FF:10303-104H6

Name:
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information strain NA tissue olfactory epithelium dev stage NA sex male age NA cell type CELL MIXTURE - tissue sample cell line NA company NA collaboration Alessandro Bonetti External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number 2-Oe catalog number NA sample type total RNA extraction protocol (Details) OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS
Hg19 BAM CTSS [{{{hg19bam}}} download] [{{{hg19ctss}}} donwload] Hg38 BAM CTSS [{{{hg38bam}}} download] [{{{hg38ctss}}} donwload]

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

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JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>

FANTOM5 (FF) ontology

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Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011164 olfactory epithelium

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000922 (embryo)
0001997 (olfactory epithelium)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0002346 (neurectoderm)
0000344 (mucosa)
0002268 (olfactory organ)
0000064 (organ part)
0000073 (regional part of nervous system)
0000466 (immaterial anatomical entity)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004802 (respiratory tract epithelium)
0005911 (endo-epithelium)
0004923 (organ component layer)
0005423 (developing anatomical structure)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0005291 (embryonic tissue)
0000020 (sense organ)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0000072 (segment of respiratory tract)
0000488 (atypical epithelium)
0004785 (respiratory system mucosa)
0004807 (respiratory system epithelium)
0005384 (nasal cavity epithelium)
0006934 (sensory epithelium)
0001032 (sensory system)
0000464 (anatomical space)
0005085 (ectodermal placode)
0007497 (developing epithelial placode)
0009955 (neurogenic placode)
0002546 (cranial placode)
0001048 (primordium)
0000925 (endoderm)
0006598 (presumptive structure)
0004814 (upper respiratory tract epithelium)
0002532 (epiblast (generic))
0000065 (respiratory tract)
0000010 (peripheral nervous system)
0001004 (respiratory system)
0004089 (midface)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0004456 (entire sense organ system)
0001456 (face)
0000004 (olfactory apparatus)
0001557 (upper respiratory tract)
0001707 (nasal cavity)
0001826 (nasal cavity mucosa)
0000076 (external ectoderm)
0003050 (olfactory placode)
0006601 (presumptive ectoderm)
0006595 (presumptive endoderm)
0005870 (olfactory pit)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA