FFCP PHASE1:Mm9::chr9:107302374..107302395,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=56808|HGNC=|MCL_coexpression_id=1|UniProt=Q6PHS9|association_with_transcript=-4bp_to_ENSMUST00000166799,ENSMUST00000170737_5end|description=CAGE_peak_2_at_Cacna2d2_5end|id=chr9:107302374..107302395,+|ontology_enrichment_celltype=CL:0000117!1.98e-13!23;CL:0000337!1.98e-13!23;CL:0000540!5.30e-08!33;CL:0000047!5.30e-08!33;CL:0000031!5.30e-08!33;CL:0000404!5.30e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-16,23;CL:0000337,1.24e-16,23;CL:0000540,3.16e-11,33;CL:0000047,3.16e-11,33;CL:0000031,3.16e-11,33;CL:0000404,3.16e-11,33;CL:0000393,1.09e-08,39;CL:0000211,1.09e-08,39;CL:0002319,2.07e-07,43;CL:0000221,3.94e-07,44;CL:0000133,3.94e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.41e-25!63;UBERON:0001049!2.22e-24!52;UBERON:0005068!2.22e-24!52;UBERON:0006241!2.22e-24!52;UBERON:0007135!2.22e-24!52;UBERON:0000955!6.00e-23!50;UBERON:0006238!6.00e-23!50;UBERON:0001017!2.68e-22!73;UBERON:0005743!2.68e-22!73;UBERON:0002616!3.18e-22!49;UBERON:0002346!6.28e-22!71;UBERON:0003075!6.28e-22!71;UBERON:0007284!6.28e-22!71;UBERON:0000073!8.11e-22!75;UBERON:0001016!8.11e-22!75;UBERON:0004121!3.03e-19!102;UBERON:0000924!3.03e-19!102;UBERON:0006601!3.03e-19!102;UBERON:0003056!4.04e-19!49;UBERON:0003080!4.59e-17!40;UBERON:0002780!2.88e-16!39;UBERON:0001890!2.88e-16!39;UBERON:0006240!2.88e-16!39;UBERON:0002020!5.88e-16!34;UBERON:0000153!1.18e-13!94;UBERON:0007811!1.24e-13!86;UBERON:0002791!2.48e-12!29;UBERON:0003528!2.48e-12!29;UBERON:0001893!2.48e-12!29;UBERON:0003076!5.40e-08!12;UBERON:0003057!5.40e-08!12;UBERON:0000025!1.45e-07!114;UBERON:0002420!3.13e-07!8;UBERON:0007245!3.13e-07!8;UBERON:0010009!3.13e-07!8;UBERON:0010011!3.13e-07!8;UBERON:0000454!3.13e-07!8;UBERON:0004111!3.53e-07!122;UBERON:0002619!4.73e-07!17;UBERON:0000956!4.86e-07!21;UBERON:0001869!4.86e-07!21;UBERON:0000203!4.86e-07!21;UBERON:0002021!5.13e-07!10;UBERON:0000411!5.13e-07!10;UBERON:0001950!5.13e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.47e-35,54;UBERON:0001017,6.63e-33,73;UBERON:0001049,3.04e-32,52;UBERON:0005068,3.04e-32,52;UBERON:0006241,3.04e-32,52;UBERON:0007135,3.04e-32,52;UBERON:0001016,1.15e-31,75;UBERON:0002346,3.48e-30,64;UBERON:0003075,3.48e-30,64;UBERON:0007284,3.48e-30,64;UBERON:0004121,3.14e-27,95;UBERON:0000924,3.14e-27,95;UBERON:0006601,3.14e-27,95;UBERON:0010371,2.39e-26,73;UBERON:0000955,1.25e-25,47;UBERON:0006238,1.25e-25,47;UBERON:0002616,1.84e-24,46;UBERON:0010314,2.19e-24,92;UBERON:0002020,1.05e-22,34;UBERON:0003056,5.31e-21,49;UBERON:0003080,8.55e-21,40;UBERON:0002780,1.69e-19,39;UBERON:0001890,1.69e-19,39;UBERON:0006240,1.69e-19,39;UBERON:0003528,1.80e-16,29;UBERON:0002791,1.80e-16,29;UBERON:0001893,1.80e-16,29;UBERON:0000025,1.45e-12,114;UBERON:0003076,3.73e-12,12;UBERON:0003057,3.73e-12,12;UBERON:0002420,5.88e-12,8;UBERON:0007245,5.88e-12,8;UBERON:0010009,5.88e-12,8;UBERON:0010011,5.88e-12,8;UBERON:0000454,5.88e-12,8;UBERON:0004111,9.77e-12,122;UBERON:0002021,1.44e-11,10;UBERON:0000411,1.44e-11,10;UBERON:0001950,1.44e-11,10;UBERON:0002240,1.70e-09,6;UBERON:0005174,1.70e-09,6;UBERON:0001137,1.70e-09,6;UBERON:0002619,1.17e-08,17;UBERON:0001948,3.29e-08,5;UBERON:0002315,3.29e-08,5;UBERON:0000956,9.29e-08,21;UBERON:0001869,9.29e-08,21;UBERON:0000203,9.29e-08,21;UBERON:0002950,1.59e-07,4;UBERON:0001891,1.59e-07,4;UBERON:0009616,1.59e-07,4;UBERON:0010286,1.59e-07,4;UBERON:0000369,1.63e-07,5;UBERON:0002435,1.63e-07,5;UBERON:0000204,1.63e-07,5;UBERON:0010082,1.63e-07,5;UBERON:0000483,8.02e-07,174|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0.171217968225505,0,0,0,0,0.202475267389826,0,0,0.274228867211478,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,7.40587370980846,3.1691570175309,0,0,0,0,0,0,0.768436610643109,0.207379224616955,0.405017814995072,0,8.56952953211411,8.83474163806454,0.489963196859816,0.766763768145891,0.919218786610021,11.0115880999389,13.5348578370299,15.5142598588806,6.4624280987795,5.85520919055422,4.16730696445408,15.0758819460746,11.8180148106653,14.0574387954665,10.9012576625257,10.5355043791336,6.52398060388552,0,0.302286240427142,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,1.86391761218122,12.5895742714965,12.9856958224342,0.255457055208591,0,0,0,13.3313669070292,8.23501085073528,2.76439574648302,2.25971616249959,2.81287003063364,10.5971902725376,8.59878694259116,0,0,0,1.05220927943237,0.130120442962704,0,0.360124259610698,0.60281927134286,0.884474488967262,1.2811372028485,1.49922759295566,4.9153640440413,0,0.378212160335639,0.527853372491847,0.657587197282725,0.278047249225598,0.696504333044333,0,0.199034266818493,0,0,0,2.27838349789052,1.64168241986767,2.70093092191522,0.23674473558521,1.37734962223183,1.54267112887378,0.232533944750408,0.804820204198858,0.350296027101508,0.329119699826961,0.164167464079095,0.324275238183423,0.438599962275997,0.439100230582101,0.268412837520744,2.10289948564127,1.64647379806855,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.397912944082302,0,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0.280543279561274,0.189709611372772,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,9.79358598925531,10.6662634798905,0,0,0,0,0,0,0,0,0,0.292255857911312,0,4.4984984299053,0,0.35613120733451,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,2.04263763452273,0.36012218806262,0.129358683782755,0.643011105094777,0.354680467284547,1.78368817602071,1.64549020602121,1.2178597964584,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,8.52956389248344,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0.436725127492355,0.134864346384821,0.0826534557253359,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0.496375471371293,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0.680191150845634,0,0.0897138566094757,0,0,0,0,0,0,1.6942555278512,1.38097570952153,3.43737308063638,3.26521046453006,4.11049511862385,3.7769694869485,1.35004500046361,1.80128481289688,2.26571204492102,2.07104124700728,0.207574695168353,0.798049746802062,0.682934423016537,0.729320151204882,0.209613162627982,0.919217542250071,0.44449345560323,1.03017528619447,0,1.01078884705519,1.2673964994512,0.565879024158229,1.03005658216871,1.08842759088278,0.861532034334199,0.952587382566147,1.15884325944855,0.964546102318525,0.824171801606613,0.588795680537589,0.342869252385415,0.887379030796687,1.90748951957857,0.581385666529314,0.658765662907314,1.01537529470012,0.73171189149109,0.789209134313529,1.08643291076689,0,0.711810108745045,0.492522411877817,0.409231043169689,0.619747364743864,1.15743966588685,1.49886346762768,0.701794825336225,0.214871054048298,0.57386499620653,0.220591419119515,0|short_description=p2@Cacna2d2}} | ||
|EntrezGene=56808 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q6PHS9 | |||
|association_with_transcript=-4bp_to_ENSMUST00000166799,ENSMUST00000170737_5end | |||
|description=CAGE_peak_2_at_Cacna2d2_5end | |||
|id=chr9:107302374..107302395,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.98e-13!23;CL:0000337!1.98e-13!23;CL:0000540!5.30e-08!33;CL:0000047!5.30e-08!33;CL:0000031!5.30e-08!33;CL:0000404!5.30e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-16,23;CL:0000337,1.24e-16,23;CL:0000540,3.16e-11,33;CL:0000047,3.16e-11,33;CL:0000031,3.16e-11,33;CL:0000404,3.16e-11,33;CL:0000393,1.09e-08,39;CL:0000211,1.09e-08,39;CL:0002319,2.07e-07,43;CL:0000221,3.94e-07,44;CL:0000133,3.94e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.41e-25!63;UBERON:0001049!2.22e-24!52;UBERON:0005068!2.22e-24!52;UBERON:0006241!2.22e-24!52;UBERON:0007135!2.22e-24!52;UBERON:0000955!6.00e-23!50;UBERON:0006238!6.00e-23!50;UBERON:0001017!2.68e-22!73;UBERON:0005743!2.68e-22!73;UBERON:0002616!3.18e-22!49;UBERON:0002346!6.28e-22!71;UBERON:0003075!6.28e-22!71;UBERON:0007284!6.28e-22!71;UBERON:0000073!8.11e-22!75;UBERON:0001016!8.11e-22!75;UBERON:0004121!3.03e-19!102;UBERON:0000924!3.03e-19!102;UBERON:0006601!3.03e-19!102;UBERON:0003056!4.04e-19!49;UBERON:0003080!4.59e-17!40;UBERON:0002780!2.88e-16!39;UBERON:0001890!2.88e-16!39;UBERON:0006240!2.88e-16!39;UBERON:0002020!5.88e-16!34;UBERON:0000153!1.18e-13!94;UBERON:0007811!1.24e-13!86;UBERON:0002791!2.48e-12!29;UBERON:0003528!2.48e-12!29;UBERON:0001893!2.48e-12!29;UBERON:0003076!5.40e-08!12;UBERON:0003057!5.40e-08!12;UBERON:0000025!1.45e-07!114;UBERON:0002420!3.13e-07!8;UBERON:0007245!3.13e-07!8;UBERON:0010009!3.13e-07!8;UBERON:0010011!3.13e-07!8;UBERON:0000454!3.13e-07!8;UBERON:0004111!3.53e-07!122;UBERON:0002619!4.73e-07!17;UBERON:0000956!4.86e-07!21;UBERON:0001869!4.86e-07!21;UBERON:0000203!4.86e-07!21;UBERON:0002021!5.13e-07!10;UBERON:0000411!5.13e-07!10;UBERON:0001950!5.13e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.47e-35,54;UBERON:0001017,6.63e-33,73;UBERON:0001049,3.04e-32,52;UBERON:0005068,3.04e-32,52;UBERON:0006241,3.04e-32,52;UBERON:0007135,3.04e-32,52;UBERON:0001016,1.15e-31,75;UBERON:0002346,3.48e-30,64;UBERON:0003075,3.48e-30,64;UBERON:0007284,3.48e-30,64;UBERON:0004121,3.14e-27,95;UBERON:0000924,3.14e-27,95;UBERON:0006601,3.14e-27,95;UBERON:0010371,2.39e-26,73;UBERON:0000955,1.25e-25,47;UBERON:0006238,1.25e-25,47;UBERON:0002616,1.84e-24,46;UBERON:0010314,2.19e-24,92;UBERON:0002020,1.05e-22,34;UBERON:0003056,5.31e-21,49;UBERON:0003080,8.55e-21,40;UBERON:0002780,1.69e-19,39;UBERON:0001890,1.69e-19,39;UBERON:0006240,1.69e-19,39;UBERON:0003528,1.80e-16,29;UBERON:0002791,1.80e-16,29;UBERON:0001893,1.80e-16,29;UBERON:0000025,1.45e-12,114;UBERON:0003076,3.73e-12,12;UBERON:0003057,3.73e-12,12;UBERON:0002420,5.88e-12,8;UBERON:0007245,5.88e-12,8;UBERON:0010009,5.88e-12,8;UBERON:0010011,5.88e-12,8;UBERON:0000454,5.88e-12,8;UBERON:0004111,9.77e-12,122;UBERON:0002021,1.44e-11,10;UBERON:0000411,1.44e-11,10;UBERON:0001950,1.44e-11,10;UBERON:0002240,1.70e-09,6;UBERON:0005174,1.70e-09,6;UBERON:0001137,1.70e-09,6;UBERON:0002619,1.17e-08,17;UBERON:0001948,3.29e-08,5;UBERON:0002315,3.29e-08,5;UBERON:0000956,9.29e-08,21;UBERON:0001869,9.29e-08,21;UBERON:0000203,9.29e-08,21;UBERON:0002950,1.59e-07,4;UBERON:0001891,1.59e-07,4;UBERON:0009616,1.59e-07,4;UBERON:0010286,1.59e-07,4;UBERON:0000369,1.63e-07,5;UBERON:0002435,1.63e-07,5;UBERON:0000204,1.63e-07,5;UBERON:0010082,1.63e-07,5;UBERON:0000483,8.02e-07,174 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0.140788722151667,0,0.171217968225505,0,0,0,0,0.202475267389826,0,0,0.274228867211478,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,7.40587370980846,3.1691570175309,0,0,0,0,0,0,0.768436610643109,0.207379224616955,0.405017814995072,0,8.56952953211411,8.83474163806454,0.489963196859816,0.766763768145891,0.919218786610021,11.0115880999389,13.5348578370299,15.5142598588806,6.4624280987795,5.85520919055422,4.16730696445408,15.0758819460746,11.8180148106653,14.0574387954665,10.9012576625257,10.5355043791336,6.52398060388552,0,0.302286240427142,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,1.86391761218122,12.5895742714965,12.9856958224342,0.255457055208591,0,0,0,13.3313669070292,8.23501085073528,2.76439574648302,2.25971616249959,2.81287003063364,10.5971902725376,8.59878694259116,0,0,0,1.05220927943237,0.130120442962704,0,0.360124259610698,0.60281927134286,0.884474488967262,1.2811372028485,1.49922759295566,4.9153640440413,0,0.378212160335639,0.527853372491847,0.657587197282725,0.278047249225598,0.696504333044333,0,0.199034266818493,0,0,0,2.27838349789052,1.64168241986767,2.70093092191522,0.23674473558521,1.37734962223183,1.54267112887378,0.232533944750408,0.804820204198858,0.350296027101508,0.329119699826961,0.164167464079095,0.324275238183423,0.438599962275997,0.439100230582101,0.268412837520744,2.10289948564127,1.64647379806855,0,0,0,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.397912944082302,0,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0.280543279561274,0.189709611372772,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,9.79358598925531,10.6662634798905,0,0,0,0,0,0,0,0,0,0.292255857911312,0,4.4984984299053,0,0.35613120733451,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,2.04263763452273,0.36012218806262,0.129358683782755,0.643011105094777,0.354680467284547,1.78368817602071,1.64549020602121,1.2178597964584,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,8.52956389248344,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0.436725127492355,0.134864346384821,0.0826534557253359,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0.496375471371293,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0.680191150845634,0,0.0897138566094757,0,0,0,0,0,0,1.6942555278512,1.38097570952153,3.43737308063638,3.26521046453006,4.11049511862385,3.7769694869485,1.35004500046361,1.80128481289688,2.26571204492102,2.07104124700728,0.207574695168353,0.798049746802062,0.682934423016537,0.729320151204882,0.209613162627982,0.919217542250071,0.44449345560323,1.03017528619447,0,1.01078884705519,1.2673964994512,0.565879024158229,1.03005658216871,1.08842759088278,0.861532034334199,0.952587382566147,1.15884325944855,0.964546102318525,0.824171801606613,0.588795680537589,0.342869252385415,0.887379030796687,1.90748951957857,0.581385666529314,0.658765662907314,1.01537529470012,0.73171189149109,0.789209134313529,1.08643291076689,0,0.711810108745045,0.492522411877817,0.409231043169689,0.619747364743864,1.15743966588685,1.49886346762768,0.701794825336225,0.214871054048298,0.57386499620653,0.220591419119515,0 | |||
|short_description=p2@Cacna2d2 | |||
}} |
Revision as of 16:45, 14 September 2013
Short description: | p2@Cacna2d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cacna2d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -4bp_to_ENSMUST00000166799, ENSMUST00000170737_5end |
EntrezGene: | Cacna2d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.24e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.24e-16 | 23 |
neuron | 3.16e-11 | 33 |
neuronal stem cell | 3.16e-11 | 33 |
neuroblast | 3.16e-11 | 33 |
electrically signaling cell | 3.16e-11 | 33 |
electrically responsive cell | 1.09e-08 | 39 |
electrically active cell | 1.09e-08 | 39 |
neural cell | 2.07e-07 | 43 |
ectodermal cell | 3.94e-07 | 44 |
neurectodermal cell | 3.94e-07 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.