FFCP PHASE1:Mm9::chr10:74478053..74478077,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:74478053..74478077,+|id=chr10:74478053..74478077,+|ontology_enrichment_celltype=CL:0000117!1.96e-12!23;CL:0000337!1.96e-12!23;CL:0000540!6.92e-11!33;CL:0000047!6.92e-11!33;CL:0000031!6.92e-11!33;CL:0000404!6.92e-11!33;CL:0000393!3.10e-08!39;CL:0000211!3.10e-08!39;CL:0002319!2.17e-07!43;CL:0000221!5.80e-07!44;CL:0000133!5.80e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-18,23;CL:0000337,1.83e-18,23;CL:0000540,1.11e-11,33;CL:0000047,1.11e-11,33;CL:0000031,1.11e-11,33;CL:0000404,1.11e-11,33;CL:0000393,2.64e-09,39;CL:0000211,2.64e-09,39;CL:0002319,4.26e-08,43;CL:0000221,7.86e-08,44;CL:0000133,7.86e-08,44;CL:0002612,6.81e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.84e-27!71;UBERON:0003075!2.84e-27!71;UBERON:0007284!2.84e-27!71;UBERON:0001049!3.63e-27!52;UBERON:0005068!3.63e-27!52;UBERON:0006241!3.63e-27!52;UBERON:0007135!3.63e-27!52;UBERON:0001017!7.70e-27!73;UBERON:0005743!7.70e-27!73;UBERON:0000073!6.76e-26!75;UBERON:0001016!6.76e-26!75;UBERON:0000955!2.97e-25!50;UBERON:0006238!2.97e-25!50;UBERON:0002616!1.35e-24!49;UBERON:0000033!3.34e-24!63;UBERON:0003056!1.75e-22!49;UBERON:0004121!2.51e-21!102;UBERON:0000924!2.51e-21!102;UBERON:0006601!2.51e-21!102;UBERON:0003080!5.55e-21!40;UBERON:0002780!2.30e-20!39;UBERON:0001890!2.30e-20!39;UBERON:0006240!2.30e-20!39;UBERON:0002020!4.29e-19!34;UBERON:0002791!1.63e-15!29;UBERON:0003528!1.63e-15!29;UBERON:0001893!1.63e-15!29;UBERON:0007811!3.31e-13!86;UBERON:0000153!7.19e-13!94;UBERON:0000956!2.53e-10!21;UBERON:0001869!2.53e-10!21;UBERON:0000203!2.53e-10!21;UBERON:0002021!6.34e-09!10;UBERON:0000411!6.34e-09!10;UBERON:0001950!6.34e-09!10;UBERON:0002619!9.23e-09!17;UBERON:0000025!3.01e-08!114;UBERON:0000475!3.21e-08!200;UBERON:0004111!7.29e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.37e-41,54;UBERON:0001049,2.37e-38,52;UBERON:0005068,2.37e-38,52;UBERON:0006241,2.37e-38,52;UBERON:0007135,2.37e-38,52;UBERON:0001017,1.12e-36,73;UBERON:0001016,1.86e-35,75;UBERON:0002346,6.24e-34,64;UBERON:0003075,6.24e-34,64;UBERON:0007284,6.24e-34,64;UBERON:0002020,1.78e-33,34;UBERON:0000955,1.10e-29,47;UBERON:0006238,1.10e-29,47;UBERON:0004121,1.43e-29,95;UBERON:0000924,1.43e-29,95;UBERON:0006601,1.43e-29,95;UBERON:0003080,9.26e-29,40;UBERON:0010371,1.09e-28,73;UBERON:0002616,2.94e-28,46;UBERON:0002780,2.46e-27,39;UBERON:0001890,2.46e-27,39;UBERON:0006240,2.46e-27,39;UBERON:0003056,1.95e-26,49;UBERON:0003528,8.81e-25,29;UBERON:0002791,8.81e-25,29;UBERON:0001893,8.81e-25,29;UBERON:0002021,4.31e-21,10;UBERON:0000411,4.31e-21,10;UBERON:0001950,4.31e-21,10;UBERON:0010314,5.47e-21,92;UBERON:0000025,3.03e-15,114;UBERON:0002420,6.96e-15,8;UBERON:0007245,6.96e-15,8;UBERON:0010009,6.96e-15,8;UBERON:0010011,6.96e-15,8;UBERON:0000454,6.96e-15,8;UBERON:0002619,1.02e-13,17;UBERON:0004111,1.10e-13,122;UBERON:0000956,1.01e-12,21;UBERON:0001869,1.01e-12,21;UBERON:0000203,1.01e-12,21;UBERON:0002240,2.84e-12,6;UBERON:0005174,2.84e-12,6;UBERON:0001137,2.84e-12,6;UBERON:0000369,1.49e-10,5;UBERON:0002435,1.49e-10,5;UBERON:0000204,1.49e-10,5;UBERON:0010082,1.49e-10,5;UBERON:0001948,1.79e-10,5;UBERON:0002315,1.79e-10,5;UBERON:0011216,1.12e-09,194;UBERON:0003076,1.41e-09,12;UBERON:0003057,1.41e-09,12;UBERON:0000483,1.49e-08,174;UBERON:0000119,2.34e-08,176;UBERON:0002950,2.21e-07,4;UBERON:0001891,2.21e-07,4;UBERON:0009616,2.21e-07,4;UBERON:0010286,2.21e-07,4;UBERON:0002257,6.81e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0,0,0,0,0,0,0,0.515672092277442,1.82084814773638,2.64495489636016,0,0,0,0,0,0,0,0.384218305321555,0.622137673850866,0.405017814995072,0.420649922702764,3.71346279724945,1.54607978666129,0.489963196859816,0.479227355091182,0.919218786610021,1.10115880999389,1.53224805702225,1.99688493233117,1.18697658957174,2.47016637726506,2.08365348222704,1.11673199600552,1.12552522006336,1.68078072554491,4.12480019663135,1.56608848879013,1.67759501242771,0.075726193333184,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0.304465478312141,0,0.301445281105245,0.23517741427141,0.251333182659351,0,0,0,0.323533699894818,0.883366073841574,0,0,0.878342391034642,0.83778682725382,0.255457055208591,0,0,0,1.19832511523858,3.20250421973039,3.5183218591602,2.43354048269187,2.55715457330331,1.45451631191692,1.46017136760982,0.203678727700633,0.622034853050465,0.505445516867349,0.420883711772948,0.390361328888111,0,0.180062129805349,0.30140963567143,0.340182495756639,1.15302348256365,0.468508622798644,3.88055056108524,0.215567992932842,0.189106080167819,0,0,0.278047249225598,0.348252166522167,0.411564272815887,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0.841159794256509,1.54356918568927,0,0,0.213288250535234,0,0,0,0,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:74478053..74478077,+ | |||
|id=chr10:74478053..74478077,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.96e-12!23;CL:0000337!1.96e-12!23;CL:0000540!6.92e-11!33;CL:0000047!6.92e-11!33;CL:0000031!6.92e-11!33;CL:0000404!6.92e-11!33;CL:0000393!3.10e-08!39;CL:0000211!3.10e-08!39;CL:0002319!2.17e-07!43;CL:0000221!5.80e-07!44;CL:0000133!5.80e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-18,23;CL:0000337,1.83e-18,23;CL:0000540,1.11e-11,33;CL:0000047,1.11e-11,33;CL:0000031,1.11e-11,33;CL:0000404,1.11e-11,33;CL:0000393,2.64e-09,39;CL:0000211,2.64e-09,39;CL:0002319,4.26e-08,43;CL:0000221,7.86e-08,44;CL:0000133,7.86e-08,44;CL:0002612,6.81e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.84e-27!71;UBERON:0003075!2.84e-27!71;UBERON:0007284!2.84e-27!71;UBERON:0001049!3.63e-27!52;UBERON:0005068!3.63e-27!52;UBERON:0006241!3.63e-27!52;UBERON:0007135!3.63e-27!52;UBERON:0001017!7.70e-27!73;UBERON:0005743!7.70e-27!73;UBERON:0000073!6.76e-26!75;UBERON:0001016!6.76e-26!75;UBERON:0000955!2.97e-25!50;UBERON:0006238!2.97e-25!50;UBERON:0002616!1.35e-24!49;UBERON:0000033!3.34e-24!63;UBERON:0003056!1.75e-22!49;UBERON:0004121!2.51e-21!102;UBERON:0000924!2.51e-21!102;UBERON:0006601!2.51e-21!102;UBERON:0003080!5.55e-21!40;UBERON:0002780!2.30e-20!39;UBERON:0001890!2.30e-20!39;UBERON:0006240!2.30e-20!39;UBERON:0002020!4.29e-19!34;UBERON:0002791!1.63e-15!29;UBERON:0003528!1.63e-15!29;UBERON:0001893!1.63e-15!29;UBERON:0007811!3.31e-13!86;UBERON:0000153!7.19e-13!94;UBERON:0000956!2.53e-10!21;UBERON:0001869!2.53e-10!21;UBERON:0000203!2.53e-10!21;UBERON:0002021!6.34e-09!10;UBERON:0000411!6.34e-09!10;UBERON:0001950!6.34e-09!10;UBERON:0002619!9.23e-09!17;UBERON:0000025!3.01e-08!114;UBERON:0000475!3.21e-08!200;UBERON:0004111!7.29e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.37e-41,54;UBERON:0001049,2.37e-38,52;UBERON:0005068,2.37e-38,52;UBERON:0006241,2.37e-38,52;UBERON:0007135,2.37e-38,52;UBERON:0001017,1.12e-36,73;UBERON:0001016,1.86e-35,75;UBERON:0002346,6.24e-34,64;UBERON:0003075,6.24e-34,64;UBERON:0007284,6.24e-34,64;UBERON:0002020,1.78e-33,34;UBERON:0000955,1.10e-29,47;UBERON:0006238,1.10e-29,47;UBERON:0004121,1.43e-29,95;UBERON:0000924,1.43e-29,95;UBERON:0006601,1.43e-29,95;UBERON:0003080,9.26e-29,40;UBERON:0010371,1.09e-28,73;UBERON:0002616,2.94e-28,46;UBERON:0002780,2.46e-27,39;UBERON:0001890,2.46e-27,39;UBERON:0006240,2.46e-27,39;UBERON:0003056,1.95e-26,49;UBERON:0003528,8.81e-25,29;UBERON:0002791,8.81e-25,29;UBERON:0001893,8.81e-25,29;UBERON:0002021,4.31e-21,10;UBERON:0000411,4.31e-21,10;UBERON:0001950,4.31e-21,10;UBERON:0010314,5.47e-21,92;UBERON:0000025,3.03e-15,114;UBERON:0002420,6.96e-15,8;UBERON:0007245,6.96e-15,8;UBERON:0010009,6.96e-15,8;UBERON:0010011,6.96e-15,8;UBERON:0000454,6.96e-15,8;UBERON:0002619,1.02e-13,17;UBERON:0004111,1.10e-13,122;UBERON:0000956,1.01e-12,21;UBERON:0001869,1.01e-12,21;UBERON:0000203,1.01e-12,21;UBERON:0002240,2.84e-12,6;UBERON:0005174,2.84e-12,6;UBERON:0001137,2.84e-12,6;UBERON:0000369,1.49e-10,5;UBERON:0002435,1.49e-10,5;UBERON:0000204,1.49e-10,5;UBERON:0010082,1.49e-10,5;UBERON:0001948,1.79e-10,5;UBERON:0002315,1.79e-10,5;UBERON:0011216,1.12e-09,194;UBERON:0003076,1.41e-09,12;UBERON:0003057,1.41e-09,12;UBERON:0000483,1.49e-08,174;UBERON:0000119,2.34e-08,176;UBERON:0002950,2.21e-07,4;UBERON:0001891,2.21e-07,4;UBERON:0009616,2.21e-07,4;UBERON:0010286,2.21e-07,4;UBERON:0002257,6.81e-07,3 | |||
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|short_description=p@chr10:74478053..74478077,+ | |||
}} |
Revision as of 17:20, 12 September 2013
Short description: | p@chr10:74478053..74478077, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:74478053..74478077, + |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.83e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.83e-18 | 23 |
neuron | 1.11e-11 | 33 |
neuronal stem cell | 1.11e-11 | 33 |
neuroblast | 1.11e-11 | 33 |
electrically signaling cell | 1.11e-11 | 33 |
electrically responsive cell | 2.64e-09 | 39 |
electrically active cell | 2.64e-09 | 39 |
neural cell | 4.26e-08 | 43 |
ectodermal cell | 7.86e-08 | 44 |
neurectodermal cell | 7.86e-08 | 44 |
neuron of the ventral spinal cord | 6.81e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.