FF:10151-102I7: Difference between revisions

Latest revision as of 12:22, 3 June 2020

Name:	amygdala, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12311
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amygdala
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005342

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12311		CAGE		DRX008618		DRR009490

Accession ID Hg19

Library id		BAM		CTSS
CNhs12311		DRZ000915		DRZ002300

Accession ID Hg38

Library id		BAM		CTSS
CNhs12311		DRZ012265		DRZ013650

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10024		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.406
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.857
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.308
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0572
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.194
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.493
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0686
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.153
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0572
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.153
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.266
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.153
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0572
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.818
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.108
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.153
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0762
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0572
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.746
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.265
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.194
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.108
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0572
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.493
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0377
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.355
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0877
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0702
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.565
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0572
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.597
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.452
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0572
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.562
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.762
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0572
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.153
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.327
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.108
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.627
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.612
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.173
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.452
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.106
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.53
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0572
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12311

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0143
MA0003.1	MA0003.1	0.226
MA0004.1	MA0004.1	0.372
MA0006.1	MA0006.1	0.279
MA0007.1	MA0007.1	0.335
MA0009.1	MA0009.1	0.0958
MA0014.1	MA0014.1	0.658
MA0017.1	MA0017.1	0.00116
MA0018.2	MA0018.2	0.538
MA0019.1	MA0019.1	0.589
MA0024.1	MA0024.1	0.99
MA0025.1	MA0025.1	0.826
MA0027.1	MA0027.1	0.404
MA0028.1	MA0028.1	0.0663
MA0029.1	MA0029.1	0.0276
MA0030.1	MA0030.1	0.631
MA0031.1	MA0031.1	0.824
MA0035.2	MA0035.2	0.00405
MA0038.1	MA0038.1	0.385
MA0039.2	MA0039.2	0.189
MA0040.1	MA0040.1	0.677
MA0041.1	MA0041.1	0.446
MA0042.1	MA0042.1	0.919
MA0043.1	MA0043.1	0.974
MA0046.1	MA0046.1	0.00182
MA0047.2	MA0047.2	0.0371
MA0048.1	MA0048.1	0.188
MA0050.1	MA0050.1	0.0613
MA0051.1	MA0051.1	0.163
MA0052.1	MA0052.1	0.906
MA0055.1	MA0055.1	0.00313
MA0057.1	MA0057.1	0.815
MA0058.1	MA0058.1	0.295
MA0059.1	MA0059.1	0.068
MA0060.1	MA0060.1	0.698
MA0061.1	MA0061.1	0.00825
MA0062.2	MA0062.2	0.00351
MA0065.2	MA0065.2	2.42865e-4
MA0066.1	MA0066.1	0.00912
MA0067.1	MA0067.1	0.934
MA0068.1	MA0068.1	0.669
MA0069.1	MA0069.1	0.396
MA0070.1	MA0070.1	0.786
MA0071.1	MA0071.1	0.0148
MA0072.1	MA0072.1	0.261
MA0073.1	MA0073.1	0.407
MA0074.1	MA0074.1	0.211
MA0076.1	MA0076.1	0.12
MA0077.1	MA0077.1	0.198
MA0078.1	MA0078.1	0.749
MA0079.2	MA0079.2	0.612
MA0080.2	MA0080.2	3.23671e-8
MA0081.1	MA0081.1	0.04
MA0083.1	MA0083.1	0.0183
MA0084.1	MA0084.1	0.873
MA0087.1	MA0087.1	0.744
MA0088.1	MA0088.1	0.193
MA0090.1	MA0090.1	0.371
MA0091.1	MA0091.1	0.598
MA0092.1	MA0092.1	0.274
MA0093.1	MA0093.1	0.375
MA0099.2	MA0099.2	3.22385e-18
MA0100.1	MA0100.1	0.556
MA0101.1	MA0101.1	0.0043
MA0102.2	MA0102.2	0.203
MA0103.1	MA0103.1	0.175
MA0104.2	MA0104.2	0.434
MA0105.1	MA0105.1	8.58906e-4
MA0106.1	MA0106.1	0.0243
MA0107.1	MA0107.1	0.00552
MA0108.2	MA0108.2	0.327
MA0111.1	MA0111.1	0.483
MA0112.2	MA0112.2	6.33143e-4
MA0113.1	MA0113.1	0.49
MA0114.1	MA0114.1	0.00187
MA0115.1	MA0115.1	0.316
MA0116.1	MA0116.1	0.00696
MA0117.1	MA0117.1	0.844
MA0119.1	MA0119.1	0.114
MA0122.1	MA0122.1	0.618
MA0124.1	MA0124.1	0.672
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.992
MA0135.1	MA0135.1	0.0506
MA0136.1	MA0136.1	1.26195e-11
MA0137.2	MA0137.2	0.656
MA0138.2	MA0138.2	0.519
MA0139.1	MA0139.1	0.368
MA0140.1	MA0140.1	4.90543e-4
MA0141.1	MA0141.1	0.00186
MA0142.1	MA0142.1	0.994
MA0143.1	MA0143.1	0.547
MA0144.1	MA0144.1	0.301
MA0145.1	MA0145.1	0.166
MA0146.1	MA0146.1	0.0169
MA0147.1	MA0147.1	0.301
MA0148.1	MA0148.1	0.0357
MA0149.1	MA0149.1	0.0193
MA0150.1	MA0150.1	1.88282e-4
MA0152.1	MA0152.1	0.51
MA0153.1	MA0153.1	0.0796
MA0154.1	MA0154.1	0.0401
MA0155.1	MA0155.1	0.553
MA0156.1	MA0156.1	1.04266e-7
MA0157.1	MA0157.1	0.486
MA0159.1	MA0159.1	0.00421
MA0160.1	MA0160.1	0.00742
MA0162.1	MA0162.1	0.102
MA0163.1	MA0163.1	9.13749e-6
MA0164.1	MA0164.1	0.708
MA0258.1	MA0258.1	0.00847
MA0259.1	MA0259.1	0.75

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12311

Novel motif	Logo	P-value
1	1	0.048
10	10	0.049
100	100	0.374
101	101	0.378
102	102	0.9
103	103	0.0703
104	104	0.151
105	105	0.207
106	106	0.0436
107	107	0.111
108	108	0.993
109	109	0.00174
11	11	0.013
110	110	0.0577
111	111	0.16
112	112	0.275
113	113	0.571
114	114	0.106
115	115	0.966
116	116	0.205
117	117	0.0122
118	118	0.147
119	119	0.164
12	12	0.633
120	120	0.204
121	121	0.194
122	122	0.834
123	123	0.747
124	124	0.334
125	125	0.242
126	126	0.0335
127	127	0.435
128	128	0.187
129	129	0.386
13	13	0.00218
130	130	0.307
131	131	0.0492
132	132	0.648
133	133	0.0678
134	134	0.407
135	135	0.325
136	136	0.00345
137	137	0.774
138	138	0.908
139	139	0.101
14	14	0.925
140	140	0.837
141	141	0.437
142	142	0.794
143	143	0.0375
144	144	0.898
145	145	0.172
146	146	0.495
147	147	0.94
148	148	0.23
149	149	0.201
15	15	0.0707
150	150	0.16
151	151	0.577
152	152	0.0874
153	153	0.99
154	154	0.489
155	155	0.582
156	156	0.313
157	157	0.459
158	158	0.513
159	159	0.0389
16	16	0.0496
160	160	0.223
161	161	0.159
162	162	0.793
163	163	0.796
164	164	0.0425
165	165	0.035
166	166	0.81
167	167	0.663
168	168	0.398
169	169	0.00987
17	17	0.125
18	18	0.112
19	19	0.201
2	2	0.8
20	20	0.202
21	21	0.0781
22	22	0.202
23	23	0.351
24	24	0.0392
25	25	0.49
26	26	7.77333e-4
27	27	0.673
28	28	0.684
29	29	0.00827
3	3	0.0482
30	30	0.936
31	31	0.806
32	32	0.0348
33	33	0.0517
34	34	0.654
35	35	0.58
36	36	0.131
37	37	0.0339
38	38	0.302
39	39	0.273
4	4	0.636
40	40	0.0252
41	41	0.263
42	42	0.215
43	43	0.119
44	44	0.155
45	45	0.651
46	46	0.078
47	47	0.0549
48	48	0.0462
49	49	0.201
5	5	0.483
50	50	0.371
51	51	0.384
52	52	0.511
53	53	0.803
54	54	0.386
55	55	0.566
56	56	0.468
57	57	0.374
58	58	0.283
59	59	0.0668
6	6	0.957
60	60	0.0653
61	61	0.0906
62	62	0.168
63	63	0.2
64	64	0.187
65	65	0.227
66	66	0.127
67	67	0.276
68	68	0.127
69	69	0.479
7	7	0.0527
70	70	0.0463
71	71	0.0101
72	72	0.347
73	73	0.0295
74	74	0.685
75	75	0.0315
76	76	0.42
77	77	0.166
78	78	0.00163
79	79	0.26
8	8	0.0762
80	80	0.383
81	81	0.638
82	82	0.588
83	83	0.0321
84	84	0.68
85	85	0.256
86	86	0.2
87	87	2.35461e-4
88	88	0.825
89	89	0.361
9	9	0.362
90	90	0.0733
91	91	0.698
92	92	0.583
93	93	0.883
94	94	0.192
95	95	0.0105
96	96	0.972
97	97	0.757
98	98	0.257
99	99	0.475

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12311

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010151 human amygdala - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008510
+|DRA_sample_Accession=CAGE@SAMD00005342
-|accession_numbers=CAGE;DRX008618;DRR009490;DRZ000915;DRZ002300
+|HumanCAGEScanFiles=NCig10024;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008618;DRR009490;DRZ000915;DRZ002300;DRZ012265;DRZ013650
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.54!344.78!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.41!254.33!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.81!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.11!129.28!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.10!124.07!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.84!68.79!OLIG2;;chr14:29235961..29236008,+!p1@FOXG1!1.82!65.55!FOXG1;;chr19:46801639..46801699,+!p1@HIF3A!1.77!57.25!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.75!112.68!C11orf9;;chr17:53342311..53342400,+!p1@HLF!1.74!61.05!HLF;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.60!HOPX;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.32!ZNF483;;chr12:54779511..54779577,-!p5@ZNF385A!1.71!50.36!ZNF385A;;chr15:80733570..80733659,+!p2@ARNT2!1.71!49.80!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.80!NEUROD2;;chr12:26277817..26277863,-!p2@BHLHE41!1.70!66.26!BHLHE41;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.43!PRDM8;;chr2:95963052..95963106,+!p1@KCNIP3!1.68!47.41!KCNIP3;;chr21:34442540..34442560,+!p2@OLIG1!1.67!45.44!OLIG1;;chr12:106976678..106976708,+!p2@RFX4!1.66!44.45!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!73.15!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.64!42.90!SOX8;;chr9:77112244..77112262,+!p1@RORB!1.62!45.72!RORB;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.65!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.61!39.67!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.60!39.11!TBR1;;chr19:46800289..46800327,+!p2@HIF3A!1.57!36.57!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.56!46.14!ARNT2;;chr9:126774018..126774055,+!p1@LHX2!1.56!35.45!LHX2;;chr10:64134120..64134183,+!p1@ZNF365!1.54!40.09!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.78!NPAS3;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.07!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.52!32.07!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.52!31.79!SMARCE1;;chr6:19837592..19837621,+!p1@ID4!1.50!179.92!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.50!105.36!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.49!30.10!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.78!ZBTB16;;chr10:119302232..119302265,+!p1@EMX2!1.48!29.40!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.13!NKX6-2;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.39!CSRNP3;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.29!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.15!IRF8;;chr11:31832862..31832884,-!p2@PAX6!1.42!25.60!PAX6;;chr1:2461692..2461710,-!p1@HES5!1.42!25.04!HES5;;chr8:65492915..65492932,+!p1@BHLHE22!1.41!24.90!BHLHE22;;chr10:48355030..48355090,+!p1@ZNF488!1.39!29.96!ZNF488;;chr11:8102846..8102892,+!p1@TUB!1.38!32.07!TUB;;chr11:47400078..47400106,-!p1@SPI1!1.38!23.21!SPI1;;chr12:106976774..106976788,+!p1@RFX4!1.38!22.93!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.37!53.31!NFIA;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.84!SOX15;;chr17:38219209..38219230,+!p1@THRA!1.36!272.48!THRA;;chr17:70117153..70117174,+!p1@SOX9!1.36!219.73!SOX9;;chr15:80735246..80735321,+!p3@ARNT2!1.36!21.80!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.35!21.24!TEF;;chr14:29234581..29234601,+!p2@FOXG1!1.34!21.10!FOXG1;;chr6:143266185..143266238,-!p2@HIVEP2!1.32!27.15!HIVEP2;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.76!KLF15;;chr5:92920256..92920282,+!p7@NR2F1!1.29!22.37!NR2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!137.72!MEF2C;;chr8:53322347..53322378,-!p2@ST18!1.27!17.72!ST18;;chr14:33403648..33403710,+!p3@NPAS3!1.27!17.72!NPAS3;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.54!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.23!16.18!ZBED1;;chr12:24102576..24102623,-!p2@SOX5!1.23!15.90!SOX5;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.80!PROX1;;chr1:244219775..244219893,+!p2@ZNF238!1.21!20.96!ZNF238;;chr8:30890810..30890880,-!p1@PURG!1.21!15.33!PURG;;chr8:40755333..40755352,-!p1@ZMAT4!1.21!15.33!ZMAT4;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.77!DACH2;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.63!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.18!55.71!MAF;;chr16:51185318..51185348,-!p2@SALL1!1.18!14.21!SALL1;;chr9:126773880..126773895,+!p2@LHX2!1.18!14.21!LHX2;;chr14:58798013..58798071,+!p2@ARID4A!1.18!14.21!ARID4A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.93!POU3F3;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.76!RFX3;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.52!NFIX;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.83!ZBTB16;;chr9:126774058..126774081,+!p3@LHX2!1.12!12.24!LHX2;;chr19:57352109..57352153,-!p2@ZIM2!1.12!12.10!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.96!ZNF727;;chr2:42721205..42721307,+!p4@MTA3!1.11!11.82!MTA3;;chr2:95963120..95963136,+!p2@KCNIP3!1.10!11.68!KCNIP3;;chr14:22005197..22005261,-!p3@SALL2!1.10!11.53!SALL2;;chr6:108487289..108487302,+!p1@NR2E1!1.10!11.53!NR2E1;;chr12:26277929..26277955,-!p3@BHLHE41!1.09!16.32!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.09!11.39!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.39!KLF13;;chr19:13135582..13135600,+!p3@NFIX!1.09!11.25!NFIX;;chr2:2328299..2328363,-!p3@MYT1L!1.09!11.25!MYT1L;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.25!PKNOX2;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.46!ZNF540;;chr21:39870339..39870443,-!p1@ERG!1.08!10.97!ERG;;chr12:103351444..103351461,+!p1@ASCL1!1.07!10.83!ASCL1;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.83!NEUROD1;;chr17:38219184..38219195,+!p3@THRA!1.06!20.96!THRA;;chr3:24536253..24536328,-!p1@THRB!1.06!20.12!THRB;;chr14:33408072..33408114,+!p2@NPAS3!1.06!12.38!NPAS3;;chr8:106330656..106330684,+!p1@ZFPM2!1.05!26.87!ZFPM2;;chr16:79634595..79634620,-!p2@MAF!1.05!18.99!MAF;;chr5:71803177..71803255,-!p1@ZNF366!1.05!10.27!ZNF366;;chr7:31380292..31380351,-!p1@NEUROD6!1.05!10.13!NEUROD6;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.63!TCF4;;chr12:24715376..24715432,-!p1@SOX5!1.04!12.80!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.85!ZBTB16;;chr11:31832807..31832823,-!p4@PAX6!1.04!9.85!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.85!OLIG1;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.50!KLF15;;chr1:151032860..151032918,+!p1@MLLT11!1.02!115.07!MLLT11;;chr7:150974206..150974255,-!p1@SMARCD3!1.02!60.63!SMARCD3;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.37!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.02!9.57!POU2F1;;chr7:115670804..115670825,-!p1@TFEC!1.02!9.42!TFEC;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.42!HSF4;;chr12:54785074..54785122,-!p2@ZNF385A!1.01!14.35!ZNF385A;;chr12:125003087..125003141,-!p4@NCOR2!1.01!11.96!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.25!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.28!ARNT2;;chr17:38219143..38219154,+!p2@THRA!1.00!32.64!THRA;;chr9:3525910..3525955,-!p4@RFX3!1.00!27.71!RFX3;;chr1:61924375..61924380,+!p6@NFIA!1.00!12.66!NFIA;;chr19:57183114..57183145,-!p1@ZNF835!1.00!10.13!ZNF835;;chr1:40105299..40105326,-!p1@HEYL!1.00!9.00!HEYL;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.71!BCL6;;chr3:114173720..114173794,-!p6@ZBTB20!0.99!8.86!ZBTB20;;chr12:106976656..106976672,+!p4@RFX4!0.99!8.86!RFX4;;chr1:8585945..8586056,-!p3@RERE!0.98!29.54!RERE;;chr8:106330696..106330719,+!p2@ZFPM2!0.98!10.97!ZFPM2;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.99!HEY2;;chr7:73038839..73038862,-!p1@MLXIPL!0.98!8.58!MLXIPL;;chr8:93074803..93074845,-!p1@RUNX1T1!0.98!8.58!RUNX1T1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.58!HSF4;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.58!OTX1;;chr2:68592406..68592424,+!p1@PLEK!0.98!8.58!PLEK;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.19!ZNF454;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.44!NFIB;;chr14:29234870..29234930,+!p7@FOXG1!0.97!8.44!FOXG1;;chr12:103352277..103352324,+!p2@ASCL1!0.97!8.30!ASCL1;;chr3:181429641..181429650,+!p3@SOX2!0.97!8.30!SOX2;;chr5:88081308..88081333,-!p8@MEF2C!0.97!8.30!MEF2C;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.30!TCF4;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.30!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.16!SALL1;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.16!HSF4;;chr13:100623375..100623425,-!p1@ZIC5!0.96!8.16!ZIC5;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.96!RFX3;;chr7:64023410..64023428,-!p2@ZNF680!0.95!12.80!ZNF680;;chr10:38265517..38265591,-!p1@ZNF25!0.94!30.81!ZNF25;;chr14:73360799..73360817,-!p1@DPF3!0.94!27.85!DPF3;;chr11:31839488..31839515,-!p3@PAX6!0.94!7.74!PAX6;;chr13:95364784..95364806,-!p1@SOX21!0.94!7.74!SOX21;;chr17:17726907..17726958,-!p2@SREBF1!0.93!48.81!SREBF1;;chr20:3388541..3388575,-!p2@C20orf194!0.93!30.38!C20orf194;;chr19:53636125..53636178,-!p1@ZNF415!0.93!21.94!ZNF415;;chr2:2335109..2335134,-!p2@MYT1L!0.93!7.60!MYT1L;;chr8:65493017..65493035,+!p4@BHLHE22!0.93!7.46!BHLHE22;;chr14:21994337..21994442,-!p1@SALL2!0.92!21.10!SALL2;;chr2:113057415..113057477,+!p3@ZC3H6!0.92!9.57!ZC3H6;;chr2:73520667..73520683,-!p1@EGR4!0.92!7.31!EGR4;;chr15:31618903..31618962,+!p3@KLF13!0.91!20.40!KLF13;;chr8:80679993..80680011,-!p1@HEY1!0.91!10.41!HEY1;;chr15:80696836..80696853,+!p7@ARNT2!0.91!7.17!ARNT2;;chr16:67198683..67198698,+!p2@HSF4!0.91!7.17!HSF4;;chr9:77112225..77112238,+!p2@RORB!0.91!7.17!RORB;;chr17:38256822..38256851,-!p1@NR1D1!0.90!57.67!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!0.90!28.84!MEF2C;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.96!TCF12;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.69!ZNF471;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr1:2985760..2985774,+!p1@PRDM16!0.90!7.03!PRDM16;;chr8:22550530..22550609,-!p2@EGR3!0.90!7.03!EGR3;;chr13:100634031..100634045,+!p1@ZIC2!0.90!7.03!ZIC2;;chrX:82763292..82763317,+!p1@POU3F4!0.90!7.03!POU3F4;;chr1:244214577..244214593,+!p1@ZNF238!0.90!6.89!ZNF238;;chr17:4890919..4890985,-!p1@CAMTA2!0.89!67.24!CAMTA2;;chr13:45151434..45151507,-!p3@TSC22D1!0.89!39.25!TSC22D1;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.65!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.89!20.40!NFIA;;chrX:70315688..70315709,+!p1@FOXO4!0.89!16.32!FOXO4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.89!10.41!ZNF853;;chr20:50159198..50159299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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10151-102I7
 |is_a=EFO:0002091;;FF:0000002;;FF:0010151
 |is_obsolete=
 |library_id=CNhs12311
-|library_id_phase_based=1:CNhs12311
+|library_id_phase_based=2:CNhs12311
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10151
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10151
 |name=amygdala, adult, donor10252
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=NCig10024,,,
 |profile_hcage=CNhs12311,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 102: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10151-102I7;search_select_hide=table117:FF:10151-102I7
 }}

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FF:10151-102I7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:22, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0