FFCP PHASE1:Hg19::chr3:113557620..113557642,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54762 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25252 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-22bp_to_ENST00000498183_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_4_at_GRAMD1C_5end | |||
|id=chr3:113557620..113557642,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002138;4.00e-09;6!CL:0002139;1.59e-08;24!CL:0000775;2.34e-08;3!CL:0000094;6.60e-08;8!CL:0000236;1.12e-07;13!CL:0002618;4.00e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,3.35e-09,6;CL:0002138,3.35e-09,6;CL:0005022,3.35e-09,6;CL:0002139,1.72e-08,24;CL:0000775,1.94e-08,3;CL:0000094,5.94e-08,8;CL:0000236,2.88e-07,14;CL:0002618,3.06e-07,3;CL:0000115,5.80e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;4.00e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.56e-22!57;UBERON:0005068!4.56e-22!57;UBERON:0006241!4.56e-22!57;UBERON:0007135!4.56e-22!57;UBERON:0002780!1.42e-18!41;UBERON:0001890!1.42e-18!41;UBERON:0006240!1.42e-18!41;UBERON:0003075!3.74e-18!86;UBERON:0007284!3.74e-18!86;UBERON:0002616!4.80e-18!59;UBERON:0003080!1.18e-17!42;UBERON:0002020!7.30e-17!34;UBERON:0003528!7.30e-17!34;UBERON:0001893!1.52e-16!34;UBERON:0002346!2.08e-16!90;UBERON:0002791!4.96e-16!33;UBERON:0007023!8.94e-16!115;UBERON:0000955!1.20e-15!69;UBERON:0006238!1.20e-15!69;UBERON:0001869!1.33e-15!32;UBERON:0005743!2.39e-14!86;UBERON:0003056!5.63e-14!61;UBERON:0001017!8.26e-14!82;UBERON:0000073!1.76e-12!94;UBERON:0001016!1.76e-12!94;UBERON:0000956!6.66e-12!25;UBERON:0000203!6.66e-12!25;UBERON:0002619!1.90e-11!22;UBERON:0000033!3.98e-11!123;UBERON:0004111!1.40e-10!241;UBERON:0000153!1.59e-10!129;UBERON:0007811!1.59e-10!129;UBERON:0000025!1.99e-10!194;UBERON:0001950!4.11e-10!20;UBERON:0000477!2.40e-09!286;UBERON:0000119!6.54e-08!312;UBERON:0000483!1.11e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.13e-16;41!UBERON:0001890;8.13e-16;41!UBERON:0003528;3.16e-14;34!UBERON:0002020;3.16e-14;34!UBERON:0001869;2.28e-13;32!UBERON:0002791;2.30e-13;32!UBERON:0000073;3.00e-13;53!UBERON:0002616;3.00e-13;53!UBERON:0002298;5.77e-13;6!UBERON:0001893;1.76e-12;34!UBERON:0002619;4.81e-11;22!UBERON:0000125;7.28e-11;9!UBERON:0002308;7.28e-11;9!UBERON:0000956;1.90e-09;25!UBERON:0000203;1.90e-09;25!UBERON:0000178;2.71e-09;15!UBERON:0000179;2.71e-09;15!UBERON:0000463;2.71e-09;15!UBERON:0001950;2.90e-08;20!UBERON:0002420;6.58e-08;9!UBERON:0007245;6.58e-08;9!UBERON:0010009;6.58e-08;9!UBERON:0010011;6.58e-08;9!UBERON:0000454;6.58e-08;9!UBERON:0001017;1.42e-07;75!UBERON:0001896;1.68e-07;3!UBERON:0005290;1.68e-07;3!UBERON:0009663;2.06e-07;7!UBERON:0000955;2.44e-07;68!UBERON:0000988;4.00e-07;3!UBERON:0007023;7.24e-07;114!UBERON:0001473;9.87e-07;8!UBERON:0004536;9.87e-07;8!UBERON:0006558;9.87e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.90e-26,56;UBERON:0005068,5.90e-26,56;UBERON:0006241,5.90e-26,56;UBERON:0007135,5.90e-26,56;UBERON:0000073,6.37e-24,53;UBERON:0002616,6.37e-24,53;UBERON:0007023,2.55e-21,114;UBERON:0003075,2.28e-20,82;UBERON:0007284,2.28e-20,82;UBERON:0002780,3.49e-19,41;UBERON:0001890,3.49e-19,41;UBERON:0003080,3.49e-19,41;UBERON:0006240,3.49e-19,41;UBERON:0002346,5.36e-19,86;UBERON:0000955,4.19e-18,68;UBERON:0006238,4.19e-18,68;UBERON:0003528,1.09e-17,34;UBERON:0002020,1.09e-17,34;UBERON:0001017,1.82e-16,81;UBERON:0003056,3.39e-16,61;UBERON:0001893,1.55e-15,34;UBERON:0010371,2.89e-15,104;UBERON:0002791,6.02e-15,32;UBERON:0001869,7.15e-15,32;UBERON:0010314,1.01e-14,132;UBERON:0001016,4.93e-14,89;UBERON:0002298,7.58e-13,6;UBERON:0002619,2.59e-11,22;UBERON:0000125,7.03e-11,9;UBERON:0002308,7.03e-11,9;UBERON:0000956,1.12e-09,25;UBERON:0000203,1.12e-09,25;UBERON:0000178,3.20e-09,15;UBERON:0000179,3.20e-09,15;UBERON:0000463,3.20e-09,15;UBERON:0001950,1.75e-08,20;UBERON:0000025,2.21e-08,192;UBERON:0002420,4.38e-08,9;UBERON:0007245,4.38e-08,9;UBERON:0010009,4.38e-08,9;UBERON:0010011,4.38e-08,9;UBERON:0000454,4.38e-08,9;UBERON:0003076,6.00e-08,15;UBERON:0003057,6.00e-08,15;UBERON:0001896,9.22e-08,3;UBERON:0005290,9.22e-08,3;UBERON:0010096,9.22e-08,3;UBERON:0009663,1.68e-07,7;UBERON:0004111,2.20e-07,240;UBERON:0001473,8.67e-07,8;UBERON:0004536,8.67e-07,8;UBERON:0006558,8.67e-07,8;UBERON:0000988,9.25e-07,3 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0.984968464614303,0.204000691244253,0,0.572471974262113,0.273748850145768,0.502170558379211,0.687720651731561,0.985207073399349,0.787107813136792,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0.309868802321207,0.284338464974843,0.293600439334847,0.553995408531877,0.401088894940283,0,0,0,0,0.872389432677388,1.51150377475524,2.18325655069035,1.16214518452842,0,0,0,0.256160706529101,0.236482229888585,0.689491361473237,0.645484683583826,1.35426486594342,0.752969358170419,0.545812300115692,0.898893937780338,0.918251677112708,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0,0,0.209658645508376,0.112328631146495,0.300353785683013,0.16072558669708,0,0.39783335439818,0,0,2.73069305631066,0.889509253863555,0.426730222566507,2.00197993518006,1.72425731986345,3.30522436392431,0.954053754535364,1.70763890732835,1.76171156811282,3.82273228125229,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0,0,0,0,0,0,0.50133791063589,0,0,0,0.283604451492204,0,0.702678285545008,0.392937226493138,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,1.13061588384802,0.838998872419812,0.825354125820202,0.208994966536811,1.8089173141853,1.42306505074684,3.01248551488203,1.61131726843659,0.760272105718513,0,0.367663080345869,0,1.16089646769304,1.79623498100936,2.81528701208306,0,0,1.09921046358244,22.4026709641308,15.511210565933,0,0,0.633152558322899,0.264818361626438,0,0,0,0,0,0,1.48181739276657,0.980771418680752,0.151357427644931,0,0.468642863667593,0,1.1409436430889,0.149448680551801,0.469737994575059,0.647491777472526,0.842704840213491,0.408308342509787,0.491337269247072,0.103325781175765,0,0.247266929278557,0,0,0.673344455816265,0.750711119231785,0.277064115484183,0,0,0.150238058906597,0.226864366320042,1.07633781413317,0,0,0.600182192168805,0.309157587715317,0,0,0.506328996723799,0.194874010322397,1.00973509697646,0.184099797284599,0.161646056818812,1.06502877754984,0.403008392910561,0.169560592310488,0.386521706326594,0.272746120590835,0,0,0,0.232387885739037,0.207322110030741,0.252320850875628,0,1.56449532329816,0.643240938192885,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0.237270619111097,0,0,0,1.4763109092493,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0.185176890317059,0,0,1.44331342025273,0.579652024875384,0.117408694235822,0.144366447761074,1.38895653772983,2.28304982681518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0.784917590417525,0,0.66004457238855,0.258543431515556,3.57656445851882,0,0,0,0,0,0.266422179016099,0.285955987316295,0.542621605391443,0,0.325736184293735,0.710783897485092,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0.336255431980582,0,0,0,0.76228387266739,0,0,0,0,7.49007023947182,2.99161459204025,9.11714129559278,0.12269149171914,0.500170521059677,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0,0.173767228936166,0,0,0.413536052245775,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0.511707249066704,0,0,0.462629081407967,0,0.246381468041427,0,0.116210378459959,0,0.200506470303285,0,0,0.182091168006717,0,0.902399225814824,0.231046011313244,0,0,0.211103257785751,1.13733384070897,0.510281115829547,0.863663664408557,0,0.541892875087706,0,0.509752546090077,0,0.223874754722178,0,0,1.02580050046556,0,0.325378394664303,0.103041011647722,0,0.165018999841176,0,0,0,0.386682873168488,0.308097234229289,0.15350367472613,0.137836572484531,0,0.435050081742686,0.170453254832202,0,0,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0.6970372701606,0,0,0,0.9266210955196,0.715624433709956,0,0,0.38126038784765,0,0,0.318203247925937,0,0.179872457583315,0,0.353437207037059,0.202182481573316,0,0,0,0.243713489631284,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0,0,0.6196469961995,0.563391205064483,0.430234056612155,0.392996164052485,0.35667105148125,0,0,0,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0.229723400206959,4.56702848308952,7.64637207142375,5.69647187174163,4.76463550915578,1.23408681925858,3.8908398671563,3.24018862342869,2.37937552888281,0.427296284509893,0,0.245040215981032,0,0.144269212976445,0.0711418433484141,0,0,0,0.211673582723883,0,0,0,0,2.50634477090067,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,2.30584991324076,0.334330152832435,0,0.23874448473769,0,0,0.994147647766298,1.68803299692615,0.445234820091624,0,0,0.19924798825107,0.828851746593443,0.503865495708552,0.20453736500431,0,0.311039587661807,0.269605053441981,0.179021174675609,0,0.197286811273867,0,0,0,1.66982576691332,0,0,0,0,0,0.508507300585533,0.236387681767936,0,0,0.173624994933292,2.65722415744152,1.2059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| |||
|short_description=p4@GRAMD1C | |||
}} |
Revision as of 20:36, 21 January 2014
Short description: | p4@GRAMD1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GRAMD1C_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -22bp_to_ENST00000498183_5end |
EntrezGene: | GRAMD1C |
HGNC: | 25252 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 3.35e-09 | 6 |
endothelial cell of lymphatic vessel | 3.35e-09 | 6 |
vascular lymphangioblast | 3.35e-09 | 6 |
endothelial cell of vascular tree | 1.72e-08 | 24 |
neutrophil | 1.94e-08 | 3 |
granulocyte | 5.94e-08 | 8 |
B cell | 2.88e-07 | 14 |
endothelial cell of umbilical vein | 3.06e-07 | 3 |
endothelial cell | 5.80e-07 | 36 |