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|coexpression_dpi_cluster_scores_median=0,0,0,0.0653051624661445,0,0,0,0.360069300129636,0.402364682676723,0.55324078965696,0.292670925796358,0.169860380996303,0.355510967373169,0.375582222012904,0.0340670197411913,0.0800761525331175,0,0.26366465439556,0.374524774111348,0.266885070731364,0.0354470656487682,0,0.00998500061204874,0.0644551523736777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308882351310436,0.411093422860676,0.729911149804404,0,0,0,0.0305581567893783,0,0.213207239280454,0,0,0,0,0,0,0,0,0,0.0334413538646586,0.146799018402258,0.273655832422567,0,0.0397493170902889,0,0.322458878535173,0.247021199245269,0.164596587144155,0.129160424877509,0.0729756721489083,0,0.19266946376396,0.103094123085233,0.11634867512411,0.288699787123122,0.218702986939684,0.0881462836056141,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.078470362888384,0.308724770844538,0,0,0,0,0,0,0.0479123250068257,0,0.0586534975690397,0,0.0156583438193949,0.109409152240798,0,0,0.273774759912798,0.264295134298998,0.049341225343829,0.0839011247893768,0,0,0.113803446464706,0.402326169295491,0.138922288373465,0.310256870570088,0.247272523425973,0.259943857149313,0.245764958256062,0,0.084605028195499,0,0.0334832964848508,0,0,0,0,0.055406237837571,0,0,0,0,0,0,0,0,0,0.0812688455295622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0338533374824575,0,0,0,0.0828894264954325,0.0812786020093627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788703512227347,0,0,0,0,0,0.0334709552899628,0.0259803338934993,0,0.0138722451656559,0.00499592897960426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0164413430605069,0.0691813633419548,0.00921171915896034,0,0,0,0,0.215426671903518,0.166976485593938,0,0.0867208318088244,0,0,0,0,0,0,0,0.0205496206861357,0,0.293133511567635,0,0,0,0.0330332397529471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00912933570498568,0,0,0.0218206052726756,0.0661577744756082,0.0246335252757512,0,0,0,0.0662835200988411,0.0650059127791652,0,0,0,0.111087966368681,0.0738741926906438,0.0368700485098145,0,0,0,0.0986287917760828,0.163625352771192,0.127090816446242,0.0614449096083165,0.15063362961962,0,0,0,0,0,0,0,0,0,0.0518548657373809,0,0,0,0,0,0,0,0,0,0,0,0,0.775848626370576,0,0.144471101234562,0.218696410009946,0.445645756056561,0.504768912765217,0.482517303662205,0.531019674287796,0.521429479776648,0.564339123727727,0.643581911102405,0.922805987029999,0.775088129698967,0.676813740045052,0,0,0,0,0,0,0,0.0641533294328646,0,0,0.283448337556827,0.331587424856164,0.460291649289648,0.485046405834616,0.513597347263193,0.371076178555103,0.321785270511603,0.399642647611183,0.437825013205426,0,0,0,0.0945084131504676,0,0,0,0.081359932135904,0,0.128189666667578,0.0486565300963951,0,0.0388749848471105,0.0269518943326477,0.0472245945615809,0,0.0387791864213161,0.0766073954291401,0,0,0,0,0,0.00947622515123899,0.0748964051866952,0.0678996586311492,0.135404897539632,0,0,0,0.0486884105045233,0.0534694707287585,0,0,0,0.0473835597909038,0.091291089277545,0.0350695482641815,0.0265562518938776,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0.0653051624661445,0,0,0,0.360069300129636,0.402364682676723,0.55324078965696,0.292670925796358,0.169860380996303,0.355510967373169,0.375582222012904,0.0340670197411913,0.0800761525331175,0,0.26366465439556,0.374524774111348,0.266885070731364,0.0354470656487682,0,0.00998500061204874,0.0644551523736777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308882351310436,0.411093422860676,0.729911149804404,0,0,0,0.0305581567893783,0,0.213207239280454,0,0,0,0,0,0,0,0,0,0.0334413538646586,0.146799018402258,0.273655832422567,0,0.0397493170902889,0,0.322458878535173,0.247021199245269,0.164596587144155,0.129160424877509,0.0729756721489083,0,0.19266946376396,0.103094123085233,0.11634867512411,0.288699787123122,0.218702986939684,0.0881462836056141,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.078470362888384,0.308724770844538,0,0,0,0,0,0,0.0479123250068257,0,0.0586534975690397,0,0.0156583438193949,0.109409152240798,0,0,0.273774759912798,0.264295134298998,0.049341225343829,0.0839011247893768,0,0,0.113803446464706,0.402326169295491,0.138922288373465,0.310256870570088,0.247272523425973,0.259943857149313,0.245764958256062,0,0.084605028195499,0,0.0334832964848508,0,0,0,0,0.055406237837571,0,0,0,0,0,0,0,0,0,0.0812688455295622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0338533374824575,0,0,0,0.0828894264954325,0.0812786020093627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788703512227347,0,0,0,0,0,0.0334709552899628,0.0259803338934993,0,0.0138722451656559,0.00499592897960426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0164413430605069,0.0691813633419548,0.00921171915896034,0,0,0,0,0.215426671903518,0.166976485593938,0,0.0867208318088244,0,0,0,0,0,0,0,0.0205496206861357,0,0.293133511567635,0,0,0,0.0330332397529471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00912933570498568,0,0,0.0218206052726756,0.0661577744756082,0.0246335252757512,0,0,0,0.0662835200988411,0.0650059127791652,0,0,0,0.111087966368681,0.0738741926906438,0.0368700485098145,0,0,0,0.0986287917760828,0.163625352771192,0.127090816446242,0.0614449096083165,0.15063362961962,0,0,0,0,0,0,0,0,0,0.0518548657373809,0,0,0,0,0,0,0,0,0,0,0,0,0.775848626370576,0,0.144471101234562,0.218696410009946,0.445645756056561,0.504768912765217,0.482517303662205,0.531019674287796,0.521429479776648,0.564339123727727,0.643581911102405,0.922805987029999,0.775088129698967,0.676813740045052,0,0,0,0,0,0,0,0.0641533294328646,0,0,0.283448337556827,0.331587424856164,0.460291649289648,0.485046405834616,0.513597347263193,0.371076178555103,0.321785270511603,0.399642647611183,0.437825013205426,0,0,0,0.0945084131504676,0,0,0,0.081359932135904,0,0.128189666667578,0.0486565300963951,0,0.0388749848471105,0.0269518943326477,0.0472245945615809,0,0.0387791864213161,0.0766073954291401,0,0,0,0,0,0.00947622515123899,0.0748964051866952,0.0678996586311492,0.135404897539632,0,0,0,0.0486884105045233,0.0534694707287585,0,0,0,0.0473835597909038,0.091291089277545,0.0350695482641815,0.0265562518938776,0,0
|gostat_on_MCL_coexpression=GO:0006929;substrate-bound cell migration;0.0223494283522351;57778!GO:0005522;profilin binding;0.0223494283522351;57778!GO:0017048;Rho GTPase binding;0.0422028640333464;57778!
|gostat_on_MCL_coexpression=GO:0006929;substrate-bound cell migration;0.0223494283522351;57778!GO:0005522;profilin binding;0.0223494283522351;57778!GO:0017048;Rho GTPase binding;0.0422028640333464;57778!
|ontology_enrichment_celltype=CL:0000791!1.87e-08!9;CL:0000789!1.87e-08!9;CL:0002420!1.87e-08!9;CL:0002419!1.87e-08!9;CL:0000790!1.87e-08!9;CL:0000838!5.98e-08!12;CL:0000624!1.62e-07!8;CL:0000084!2.97e-07!11;CL:0000827!2.97e-07!11;CL:0000542!4.87e-07!13;CL:0000051!4.87e-07!13
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.62e-13!54;UBERON:0002370!1.22e-12!23;UBERON:0000974!1.22e-12!23;UBERON:0004807!1.22e-12!23;UBERON:0005058!1.22e-12!23;UBERON:0003351!1.22e-12!23;UBERON:0009113!1.22e-12!23;UBERON:0003295!1.22e-12!23;UBERON:0009722!1.22e-12!23;UBERON:0005562!1.22e-12!23;UBERON:0007690!1.22e-12!23;UBERON:0001049!3.63e-12!52;UBERON:0005068!3.63e-12!52;UBERON:0006241!3.63e-12!52;UBERON:0007135!3.63e-12!52;UBERON:0006562!8.98e-12!24;UBERON:0003408!8.98e-12!24;UBERON:0001557!8.98e-12!24;UBERON:0001042!8.98e-12!24;UBERON:0008814!8.98e-12!24;UBERON:0009145!8.98e-12!24;UBERON:0000064!1.01e-11!99;UBERON:0004177!1.94e-11!29;UBERON:0005057!1.94e-11!29;UBERON:0002020!2.23e-10!34;UBERON:0000063!2.55e-10!35;UBERON:0000955!7.57e-10!47;UBERON:0006238!7.57e-10!47;UBERON:0001017!1.25e-09!73;UBERON:0000072!1.37e-09!27;UBERON:0002616!2.75e-09!46;UBERON:0001016!5.28e-09!75;UBERON:0000077!8.47e-09!35;UBERON:0002346!1.10e-08!64;UBERON:0003075!1.10e-08!64;UBERON:0007284!1.10e-08!64;UBERON:0002193!1.60e-08!48;UBERON:0002405!1.60e-08!48;UBERON:0003080!3.93e-08!40;UBERON:0002390!4.34e-08!45;UBERON:0003061!4.34e-08!45;UBERON:0003528!8.80e-08!29;UBERON:0002791!8.80e-08!29;UBERON:0001893!8.80e-08!29;UBERON:0002780!1.01e-07!39;UBERON:0001890!1.01e-07!39;UBERON:0006240!1.01e-07!39;UBERON:0002021!2.19e-07!10;UBERON:0000411!2.19e-07!10;UBERON:0001950!2.19e-07!10;UBERON:0010371!3.34e-07!73
}}
}}

Revision as of 16:59, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:13685980..13686007,+p6@Hivep2
Mm9::chr10:13686012..13686028,+p8@Hivep2
Mm9::chr10:13686045..13686050,+p17@Hivep2
Mm9::chr10:13686074..13686090,+p9@Hivep2
Mm9::chr11:103032160..103032175,+p7@Fmnl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006929substrate-bound cell migration0.0223494283522351
GO:0005522profilin binding0.0223494283522351
GO:0017048Rho GTPase binding0.0422028640333464



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.62e-1354
thymus1.22e-1223
neck1.22e-1223
respiratory system epithelium1.22e-1223
hemolymphoid system gland1.22e-1223
pharyngeal epithelium1.22e-1223
thymic region1.22e-1223
pharyngeal gland1.22e-1223
entire pharyngeal arch endoderm1.22e-1223
thymus primordium1.22e-1223
early pharyngeal endoderm1.22e-1223
neural tube3.63e-1252
neural rod3.63e-1252
future spinal cord3.63e-1252
neural keel3.63e-1252
pharynx8.98e-1224
gland of gut8.98e-1224
upper respiratory tract8.98e-1224
chordate pharynx8.98e-1224
pharyngeal arch system8.98e-1224
pharyngeal region of foregut8.98e-1224
organ part1.01e-1199
hemopoietic organ1.94e-1129
immune organ1.94e-1129
gray matter2.23e-1034
organ segment2.55e-1035
brain7.57e-1047
future brain7.57e-1047
central nervous system1.25e-0973
segment of respiratory tract1.37e-0927
regional part of brain2.75e-0946
nervous system5.28e-0975
mixed endoderm/mesoderm-derived structure8.47e-0935
neurectoderm1.10e-0864
neural plate1.10e-0864
presumptive neural plate1.10e-0864
hemolymphoid system1.60e-0848
immune system1.60e-0848
anterior neural tube3.93e-0840
hematopoietic system4.34e-0845
blood island4.34e-0845
brain grey matter8.80e-0829
regional part of telencephalon8.80e-0829
telencephalon8.80e-0829
regional part of forebrain1.01e-0739
forebrain1.01e-0739
future forebrain1.01e-0739
occipital lobe2.19e-0710
visual cortex2.19e-0710
neocortex2.19e-0710
ecto-epithelium3.34e-0773


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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