FFCP PHASE1:Mm9::chr11:44332455..44332460,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=74315|HGNC=|UniProt=Q5SWK7|association_with_transcript=-5bp_to_ENSMUST00000019333,NM_028862,uc007inh.2_5end|description=CAGE_peak_5_at_Rnf145_5end|id=chr11:44332455..44332460,+|ontology_enrichment_celltype=CL:0000117!1.76e-13!23;CL:0000337!1.76e-13!23;CL:0000221!4.82e-11!44;CL:0000133!4.82e-11!44;CL:0000055!9.23e-11!50;CL:0002319!1.36e-10!43;CL:0000393!1.85e-10!39;CL:0000211!1.85e-10!39;CL:0000540!1.06e-09!33;CL:0000047!1.06e-09!33;CL:0000031!1.06e-09!33;CL:0000404!1.06e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.80e-42,23;CL:0000337,1.80e-42,23;CL:0000540,2.26e-28,33;CL:0000047,2.26e-28,33;CL:0000031,2.26e-28,33;CL:0000404,2.26e-28,33;CL:0002319,2.76e-26,43;CL:0000221,1.38e-25,44;CL:0000133,1.38e-25,44;CL:0000393,2.22e-23,39;CL:0000211,2.22e-23,39;CL:0002321,3.17e-16,70;CL:0000034,3.95e-14,97;CL:0000723,5.30e-14,91;CL:0000048,5.30e-14,91;CL:0000120,9.94e-10,3;CL:0002613,2.08e-09,3;CL:0002614,6.72e-09,3;CL:0002609,1.38e-07,6;CL:0000878,1.87e-07,2;CL:0000129,1.87e-07,2;CL:0002611,3.05e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.19e-11!75;UBERON:0001016!1.19e-11!75;UBERON:0001017!9.18e-11!73;UBERON:0005743!9.18e-11!73;UBERON:0001049!1.30e-09!52;UBERON:0005068!1.30e-09!52;UBERON:0006241!1.30e-09!52;UBERON:0007135!1.30e-09!52;UBERON:0004121!2.59e-09!102;UBERON:0000924!2.59e-09!102;UBERON:0006601!2.59e-09!102;UBERON:0002346!2.28e-08!71;UBERON:0003075!2.28e-08!71;UBERON:0007284!2.28e-08!71;UBERON:0002020!1.37e-07!34;UBERON:0000955!1.79e-07!50;UBERON:0006238!1.79e-07!50;UBERON:0002616!3.76e-07!49;UBERON:0000033!6.11e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.93e-20,73;UBERON:0001016,9.25e-20,75;UBERON:0002020,9.77e-19,34;UBERON:0002420,1.13e-16,8;UBERON:0007245,1.13e-16,8;UBERON:0010009,1.13e-16,8;UBERON:0010011,1.13e-16,8;UBERON:0000454,1.13e-16,8;UBERON:0000073,1.38e-15,54;UBERON:0004121,1.58e-14,95;UBERON:0000924,1.58e-14,95;UBERON:0006601,1.58e-14,95;UBERON:0001049,2.60e-14,52;UBERON:0005068,2.60e-14,52;UBERON:0006241,2.60e-14,52;UBERON:0007135,2.60e-14,52;UBERON:0002240,9.34e-13,6;UBERON:0005174,9.34e-13,6;UBERON:0001137,9.34e-13,6;UBERON:0003528,8.69e-12,29;UBERON:0002791,8.69e-12,29;UBERON:0001893,8.69e-12,29;UBERON:0002346,6.51e-11,64;UBERON:0003075,6.51e-11,64;UBERON:0007284,6.51e-11,64;UBERON:0001948,1.76e-10,5;UBERON:0002315,1.76e-10,5;UBERON:0000369,1.57e-09,5;UBERON:0002435,1.57e-09,5;UBERON:0000204,1.57e-09,5;UBERON:0010082,1.57e-09,5;UBERON:0010371,4.21e-09,73;UBERON:0002038,6.72e-09,3;UBERON:0009663,6.72e-09,3;UBERON:0009661,6.72e-09,3;UBERON:0000125,6.72e-09,3;UBERON:0002308,6.72e-09,3;UBERON:0003076,1.52e-08,12;UBERON:0003057,1.52e-08,12;UBERON:0002780,3.58e-08,39;UBERON:0001890,3.58e-08,39;UBERON:0006240,3.58e-08,39;UBERON:0003080,6.53e-08,40;UBERON:0002616,7.91e-08,46;UBERON:0000955,1.31e-07,47;UBERON:0006238,1.31e-07,47;UBERON:0002256,3.05e-07,2;UBERON:0002950,8.84e-07,4;UBERON:0001891,8.84e-07,4;UBERON:0009616,8.84e-07,4;UBERON:0010286,8.84e-07,4|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0.129123323441576,0.281577444303333,0,0.171217968225505,0.319088635981346,0.684802919724823,0.174840804837995,0,0.404950534779652,1.39912375625629,0.473193248037357,0.137114433605739,1.27316895539409,0.425216450755349,0.0992909512008853,0,0,0,0,0.430761996159075,0,0,0,0,0.635030673459631,0,0,0,0.166234645358492,0.204169356262369,0.418531630736908,0.7813353445238,0.523523743973798,0.588231488031014,0,0.485510353031154,0.503587271902309,0.608261587317087,0.550640256485045,0,0.872100625521786,0.439372365468944,0.388859798148567,0.139986421625363,0,0.335565212115473,0,1.68046899571232,0.257259436035947,0.286533439938757,0.515672092277442,2.02316460859598,2.11596391708813,1.26766280701236,0.338844532069132,0,0.899899717281399,0.988866362566974,0,1.79760066311043,3.84218305321555,1.45165457231869,1.4850653216486,1.05162480675691,3.71346279724945,1.54607978666129,0.857435594504678,1.15014565221884,0.919218786610021,0,1.78762273319263,1.38245879930619,1.05509030184155,2.8361169516747,1.56274011167028,1.11673199600552,1.68828783009504,1.06958773443767,2.94628585473668,2.42031857358475,0.745597783301202,0.908714319998209,0.906858721281426,0.579728977403356,0,0,0,0,0,0.140444420131752,0.340860645156116,0.259786004602869,0,0.845060518660083,0,0,7.11066703153331,0.865964164044856,0.506719730950197,0,0.11418387971906,0.517875767294343,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0.23517741427141,0.376999773989026,0.247194967734374,0,0,0,0.220841518460394,0.484875253135222,0,0.292780797011547,1.25668024088073,0,0.479260498023681,0,0.127070227073065,0.299581278809645,0,1.38219787324151,0.347648640384553,1.27857728665165,0.41557608911912,0.324482526135515,0.203678727700633,0.124406970610093,0.505445516867349,0,0.520481771850815,0.229902104433473,0.360124259610698,0.452114453507145,0.476255494059295,0.12811372028485,0.281105173679186,0.517406741478031,0.431135985865684,0.189106080167819,0.175951124163949,0,0,0,0.61734640922383,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0,0.467061369468678,0.329119699826961,0.164167464079095,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.630869845692382,0.720332286654991,0,0.264450566663544,0,0.464473343720877,0,0,0,0,0,0,0.502670417600539,0.198956472041151,0,0,0.216138049874694,0,0.569003702859245,0.342745537829186,0,0.203651327845314,0,0.280543279561274,0.189709611372772,0.147610147979602,0,0.123397163921801,0.296452627087149,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.25462585178142,0.287696137450811,0.162135226775035,0.549122826376163,0,0,0.624075346229121,0,0.179397413521912,0,0.923765950833023,0.189491411770485,0.651859905768103,0.169745085775188,0,0,0.238043640886014,0.780534591431195,0,0,0.159454768657487,0,0.172684981865896,0.578596234326046,0,0,0,0,0.481651769963376,0.468846746368813,0.163934945376675,0,0.315508219416257,0.390438744296638,0.430846795465598,0.238968797952552,0,0.283076530788832,0,0,0.395287777946524,0.642642632843614,0.141940085208269,0.534196811001766,0.162886959353576,0,0,0.485561272309963,0.302323556964751,0,0,0,0.258428293168221,0,0.712994756769443,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0,0.886701168211368,0.713475270408282,0.658196082408484,0.608929898229199,0.23467170806371,0.21183207086382,0,0.65954501176592,0.322928853391811,0.361877549568935,0.238744688006273,0.164140899745061,0,1.11255181206306,0.341741761595705,0.619160603889667,0,0.565105371014073,0.546776910884101,0,0.679913719975421,0.419854356970974,0.690999869022119,0,0.158167996790568,0.203319467126849,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.41326727862668,0,0.129614973291793,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.129159823477731,0.337912250981556,0.704143431874524,0.13020438484395,0.838874755405687,0.483168241652012,0.288030006257865,0.632022241256357,0.202725215290164,0,0.129920822977795,0,0.596044064343795,0.360586348559907,0.147689527174577,0.302899349844443,0.609654453239999,0.403304740547362,0.0974578807397524,0.577271049841977,0.350630706544707,0,1.10992976687032,0.269141569828427,0.335769232728157,0.386379188064381,0.187682475451182,0.183151624267265,0,0,1.6942555278512,0,0,0.343706364687375,0,0,0.675022500231806,0,0,0.51776031175182,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0,0.565879024158229,0.468207537349412,0.320125762024346,0.516919220600519,0,0.231768651889711,0.38581844092741,0.412085900803307,0.441596760403192,0.342869252385415,0,0.715308569841963,0.145346416632329,0.470546902076653,0.507687647350059,0,0,0.407412341537585,0,0.711810108745045,0.29551344712669,0,0.619747364743864,0.578719832943424,0,0,0.214871054048298,0.57386499620653,0.220591419119515,0|short_description=p5@Rnf145}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:74315 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5SWK7 | |||
|association_with_transcript=-5bp_to_ENSMUST00000019333,NM_028862,uc007inh.2_5end | |||
|cluster_id=chr11:44332455..44332460,+ | |||
|description=CAGE_peak_5_at_Rnf145_5end | |||
|id=chr11:44332455..44332460,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.76e-13!23;CL:0000337!1.76e-13!23;CL:0000221!4.82e-11!44;CL:0000133!4.82e-11!44;CL:0000055!9.23e-11!50;CL:0002319!1.36e-10!43;CL:0000393!1.85e-10!39;CL:0000211!1.85e-10!39;CL:0000540!1.06e-09!33;CL:0000047!1.06e-09!33;CL:0000031!1.06e-09!33;CL:0000404!1.06e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.80e-42,23;CL:0000337,1.80e-42,23;CL:0000540,2.26e-28,33;CL:0000047,2.26e-28,33;CL:0000031,2.26e-28,33;CL:0000404,2.26e-28,33;CL:0002319,2.76e-26,43;CL:0000221,1.38e-25,44;CL:0000133,1.38e-25,44;CL:0000393,2.22e-23,39;CL:0000211,2.22e-23,39;CL:0002321,3.17e-16,70;CL:0000034,3.95e-14,97;CL:0000723,5.30e-14,91;CL:0000048,5.30e-14,91;CL:0000120,9.94e-10,3;CL:0002613,2.08e-09,3;CL:0002614,6.72e-09,3;CL:0002609,1.38e-07,6;CL:0000878,1.87e-07,2;CL:0000129,1.87e-07,2;CL:0002611,3.05e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.19e-11!75;UBERON:0001016!1.19e-11!75;UBERON:0001017!9.18e-11!73;UBERON:0005743!9.18e-11!73;UBERON:0001049!1.30e-09!52;UBERON:0005068!1.30e-09!52;UBERON:0006241!1.30e-09!52;UBERON:0007135!1.30e-09!52;UBERON:0004121!2.59e-09!102;UBERON:0000924!2.59e-09!102;UBERON:0006601!2.59e-09!102;UBERON:0002346!2.28e-08!71;UBERON:0003075!2.28e-08!71;UBERON:0007284!2.28e-08!71;UBERON:0002020!1.37e-07!34;UBERON:0000955!1.79e-07!50;UBERON:0006238!1.79e-07!50;UBERON:0002616!3.76e-07!49;UBERON:0000033!6.11e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.93e-20,73;UBERON:0001016,9.25e-20,75;UBERON:0002020,9.77e-19,34;UBERON:0002420,1.13e-16,8;UBERON:0007245,1.13e-16,8;UBERON:0010009,1.13e-16,8;UBERON:0010011,1.13e-16,8;UBERON:0000454,1.13e-16,8;UBERON:0000073,1.38e-15,54;UBERON:0004121,1.58e-14,95;UBERON:0000924,1.58e-14,95;UBERON:0006601,1.58e-14,95;UBERON:0001049,2.60e-14,52;UBERON:0005068,2.60e-14,52;UBERON:0006241,2.60e-14,52;UBERON:0007135,2.60e-14,52;UBERON:0002240,9.34e-13,6;UBERON:0005174,9.34e-13,6;UBERON:0001137,9.34e-13,6;UBERON:0003528,8.69e-12,29;UBERON:0002791,8.69e-12,29;UBERON:0001893,8.69e-12,29;UBERON:0002346,6.51e-11,64;UBERON:0003075,6.51e-11,64;UBERON:0007284,6.51e-11,64;UBERON:0001948,1.76e-10,5;UBERON:0002315,1.76e-10,5;UBERON:0000369,1.57e-09,5;UBERON:0002435,1.57e-09,5;UBERON:0000204,1.57e-09,5;UBERON:0010082,1.57e-09,5;UBERON:0010371,4.21e-09,73;UBERON:0002038,6.72e-09,3;UBERON:0009663,6.72e-09,3;UBERON:0009661,6.72e-09,3;UBERON:0000125,6.72e-09,3;UBERON:0002308,6.72e-09,3;UBERON:0003076,1.52e-08,12;UBERON:0003057,1.52e-08,12;UBERON:0002780,3.58e-08,39;UBERON:0001890,3.58e-08,39;UBERON:0006240,3.58e-08,39;UBERON:0003080,6.53e-08,40;UBERON:0002616,7.91e-08,46;UBERON:0000955,1.31e-07,47;UBERON:0006238,1.31e-07,47;UBERON:0002256,3.05e-07,2;UBERON:0002950,8.84e-07,4;UBERON:0001891,8.84e-07,4;UBERON:0009616,8.84e-07,4;UBERON:0010286,8.84e-07,4 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0.129123323441576,0.281577444303333,0,0.171217968225505,0.319088635981346,0.684802919724823,0.174840804837995,0,0.404950534779652,1.39912375625629,0.473193248037357,0.137114433605739,1.27316895539409,0.425216450755349,0.0992909512008853,0,0,0,0,0.430761996159075,0,0,0,0,0.635030673459631,0,0,0,0.166234645358492,0.204169356262369,0.418531630736908,0.7813353445238,0.523523743973798,0.588231488031014,0,0.485510353031154,0.503587271902309,0.608261587317087,0.550640256485045,0,0.872100625521786,0.439372365468944,0.388859798148567,0.139986421625363,0,0.335565212115473,0,1.68046899571232,0.257259436035947,0.286533439938757,0.515672092277442,2.02316460859598,2.11596391708813,1.26766280701236,0.338844532069132,0,0.899899717281399,0.988866362566974,0,1.79760066311043,3.84218305321555,1.45165457231869,1.4850653216486,1.05162480675691,3.71346279724945,1.54607978666129,0.857435594504678,1.15014565221884,0.919218786610021,0,1.78762273319263,1.38245879930619,1.05509030184155,2.8361169516747,1.56274011167028,1.11673199600552,1.68828783009504,1.06958773443767,2.94628585473668,2.42031857358475,0.745597783301202,0.908714319998209,0.906858721281426,0.579728977403356,0,0,0,0,0,0.140444420131752,0.340860645156116,0.259786004602869,0,0.845060518660083,0,0,7.11066703153331,0.865964164044856,0.506719730950197,0,0.11418387971906,0.517875767294343,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0.23517741427141,0.376999773989026,0.247194967734374,0,0,0,0.220841518460394,0.484875253135222,0,0.292780797011547,1.25668024088073,0,0.479260498023681,0,0.127070227073065,0.299581278809645,0,1.38219787324151,0.347648640384553,1.27857728665165,0.41557608911912,0.324482526135515,0.203678727700633,0.124406970610093,0.505445516867349,0,0.520481771850815,0.229902104433473,0.360124259610698,0.452114453507145,0.476255494059295,0.12811372028485,0.281105173679186,0.517406741478031,0.431135985865684,0.189106080167819,0.175951124163949,0,0,0,0.61734640922383,0.199034266818493,0,0,0,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0,0.467061369468678,0.329119699826961,0.164167464079095,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.630869845692382,0.720332286654991,0,0.264450566663544,0,0.464473343720877,0,0,0,0,0,0,0.502670417600539,0.198956472041151,0,0,0.216138049874694,0,0.569003702859245,0.342745537829186,0,0.203651327845314,0,0.280543279561274,0.189709611372772,0.147610147979602,0,0.123397163921801,0.296452627087149,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.25462585178142,0.287696137450811,0.162135226775035,0.549122826376163,0,0,0.624075346229121,0,0.179397413521912,0,0.923765950833023,0.189491411770485,0.651859905768103,0.169745085775188,0,0,0.238043640886014,0.780534591431195,0,0,0.159454768657487,0,0.172684981865896,0.578596234326046,0,0,0,0,0.481651769963376,0.468846746368813,0.163934945376675,0,0.315508219416257,0.390438744296638,0.430846795465598,0.238968797952552,0,0.283076530788832,0,0,0.395287777946524,0.642642632843614,0.141940085208269,0.534196811001766,0.162886959353576,0,0,0.485561272309963,0.302323556964751,0,0,0,0.258428293168221,0,0.712994756769443,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0,0.886701168211368,0.713475270408282,0.658196082408484,0.608929898229199,0.23467170806371,0.21183207086382,0,0.65954501176592,0.322928853391811,0.361877549568935,0.238744688006273,0.164140899745061,0,1.11255181206306,0.341741761595705,0.619160603889667,0,0.565105371014073,0.546776910884101,0,0.679913719975421,0.419854356970974,0.690999869022119,0,0.158167996790568,0.203319467126849,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.41326727862668,0,0.129614973291793,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.129159823477731,0.337912250981556,0.704143431874524,0.13020438484395,0.838874755405687,0.483168241652012,0.288030006257865,0.632022241256357,0.202725215290164,0,0.129920822977795,0,0.596044064343795,0.360586348559907,0.147689527174577,0.302899349844443,0.609654453239999,0.403304740547362,0.0974578807397524,0.577271049841977,0.350630706544707,0,1.10992976687032,0.269141569828427,0.335769232728157,0.386379188064381,0.187682475451182,0.183151624267265,0,0,1.6942555278512,0,0,0.343706364687375,0,0,0.675022500231806,0,0,0.51776031175182,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0,0.565879024158229,0.468207537349412,0.320125762024346,0.516919220600519,0,0.231768651889711,0.38581844092741,0.412085900803307,0.441596760403192,0.342869252385415,0,0.715308569841963,0.145346416632329,0.470546902076653,0.507687647350059,0,0,0.407412341537585,0,0.711810108745045,0.29551344712669,0,0.619747364743864,0.578719832943424,0,0,0.214871054048298,0.57386499620653,0.220591419119515,0 | |||
|short_description=p5@Rnf145 | |||
}} |
Revision as of 22:22, 5 August 2015
Short description: | p5@Rnf145 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rnf145_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENSMUST00000019333, NM_028862, uc007inh.2_5end |
EntrezGene: | 74315 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.80e-42 | 23 |
neuroblast (sensu Vertebrata) | 1.80e-42 | 23 |
neuron | 2.26e-28 | 33 |
neuronal stem cell | 2.26e-28 | 33 |
neuroblast | 2.26e-28 | 33 |
electrically signaling cell | 2.26e-28 | 33 |
neural cell | 2.76e-26 | 43 |
ectodermal cell | 1.38e-25 | 44 |
neurectodermal cell | 1.38e-25 | 44 |
electrically responsive cell | 2.22e-23 | 39 |
electrically active cell | 2.22e-23 | 39 |
embryonic cell | 3.17e-16 | 70 |
stem cell | 3.95e-14 | 97 |
somatic stem cell | 5.30e-14 | 91 |
multi fate stem cell | 5.30e-14 | 91 |
granule cell | 9.94e-10 | 3 |
striatum neuron | 2.08e-09 | 3 |
neuron of the substantia nigra | 6.72e-09 | 3 |
neuron of cerebral cortex | 1.38e-07 | 6 |
central nervous system macrophage | 1.87e-07 | 2 |
microglial cell | 1.87e-07 | 2 |
neuron of the dorsal spinal cord | 3.05e-07 | 2 |