55e-14!40;UBERON:0002780!6.58e-14!39;UBERON:0001890!6.58e-14!39;UBERON:0006240!6.58e-14!39;UBERON:0000025!2.10e-11!114;UBERON:0002791!2.80e-11!29;UBERON:0003528!2.80e-11!29;UBERON:0001893!2.80e-11!29;UBERON:0007811!2.46e-10!86;UBERON:0004111!3.90e-10!122;UBERON:0000153!1.89e-08!94;UBERON:0002420!7.10e-07!8;UBERON:0007245!7.10e-07!8;UBERON:0010009!7.10e-07!8;UBERON:0010011!7.10e-07!8;UBERON:0000454!7.10e-07!8;UBERON:0007100!8.58e-07!18;UBERON:0000948!8.58e-07!18;UBERON:0005498!8.58e-07!18;UBERON:0004140!8.58e-07!18;UBERON:0009881!8.58e-07!18;UBERON:0004141!8.58e-07!18;UBERON:0003084!8.58e-07!18;UBERON:0007005!8.58e-07!18;UBERON:0004139!8.58e-07!18;UBERON:0004291!8.58e-07!18|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.46e-24,54;UBERON:0010314,1.05e-23,92;UBERON:0001049,4.33e-22,52;UBERON:0005068,4.33e-22,52;UBERON:0006241,4.33e-22,52;UBERON:0007135,4.33e-22,52;UBERON:0001017,6.67e-22,73;UBERON:0001016,5.48e-21,75;UBERON:0002346,9.16e-20,64;UBERON:0003075,9.16e-20,64;UBERON:0007284,9.16e-20,64;UBERON:0002020,9.00e-19,34;UBERON:0004121,5.38e-18,95;UBERON:0000924,5.38e-18,95;UBERON:0006601,5.38e-18,95;UBERON:0010371,5.21e-17,73;UBERON:0000955,4.18e-16,47;UBERON:0006238,4.18e-16,47;UBERON:0002616,2.16e-15,46;UBERON:0000025,8.04e-14,114;UBERON:0004111,8.06e-13,122;UBERON:0003528,8.65e-13,29;UBERON:0002791,8.65e-13,29;UBERON:0001893,8.65e-13,29;UBERON:0003080,1.50e-12,40;UBERON:0003056,3.68e-12,49;UBERON:0002780,1.14e-11,39;UBERON:0001890,1.14e-11,39;UBERON:0006240,1.14e-11,39;UBERON:0003076,1.82e-11,12;UBERON:0003057,1.82e-11,12;UBERON:0002420,4.54e-11,8;UBERON:0007245,4.54e-11,8;UBERON:0010009,4.54e-11,8;UBERON:0010011,4.54e-11,8;UBERON:0000454,4.54e-11,8;UBERON:0002240,1.53e-09,6;UBERON:0005174,1.53e-09,6;UBERON:0001137,1.53e-09,6;UBERON:0001948,1.57e-08,5;UBERON:0002315,1.57e-08,5;UBERON:0000369,2.06e-07,5;UBERON:0002435,2.06e-07,5;UBERON:0000204,2.06e-07,5;UBERON:0010082,2.06e-07,5;UBERON:0007100,6.17e-07,18;UBERON:0000948,6.17e-07,18;UBERON:0005498,6.17e-07,18;UBERON:0004140,6.17e-07,18;UBERON:0009881,6.17e-07,18;UBERON:0004141,6.17e-07,18;UBERON:0003084,6.17e-07,18;UBERON:0007005,6.17e-07,18;UBERON:0004139,6.17e-07,18;UBERON:0004291,6.17e-07,18;UBERON:0000483,7.50e-07,174;UBERON:0003103,8.01e-07,43|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12608225377674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03134418455488,7.89034197352431,5.28990979272033,6.33831403506179,0,0,0,0,0,0,0,0.933206510776299,0.540023753326763,0.841299845405528,9.42648248532552,10.6016899656774,0.489963196859816,1.34183659425531,1.83843757322004,4.40463523997555,8.55505165170758,9.36999852863085,7.78129097608144,6.12967212136145,5.2091337055676,10.0505879640497,2.8138130501584,7.18151764551008,10.9012576625257,13.6676813567139,8.57437450796383,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.842666520790511,0,0,0,1.26759077799012,0,0,0,0,0,0,0.34255163915718,0,0.148442139064825,0,0.304465478312141,0.230615497256059,0.150722640552623,0,0.125666591329675,0,0.289198713839823,0,0.323533699894818,0,0,0,14.9318206475889,14.2423760633149,0,0,0,0,4.19413790333504,2.74500361691176,5.02617408451458,1.21677024134594,1.02286182932132,5.194701113989,4.54275536589721,0,0,0,0.631325567659422,0.260240885925407,0.229902104433473,0.360124259610698,0.452114453507145,0.748401490664606,1.0249097622788,2.99845518591132,3.3631438196072,0,0,0.175951124163949,0,0,0,0.205782136407943,0.796137067273973,0,0,0,19.6769483908727,7.03578179943289,5.94204802821349,7.81257627431194,3.54175617145327,4.01094493507183,2.55787339225449,2.95100741539581,1.40118410840603,0.822799249567402,0.32833492815819,0.405344047729279,2.19299981137998,0.439100230582101,0.805238512562231,0.841159794256509,1.02904612379284,0,0,0.213288250535234,0,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.379335801906163,0.571242563048644,1.1270773567308,1.01825663922657,0.581857461502877,0.49095073923223,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11626811780309,0.814824882210129,0.339490171550376,0.469380496577004,0.670025029767263,0,0.390267295715598,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,2.72936002979246,2.69586879162067,0,0,0,0.390438744296638,0,0,0,0,0.404810701674894,0,0,1.28528526568723,0,0.178065603667255,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0.517434735131018,0.214337035031592,0.532020700926821,1.96205699362278,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0,0,0.238744688006273,0,0,2.96680483216816,0,0.412773735926445,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0,0,0,0.26175594198403,0,0,0,1.79419855252775,0.66183396182839,0,0.129159823477731,0,0,0,0.209718688851422,0,0,0,0.202725215290164,0.102710957164827,0,0,0.198681354781265,0,0,0,0,0.100826185136841,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,1.89038500578056,2.74033007908257,0,2.02506750069542,2.2516060161211,2.26571204492102,3.62432218226274,0.31136204275253,1.99512436700516,2.04880326904961,0.486213434136588,0.209613162627982,0.367687016900028,0.44449345560323,0.618105171716683,0.64183841918363,0.758091635291392,0.50695859978048,1.13175804831646,0.655490552289177,0.832326981263301,0.746661096422973,0.952587382566147,1.27472758539341,1.73618298417335,0.824171801606613,1.17759136107518,0.685738504770831,0.354951612318675,1.1921809497366,0.872078499793971,0.282328141245992,0.338458431566706,0.914639864363863,0.263069711437843,1.08643291076689,1.68342681497322,1.54225523561426,0.886540341380071,0.818462086339379,0.309873682371932,0.771626443924566,1.49886346762768,0.701794825336225,0.429742108096597,0.57386499620653,0.220591419119515,0|short_description=p3@Cacna2d2}} | ||
|EntrezGene=56808 | |||
|HGNC= | |||
|MCL_coexpression_id=401 | |||
|UniProt=Q6PHS9,E9Q683,E9Q5D2 | |||
|association_with_transcript=-7bp_to_ENSMUST00000085092,ENSMUST00000164988,ENSMUST00000168539,NM_001174047,NM_001174048,NM_001174049,NM_001174050,NM_020263,uc009rli.2,uc009rlj.2,uc012hae.1,uc012haf.1_5end | |||
|description=CAGE_peak_3_at_Cacna2d2_5end | |||
|id=chr9:107302189..107302203,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.06e-15!23;CL:0000337!2.06e-15!23;CL:0000540!1.25e-09!33;CL:0000047!1.25e-09!33;CL:0000031!1.25e-09!33;CL:0000404!1.25e-09!33;CL:0000393!2.71e-07!39;CL:0000211!2.71e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.66e-20,23;CL:0000337,9.66e-20,23;CL:0000540,6.64e-12,33;CL:0000047,6.64e-12,33;CL:0000031,6.64e-12,33;CL:0000404,6.64e-12,33;CL:0000393,3.82e-10,39;CL:0000211,3.82e-10,39;CL:0000221,2.26e-08,44;CL:0000133,2.26e-08,44;CL:0002319,7.97e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.42e-20!52;UBERON:0005068!3.42e-20!52;UBERON:0006241!3.42e-20!52;UBERON:0007135!3.42e-20!52;UBERON:0000033!4.27e-20!63;UBERON:0002346!8.95e-20!71;UBERON:0003075!8.95e-20!71;UBERON:0007284!8.95e-20!71;UBERON:0000955!2.53e-18!50;UBERON:0006238!2.53e-18!50;UBERON:0000073!6.12e-18!75;UBERON:0001016!6.12e-18!75;UBERON:0001017!6.15e-18!73;UBERON:0005743!6.15e-18!73;UBERON:0002616!7.63e-18!49;UBERON:0003056!7.23e-17!49;UBERON:0004121!2.84e-16!102;UBERON:0000924!2.84e-16!102;UBERON:0006601!2.84e-16!102;UBERON:0002020!5.04e-15!34;UBERON:0003080!1.55e-14!40;UBERON:0002780!6.58e-14!39;UBERON:0001890!6.58e-14!39;UBERON:0006240!6.58e-14!39;UBERON:0000025!2.10e-11!114;UBERON:0002791!2.80e-11!29;UBERON:0003528!2.80e-11!29;UBERON:0001893!2.80e-11!29;UBERON:0007811!2.46e-10!86;UBERON:0004111!3.90e-10!122;UBERON:0000153!1.89e-08!94;UBERON:0002420!7.10e-07!8;UBERON:0007245!7.10e-07!8;UBERON:0010009!7.10e-07!8;UBERON:0010011!7.10e-07!8;UBERON:0000454!7.10e-07!8;UBERON:0007100!8.58e-07!18;UBERON:0000948!8.58e-07!18;UBERON:0005498!8.58e-07!18;UBERON:0004140!8.58e-07!18;UBERON:0009881!8.58e-07!18;UBERON:0004141!8.58e-07!18;UBERON:0003084!8.58e-07!18;UBERON:0007005!8.58e-07!18;UBERON:0004139!8.58e-07!18;UBERON:0004291!8.58e-07!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.46e-24,54;UBERON:0010314,1.05e-23,92;UBERON:0001049,4.33e-22,52;UBERON:0005068,4.33e-22,52;UBERON:0006241,4.33e-22,52;UBERON:0007135,4.33e-22,52;UBERON:0001017,6.67e-22,73;UBERON:0001016,5.48e-21,75;UBERON:0002346,9.16e-20,64;UBERON:0003075,9.16e-20,64;UBERON:0007284,9.16e-20,64;UBERON:0002020,9.00e-19,34;UBERON:0004121,5.38e-18,95;UBERON:0000924,5.38e-18,95;UBERON:0006601,5.38e-18,95;UBERON:0010371,5.21e-17,73;UBERON:0000955,4.18e-16,47;UBERON:0006238,4.18e-16,47;UBERON:0002616,2.16e-15,46;UBERON:0000025,8.04e-14,114;UBERON:0004111,8.06e-13,122;UBERON:0003528,8.65e-13,29;UBERON:0002791,8.65e-13,29;UBERON:0001893,8.65e-13,29;UBERON:0003080,1.50e-12,40;UBERON:0003056,3.68e-12,49;UBERON:0002780,1.14e-11,39;UBERON:0001890,1.14e-11,39;UBERON:0006240,1.14e-11,39;UBERON:0003076,1.82e-11,12;UBERON:0003057,1.82e-11,12;UBERON:0002420,4.54e-11,8;UBERON:0007245,4.54e-11,8;UBERON:0010009,4.54e-11,8;UBERON:0010011,4.54e-11,8;UBERON:0000454,4.54e-11,8;UBERON:0002240,1.53e-09,6;UBERON:0005174,1.53e-09,6;UBERON:0001137,1.53e-09,6;UBERON:0001948,1.57e-08,5;UBERON:0002315,1.57e-08,5;UBERON:0000369,2.06e-07,5;UBERON:0002435,2.06e-07,5;UBERON:0000204,2.06e-07,5;UBERON:0010082,2.06e-07,5;UBERON:0007100,6.17e-07,18;UBERON:0000948,6.17e-07,18;UBERON:0005498,6.17e-07,18;UBERON:0004140,6.17e-07,18;UBERON:0009881,6.17e-07,18;UBERON:0004141,6.17e-07,18;UBERON:0003084,6.17e-07,18;UBERON:0007005,6.17e-07,18;UBERON:0004139,6.17e-07,18;UBERON:0004291,6.17e-07,18;UBERON:0000483,7.50e-07,174;UBERON:0003103,8.01e-07,43 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12608225377674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03134418455488,7.89034197352431,5.28990979272033,6.33831403506179,0,0,0,0,0,0,0,0.933206510776299,0.540023753326763,0.841299845405528,9.42648248532552,10.6016899656774,0.489963196859816,1.34183659425531,1.83843757322004,4.40463523997555,8.55505165170758,9.36999852863085,7.78129097608144,6.12967212136145,5.2091337055676,10.0505879640497,2.8138130501584,7.18151764551008,10.9012576625257,13.6676813567139,8.57437450796383,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.842666520790511,0,0,0,1.26759077799012,0,0,0,0,0,0,0.34255163915718,0,0.148442139064825,0,0.304465478312141,0.230615497256059,0.150722640552623,0,0.125666591329675,0,0.289198713839823,0,0.323533699894818,0,0,0,14.9318206475889,14.2423760633149,0,0,0,0,4.19413790333504,2.74500361691176,5.02617408451458,1.21677024134594,1.02286182932132,5.194701113989,4.54275536589721,0,0,0,0.631325567659422,0.260240885925407,0.229902104433473,0.360124259610698,0.452114453507145,0.748401490664606,1.0249097622788,2.99845518591132,3.3631438196072,0,0,0.175951124163949,0,0,0,0.205782136407943,0.796137067273973,0,0,0,19.6769483908727,7.03578179943289,5.94204802821349,7.81257627431194,3.54175617145327,4.01094493507183,2.55787339225449,2.95100741539581,1.40118410840603,0.822799249567402,0.32833492815819,0.405344047729279,2.19299981137998,0.439100230582101,0.805238512562231,0.841159794256509,1.02904612379284,0,0,0.213288250535234,0,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.379335801906163,0.571242563048644,1.1270773567308,1.01825663922657,0.581857461502877,0.49095073923223,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11626811780309,0.814824882210129,0.339490171550376,0.469380496577004,0.670025029767263,0,0.390267295715598,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,2.72936002979246,2.69586879162067,0,0,0,0.390438744296638,0,0,0,0,0.404810701674894,0,0,1.28528526568723,0,0.178065603667255,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0.680879211507576,0.18006109403131,0.517434735131018,0.214337035031592,0.532020700926821,1.96205699362278,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0,0,0.238744688006273,0,0,2.96680483216816,0,0.412773735926445,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0,0,0,0.26175594198403,0,0,0,1.79419855252775,0.66183396182839,0,0.129159823477731,0,0,0,0.209718688851422,0,0,0,0.202725215290164,0.102710957164827,0,0,0.198681354781265,0,0,0,0,0.100826185136841,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,1.89038500578056,2.74033007908257,0,2.02506750069542,2.2516060161211,2.26571204492102,3.62432218226274,0.31136204275253,1.99512436700516,2.04880326904961,0.486213434136588,0.209613162627982,0.367687016900028,0.44449345560323,0.618105171716683,0.64183841918363,0.758091635291392,0.50695859978048,1.13175804831646,0.655490552289177,0.832326981263301,0.746661096422973,0.952587382566147,1.27472758539341,1.73618298417335,0.824171801606613,1.17759136107518,0.685738504770831,0.354951612318675,1.1921809497366,0.872078499793971,0.282328141245992,0.338458431566706,0.914639864363863,0.263069711437843,1.08643291076689,1.68342681497322,1.54225523561426,0.886540341380071,0.818462086339379,0.309873682371932,0.771626443924566,1.49886346762768,0.701794825336225,0.429742108096597,0.57386499620653,0.220591419119515,0 | |||
|short_description=p3@Cacna2d2 | |||
}} |
Revision as of 16:45, 14 September 2013
Short description: | p3@Cacna2d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cacna2d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:401 |
Association with transcript: | -7bp_to_ENSMUST00000085092, ENSMUST00000164988, ENSMUST00000168539, NM_001174047, NM_001174048, NM_001174049, NM_001174050, NM_020263, uc009rli.2, uc009rlj.2, uc012hae.1, uc012haf.1_5end |
EntrezGene: | Cacna2d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.66e-20 | 23 |
neuroblast (sensu Vertebrata) | 9.66e-20 | 23 |
neuron | 6.64e-12 | 33 |
neuronal stem cell | 6.64e-12 | 33 |
neuroblast | 6.64e-12 | 33 |
electrically signaling cell | 6.64e-12 | 33 |
electrically responsive cell | 3.82e-10 | 39 |
electrically active cell | 3.82e-10 | 39 |
ectodermal cell | 2.26e-08 | 44 |
neurectodermal cell | 2.26e-08 | 44 |
neural cell | 7.97e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.