FF:11513-119H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005939 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005939 | ||
|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186;DRZ012151;DRZ013536 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037211;DRR041577;DRZ007219 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000184 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.21!159.74!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.88!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.15!FOXF1;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.73!NFIX;;chr6:1389789..1389821,+!p1@FOXF2!1.39!32.41!FOXF2;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.18!CREB3L1;;chr17:46671108..46671147,-!p1@HOXB5!1.29!18.52!HOXB5;;chr6:34204921..34204939,+!p3@HMGA1!1.28!532.47!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.28!17.94!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.27!78.71!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.57!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.18!38.20!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!1.18!24.31!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.67!SIX1;;chr2:239756671..239756732,+!p1@TWIST2!1.17!43.99!TWIST2;;chr11:47279504..47279563,+!p1@NR1H3!1.14!28.94!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!1.13!56.14!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.26!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!28.94!HMGA2;;chr17:46675420..46675465,-!p3@HOXB6!1.06!12.15!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.04!12.73!DRAP1;;chr17:46655704..46655718,-!p2@HOXB4!1.03!14.47!HOXB4;;chr6:1389989..1390019,+!p2@FOXF2!1.03!9.84!FOXF2;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.13!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!61.93!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!1.01!48.04!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!1.01!13.31!NR2F2;;chr7:27183263..27183284,-!p2@HOXA5!1.01!9.26!HOXA5;;chr12:66218904..66218913,+!p11@HMGA2!1.01!9.26!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.68!CREB3L1;;chr8:25902876..25902936,-!p1@EBF2!0.99!8.68!EBF2;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.00!PRRX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.97!9.26!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.96!38.20!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.57!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.57!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.68!TWIST1;;chr19:13135582..13135600,+!p3@NFIX!0.93!7.52!NFIX;;chr20:42543441..42543497,+!p1@TOX2!0.90!32.41!TOX2;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.68!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!0.90!9.26!BCL3;;chr14:29235961..29236008,+!p1@FOXG1!0.90!6.95!FOXG1;;chr17:59477275..59477286,+!p3@TBX2!0.89!9.26!TBX2;;chr19:13134457..13134462,+!p5@NFIX!0.88!12.15!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.42!ZFP64;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.37!HMGA2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.37!PRRX2;;chr2:85981222..85981259,+!p2@ATOH8!0.85!10.42!ATOH8;;chr1:170632285..170632309,+!p1@PRRX1!0.85!6.95!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.84!11.00!ZFP106;;chr17:1959369..1959388,+!p2@HIC1!0.83!16.21!HIC1;;chr1:170633348..170633399,+!p2@PRRX1!0.83!8.10!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.82!680.06!HMGA1;;chr20:39946361..39946379,-!p2@ZHX3!0.81!17.36!ZHX3;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.31!DRAP1;;chr19:45261550..45261641,+!p6@BCL3!0.80!9.26!BCL3;;chr15:96874145..96874166,+!p7@NR2F2!0.79!10.42!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.79!5.21!HOXB4;;chr4:174451370..174451387,-!p1@HAND2!0.79!5.21!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.78!35.31!HIC1;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.68!FOXC1;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.79!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.78!5.79!SIX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.77!5.21!GLIS1;;chr8:128748308..128748324,+!p2@MYC!0.76!144.69!MYC;;chr1:8926441..8926473,-!p10@ENO1!0.76!7.52!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.75!119.81!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.75!20.84!STAT6;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.42!SOX15;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.79!NFE2;;chr14:29236269..29236285,+!p3@FOXG1!0.75!4.63!FOXG1;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.63!HOXA2;;chr17:46675558..46675577,-!p2@HOXB6!0.75!4.63!HOXB6;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.63!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.63!KDM5D;;chr15:96873984..96873999,+!p3@NR2F2!0.74!36.46!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.74!13.89!PCBP4;;chr3:12329397..12329433,+!p2@PPARG!0.74!11.00!PPARG;;chr10:77161133..77161176,-!p3@ZNF503!0.74!10.42!ZNF503;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.10!TBX2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.09!TBX3;;chr6:1312325..1312340,+!p1@FOXQ1!0.73!7.52!FOXQ1;;chr20:42543506..42543549,+!p2@TOX2!0.72!11.00!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.84!FOXD1;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.00!PPARG;;chr15:96874244..96874259,+!p5@NR2F2!0.71!11.00!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.71!5.79!HOXB2;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.79!EBF1;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.18!SNAI2;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.05!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.70!4.05!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!0.70!4.05!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.70!4.05!HOXA5;;chr12:114845810..114845824,-!p1@TBX5!0.70!4.05!TBX5;;chr2:46524537..46524553,+!p1@EPAS1!0.69!436.98!EPAS1;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.52!PCBP4;;chr16:86600426..86600441,+!p1@FOXC2!0.68!10.42!FOXC2;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.79!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.68!5.21!NFIX;;chr3:52001448..52001478,-!p2@PCBP4!0.67!59.61!PCBP4;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.15!DRAP1;;chr17:61919985..61920012,-!p3@SMARCD2!0.67!9.84!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.67!4.63!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.05!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.66!37.62!NR2F2;;chr17:61919812..61919833,-!p6@SMARCD2!0.66!4.63!SMARCD2;;chr20:39317868..39317884,-!p1@MAFB!0.65!48.04!MAFB;;chr12:53614115..53614154,-!p1@RARG!0.65!21.41!RARG;;chr1:170632250..170632277,+!p7@PRRX1!0.65!3.47!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.47!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.65!3.47!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!0.65!3.47!SOX11;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.25!HMGA1;;chr14:21994337..21994442,-!p1@SALL2!0.64!10.42!SALL2;;chr1:221053049..221053075,+!p3@HLX!0.64!6.37!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.64!5.21!HOXB7;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.41!CREB3;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.47!FOSL1;;chr18:3451646..3451691,+!p3@TGIF1!0.63!9.84!TGIF1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.37!ZNF454;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.63!4.05!DRAP1;;chr5:92919068..92919082,+!p5@NR2F1!0.63!4.05!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!0.62!491.38!CEBPD;;chr19:18392236..18392248,-!p2@JUND!0.62!24.89!JUND;;chr12:54447599..54447630,+!p3@HOXC4!0.62!4.05!HOXC4;;chr21:47063625..47063658,+!p1@PCBP3!0.61!15.63!PCBP3;;chr3:126076242..126076257,-!p1@KLF15!0.61!4.05!KLF15;;chr17:3571863..3571881,-!p1@TAX1BP3!0.60!259.29!TAX1BP3;;chr17:46126136..46126152,+!p1@NFE2L1!0.60!186.37!NFE2L1;;chr19:44037546..44037594,+!p1@ZNF575!0.60!6.95!ZNF575;;chr19:42788611..42788634,+!p2@CIC!0.60!5.21!CIC;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.79!NR2F2;;chr11:113930291..113930339,+!p2@ZBTB16!0.59!5.21!ZBTB16;;chr2:85980951..85981004,+!p1@ATOH8!0.59!5.21!ATOH8;;chr3:12330560..12330579,+!p1@PPARG!0.59!3.47!PPARG;;chr4:174450089..174450153,-!p2@HAND2!0.59!2.89!HAND2;;chr15:96877047..96877056,+!p39@NR2F2!0.59!2.89!NR2F2;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.89!ZFY;;chr5:2751762..2751784,-!p1@IRX2!0.59!2.89!IRX2;;chr6:1389824..1389840,+!p3@FOXF2!0.59!2.89!FOXF2;;chr7:101917447..101917479,+!p4@CUX1!0.59!2.89!CUX1;;chr7:27169801..27169844,-!p2@HOXA4!0.59!2.89!HOXA4;;chr11:113930401..113930422,+!p3@ZBTB16!0.59!2.89!ZBTB16;;chr12:115121770..115121781,-!p4@TBX3!0.59!2.89!TBX3;;chr19:47523058..47523114,+!p1@NPAS1!0.59!2.89!NPAS1;;chr17:41622765..41622821,-!p2@ETV4!0.58!4.63!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.05!NR2F2;;chr19:13136241..13136258,+!p7@NFIX!0.58!4.05!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.58!3.47!NR2F2;;chr19:3366570..3366619,+!p1@NFIC!0.57!107.65!NFIC;;chr9:35732592..35732640,+!p1@CREB3!0.57!44.57!CREB3;;chr3:126076264..126076305,-!p2@KLF15!0.57!4.05!KLF15;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.63!ZNF385A;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.37!C11orf9;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.63!TSC22D4;;chr6:43140095..43140145,+!p5@SRF!0.56!3.47!SRF;;chr5:92919375..92919438,+!p6@NR2F1!0.56!2.89!NR2F1;;chr6:43140149..43140177,+!p8@SRF!0.56!2.89!SRF;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.89!SHOX2;;chr11:65667846..65667868,-!p1@FOSL1!0.55!85.08!FOSL1;;chr17:17726907..17726958,-!p2@SREBF1!0.55!19.68!SREBF1;;chr1:8938766..8938774,-!p2@ENO1!0.54!217.62!ENO1;;chr4:2263809..2263854,-!p1@MXD4!0.54!121.54!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!0.54!6.37!HOXB2;;chr19:3366625..3366629,+!p4@NFIC!0.54!4.05!NFIC;;chr1:170633262..170633285,+!p3@PRRX1!0.54!2.89!PRRX1;;chr17:61920023..61920110,-!p1@SMARCD2!0.53!42.83!SMARCD2;;chr10:77161504..77161530,-!p1@ZNF503!0.53!40.51!ZNF503;;chr10:77161533..77161546,-!p2@ZNF503!0.53!11.58!ZNF503;;chr19:56652621..56652641,+!p2@ZNF444!0.53!5.79!ZNF444;;chr17:41623259..41623278,-!p7@ETV4!0.53!2.89!ETV4;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.46!DRAP1;;chr3:150126759..150126784,+!p2@TSC22D2!0.52!13.31!TSC22D2;;chr19:49864746..49864780,-!p2@TEAD2!0.52!3.47!TEAD2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.89!FOXD1;;chr6:1389871..1389876,+!p4@FOXF2!0.52!2.32!FOXF2;;chr2:102091144..102091183,-!p2@RFX8!0.52!2.32!RFX8;;chr2:85981008..85981025,+!p7@ATOH8!0.52!2.32!ATOH8;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.32!CREB3L1;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.32!TBX3;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.32!FOXG1;;chr14:29237009..29237049,+!p4@FOXG1!0.52!2.32!FOXG1;;chr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;chr6:42419928..42419963,-!p6@TRERF1!0.20!0.58!TRERF1;;chr6:45295979..45295986,+!p28@RUNX2!0.20!0.58!RUNX2;;chr7:100076646..100076657,-!p10@TSC22D4!0.20!0.58!TSC22D4;;chr7:100076673..100076682,-!p7@TSC22D4!0.20!0.58!TSC22D4;;chr7:138665870..138665905,-!p4@KIAA1549!0.20!0.58!KIAA1549;;chr7:14029034..14029087,-!p5@ETV1!0.20!0.58!ETV1;;chr7:149470297..149470337,-!p3@ZNF467!0.20!0.58!ZNF467;;chr7:150102756..150102772,+!p5@ZNF775!0.20!0.58!ZNF775;;chr7:150945663..150945692,-!p5@SMARCD3!0.20!0.58!SMARCD3;;chr7:15725992..15726043,-!p7@MEOX2!0.20!0.58!MEOX2;;chr7:19156632..19156652,-!p3@TWIST1!0.20!0.58!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!0.20!0.58!HOXA3;;chr7:27153443..27153450,-!p8@HOXA3!0.20!0.58!HOXA3;;chr7:27170042..27170064,-!p4@HOXA4!0.20!0.58!HOXA4;;chr7:27170274..27170308,-!p3@HOXA4!0.20!0.58!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.20!0.58!HOXA4;;chr7:27179852..27179863,-!p10@HOXA3!0.20!0.58!HOXA3;;chr7:27183114..27183138,-!p3@HOXA5!0.20!0.58!HOXA5;;chr7:27205136..27205164,-!p1@HOXA9!0.20!0.58!HOXA9;;chr7:27205175..27205184,-!p3@HOXA9!0.20!0.58!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!0.20!0.58!HOXA11;;chr7:35293665..35293680,-!p2@TBX20!0.20!0.58!TBX20;;chr7:42276771..42276782,-!p4@GLI3!0.20!0.58!GLI3;;chr7:73038889..73038905,-!p3@MLXIPL!0.20!0.58!MLXIPL;;chr8:106330515..106330525,+!p6@ZFPM2!0.20!0.58!ZFPM2;;chr8:11561684..11561751,+!p1@GATA4!0.20!0.58!GATA4;;chr8:145535006..145535018,+!p18@HSF1!0.20!0.58!HSF1;;chr8:22549856..22549885,-!p3@EGR3!0.20!0.58!EGR3;;chr8:25902668..25902680,-!p3@EBF2!0.20!0.58!EBF2;;chr8:30891078..30891128,-!p2@PURG!0.20!0.58!PURG;;chr8:55370487..55370503,+!p1@SOX17!0.20!0.58!SOX17;;chr8:60031840..60031869,-!p5@TOX!0.20!0.58!TOX;;chr8:60031934..60031986,-!p6@TOX!0.20!0.58!TOX;;chr8:72756194..72756208,-!p9@MSC!0.20!0.58!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.20!0.58!ZFHX4;;chr8:77593750..77593757,+!p3@ZFHX4!0.20!0.58!ZFHX4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.20!0.58!RUNX1T1;;chr8:93074872..93074884,-!p10@RUNX1T1!0.20!0.58!RUNX1T1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.20!0.58!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.20!0.58!ZFP37;;chr19:1863568..1863586,-!p1@KLF16!0.19!45.72!KLF16;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.68!NOC4L;;chr17:2304333..2304364,-!p1@MNT!0.19!18.52!MNT;;chr13:73633131..73633149,+!p1@KLF5!0.19!14.47!KLF5;;chr19:19516464..19516492,+!p4@GATAD2A!0.19!6.37!GATAD2A;;chr19:35264089..35264146,-!p1@ZNF599!0.19!6.37!ZNF599;;chr16:73092898..73092931,-!p1@ZFHX3!0.19!4.63!ZFHX3;;chr17:46125685..46125699,+!p3@NFE2L1!0.19!4.05!NFE2L1;;chr15:61521417..61521460,-!p2@RORA!0.19!2.32!RORA;;chr17:38256932..38256965,-!p4@NR1D1!0.19!2.32!NR1D1;;chr2:113993052..113993097,-!p2@PAX8!0.19!2.32!PAX8;;chr6:7108855..7108903,+!p5@RREB1!0.19!2.32!RREB1;;chr18:56532100..56532130,+!p1@ZNF532!0.19!1.74!ZNF532;;chr19:55987998..55988026,+!p2@ZNF628!0.19!1.74!ZNF628;;chr6:31515311..31515330,+!p3@NFKBIL1!0.19!1.16!NFKBIL1;;chr12:125002827..125002855,-!p5@NCOR2!0.19!1.16!NCOR2;;chr12:26277929..26277955,-!p3@BHLHE41!0.19!1.16!BHLHE41;;chr14:105886349..105886360,+!p3@MTA1!0.19!1.16!MTA1;;chr15:66994615..66994630,+!p3@SMAD6!0.19!1.16!SMAD6;;chr17:42297000..42297022,-!p15@UBTF!0.19!1.16!UBTF;;chr17:42297226..42297246,-!p14@UBTF!0.19!1.16!UBTF;;chr3:42947600..42947680,+!p1@ZNF662!0.19!1.16!ZNF662;;chr12:7079807..7079848,-!p1@PHB2!0.18!244.24!PHB2;;chr1:23885981..23886002,-!p1@ID3!0.18!242.51!ID3;; | |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.21!159.74!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.88!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.15!FOXF1;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.73!NFIX;;chr6:1389789..1389821,+!p1@FOXF2!1.39!32.41!FOXF2;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.18!CREB3L1;;chr17:46671108..46671147,-!p1@HOXB5!1.29!18.52!HOXB5;;chr6:34204921..34204939,+!p3@HMGA1!1.28!532.47!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.28!17.94!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.27!78.71!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.57!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.18!38.20!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!1.18!24.31!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.67!SIX1;;chr2:239756671..239756732,+!p1@TWIST2!1.17!43.99!TWIST2;;chr11:47279504..47279563,+!p1@NR1H3!1.14!28.94!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!1.13!56.14!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.26!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!28.94!HMGA2;;chr17:46675420..46675465,-!p3@HOXB6!1.06!12.15!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.04!12.73!DRAP1;;chr17:46655704..46655718,-!p2@HOXB4!1.03!14.47!HOXB4;;chr6:1389989..1390019,+!p2@FOXF2!1.03!9.84!FOXF2;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.13!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!61.93!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!1.01!48.04!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!1.01!13.31!NR2F2;;chr7:27183263..27183284,-!p2@HOXA5!1.01!9.26!HOXA5;;chr12:66218904..66218913,+!p11@HMGA2!1.01!9.26!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.68!CREB3L1;;chr8:25902876..25902936,-!p1@EBF2!0.99!8.68!EBF2;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.00!PRRX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.97!9.26!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.96!38.20!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.57!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.57!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.68!TWIST1;;chr19:13135582..13135600,+!p3@NFIX!0.93!7.52!NFIX;;chr20:42543441..42543497,+!p1@TOX2!0.90!32.41!TOX2;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.68!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!0.90!9.26!BCL3;;chr14:29235961..29236008,+!p1@FOXG1!0.90!6.95!FOXG1;;chr17:59477275..59477286,+!p3@TBX2!0.89!9.26!TBX2;;chr19:13134457..13134462,+!p5@NFIX!0.88!12.15!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.42!ZFP64;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.37!HMGA2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.37!PRRX2;;chr2:85981222..85981259,+!p2@ATOH8!0.85!10.42!ATOH8;;chr1:170632285..170632309,+!p1@PRRX1!0.85!6.95!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.84!11.00!ZFP106;;chr17:1959369..1959388,+!p2@HIC1!0.83!16.21!HIC1;;chr1:170633348..170633399,+!p2@PRRX1!0.83!8.10!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.82!680.06!HMGA1;;chr20:39946361..39946379,-!p2@ZHX3!0.81!17.36!ZHX3;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.31!DRAP1;;chr19:45261550..45261641,+!p6@BCL3!0.80!9.26!BCL3;;chr15:96874145..96874166,+!p7@NR2F2!0.79!10.42!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.79!5.21!HOXB4;;chr4:174451370..174451387,-!p1@HAND2!0.79!5.21!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.78!35.31!HIC1;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.68!FOXC1;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.79!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.78!5.79!SIX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.77!5.21!GLIS1;;chr8:128748308..128748324,+!p2@MYC!0.76!144.69!MYC;;chr1:8926441..8926473,-!p10@ENO1!0.76!7.52!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.75!119.81!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.75!20.84!STAT6;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.42!SOX15;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.79!NFE2;;chr14:29236269..29236285,+!p3@FOXG1!0.75!4.63!FOXG1;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.63!HOXA2;;chr17:46675558..46675577,-!p2@HOXB6!0.75!4.63!HOXB6;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.63!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.63!KDM5D;;chr15:96873984..96873999,+!p3@NR2F2!0.74!36.46!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.74!13.89!PCBP4;;chr3:12329397..12329433,+!p2@PPARG!0.74!11.00!PPARG;;chr10:77161133..77161176,-!p3@ZNF503!0.74!10.42!ZNF503;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.10!TBX2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.09!TBX3;;chr6:1312325..1312340,+!p1@FOXQ1!0.73!7.52!FOXQ1;;chr20:42543506..42543549,+!p2@TOX2!0.72!11.00!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.84!FOXD1;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.00!PPARG;;chr15:96874244..96874259,+!p5@NR2F2!0.71!11.00!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.71!5.79!HOXB2;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.79!EBF1;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.18!SNAI2;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.05!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.70!4.05!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!0.70!4.05!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.70!4.05!HOXA5;;chr12:114845810..114845824,-!p1@TBX5!0.70!4.05!TBX5;;chr2:46524537..46524553,+!p1@EPAS1!0.69!436.98!EPAS1;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.52!PCBP4;;chr16:86600426..86600441,+!p1@FOXC2!0.68!10.42!FOXC2;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.79!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.68!5.21!NFIX;;chr3:52001448..52001478,-!p2@PCBP4!0.67!59.61!PCBP4;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.15!DRAP1;;chr17:61919985..61920012,-!p3@SMARCD2!0.67!9.84!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.67!4.63!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.05!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.66!37.62!NR2F2;;chr17:61919812..61919833,-!p6@SMARCD2!0.66!4.63!SMARCD2;;chr20:39317868..39317884,-!p1@MAFB!0.65!48.04!MAFB;;chr12:53614115..53614154,-!p1@RARG!0.65!21.41!RARG;;chr1:170632250..170632277,+!p7@PRRX1!0.65!3.47!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.47!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.65!3.47!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!0.65!3.47!SOX11;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.25!HMGA1;;chr14:21994337..21994442,-!p1@SALL2!0.64!10.42!SALL2;;chr1:221053049..221053075,+!p3@HLX!0.64!6.37!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.64!5.21!HOXB7;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.41!CREB3;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.47!FOSL1;;chr18:3451646..3451691,+!p3@TGIF1!0.63!9.84!TGIF1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.37!ZNF454;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.63!4.05!DRAP1;;chr5:92919068..92919082,+!p5@NR2F1!0.63!4.05!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!0.62!491.38!CEBPD;;chr19:18392236..18392248,-!p2@JUND!0.62!24.89!JUND;;chr12:54447599..54447630,+!p3@HOXC4!0.62!4.05!HOXC4;;chr21:47063625..47063658,+!p1@PCBP3!0.61!15.63!PCBP3;;chr3:126076242..126076257,-!p1@KLF15!0.61!4.05!KLF15;;chr17:3571863..3571881,-!p1@TAX1BP3!0.60!259.29!TAX1BP3;;chr17:46126136..46126152,+!p1@NFE2L1!0.60!186.37!NFE2L1;;chr19:44037546..44037594,+!p1@ZNF575!0.60!6.95!ZNF575;;chr19:42788611..42788634,+!p2@CIC!0.60!5.21!CIC;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.79!NR2F2;;chr11:113930291..113930339,+!p2@ZBTB16!0.59!5.21!ZBTB16;;chr2:85980951..85981004,+!p1@ATOH8!0.59!5.21!ATOH8;;chr3:12330560..12330579,+!p1@PPARG!0.59!3.47!PPARG;;chr4:174450089..174450153,-!p2@HAND2!0.59!2.89!HAND2;;chr15:96877047..96877056,+!p39@NR2F2!0.59!2.89!NR2F2;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.89!ZFY;;chr5:2751762..2751784,-!p1@IRX2!0.59!2.89!IRX2;;chr6:1389824..1389840,+!p3@FOXF2!0.59!2.89!FOXF2;;chr7:101917447..101917479,+!p4@CUX1!0.59!2.89!CUX1;;chr7:27169801..27169844,-!p2@HOXA4!0.59!2.89!HOXA4;;chr11:113930401..113930422,+!p3@ZBTB16!0.59!2.89!ZBTB16;;chr12:115121770..115121781,-!p4@TBX3!0.59!2.89!TBX3;;chr19:47523058..47523114,+!p1@NPAS1!0.59!2.89!NPAS1;;chr17:41622765..41622821,-!p2@ETV4!0.58!4.63!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.05!NR2F2;;chr19:13136241..13136258,+!p7@NFIX!0.58!4.05!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.58!3.47!NR2F2;;chr19:3366570..3366619,+!p1@NFIC!0.57!107.65!NFIC;;chr9:35732592..35732640,+!p1@CREB3!0.57!44.57!CREB3;;chr3:126076264..126076305,-!p2@KLF15!0.57!4.05!KLF15;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.63!ZNF385A;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.37!C11orf9;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.63!TSC22D4;;chr6:43140095..43140145,+!p5@SRF!0.56!3.47!SRF;;chr5:92919375..92919438,+!p6@NR2F1!0.56!2.89!NR2F1;;chr6:43140149..43140177,+!p8@SRF!0.56!2.89!SRF;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.89!SHOX2;;chr11:65667846..65667868,-!p1@FOSL1!0.55!85.08!FOSL1;;chr17:17726907..17726958,-!p2@SREBF1!0.55!19.68!SREBF1;;chr1:8938766..8938774,-!p2@ENO1!0.54!217.62!ENO1;;chr4:2263809..2263854,-!p1@MXD4!0.54!121.54!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!0.54!6.37!HOXB2;;chr19:3366625..3366629,+!p4@NFIC!0.54!4.05!NFIC;;chr1:170633262..170633285,+!p3@PRRX1!0.54!2.89!PRRX1;;chr17:61920023..61920110,-!p1@SMARCD2!0.53!42.83!SMARCD2;;chr10:77161504..77161530,-!p1@ZNF503!0.53!40.51!ZNF503;;chr10:77161533..77161546,-!p2@ZNF503!0.53!11.58!ZNF503;;chr19:56652621..56652641,+!p2@ZNF444!0.53!5.79!ZNF444;;chr17:41623259..41623278,-!p7@ETV4!0.53!2.89!ETV4;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.46!DRAP1;;chr3:150126759..150126784,+!p2@TSC22D2!0.52!13.31!TSC22D2;;chr19:49864746..49864780,-!p2@TEAD2!0.52!3.47!TEAD2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.89!FOXD1;;chr6:1389871..1389876,+!p4@FOXF2!0.52!2.32!FOXF2;;chr2:102091144..102091183,-!p2@RFX8!0.52!2.32!RFX8;;chr2:85981008..85981025,+!p7@ATOH8!0.52!2.32!ATOH8;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.32!CREB3L1;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.32!TBX3;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.32!FOXG1;;chr14:29237009..29237049,+!p4@FOXG1!0.52!2.32!FOXG1;;chr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;chr6:42419928..42419963,-!p6@TRERF1!0.20!0.58!TRERF1;;chr6:45295979..45295986,+!p28@RUNX2!0.20!0.58!RUNX2;;chr7:100076646..100076657,-!p10@TSC22D4!0.20!0.58!TSC22D4;;chr7:100076673..100076682,-!p7@TSC22D4!0.20!0.58!TSC22D4;;chr7:138665870..138665905,-!p4@KIAA1549!0.20!0.58!KIAA1549;;chr7:14029034..14029087,-!p5@ETV1!0.20!0.58!ETV1;;chr7:149470297..149470337,-!p3@ZNF467!0.20!0.58!ZNF467;;chr7:150102756..150102772,+!p5@ZNF775!0.20!0.58!ZNF775;;chr7:150945663..150945692,-!p5@SMARCD3!0.20!0.58!SMARCD3;;chr7:15725992..15726043,-!p7@MEOX2!0.20!0.58!MEOX2;;chr7:19156632..19156652,-!p3@TWIST1!0.20!0.58!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!0.20!0.58!HOXA3;;chr7:27153443..27153450,-!p8@HOXA3!0.20!0.58!HOXA3;;chr7:27170042..27170064,-!p4@HOXA4!0.20!0.58!HOXA4;;chr7:27170274..27170308,-!p3@HOXA4!0.20!0.58!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.20!0.58!HOXA4;;chr7:27179852..27179863,-!p10@HOXA3!0.20!0.58!HOXA3;;chr7:27183114..27183138,-!p3@HOXA5!0.20!0.58!HOXA5;;chr7:27205136..27205164,-!p1@HOXA9!0.20!0.58!HOXA9;;chr7:27205175..27205184,-!p3@HOXA9!0.20!0.58!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!0.20!0.58!HOXA11;;chr7:35293665..35293680,-!p2@TBX20!0.20!0.58!TBX20;;chr7:42276771..42276782,-!p4@GLI3!0.20!0.58!GLI3;;chr7:73038889..73038905,-!p3@MLXIPL!0.20!0.58!MLXIPL;;chr8:106330515..106330525,+!p6@ZFPM2!0.20!0.58!ZFPM2;;chr8:11561684..11561751,+!p1@GATA4!0.20!0.58!GATA4;;chr8:145535006..145535018,+!p18@HSF1!0.20!0.58!HSF1;;chr8:22549856..22549885,-!p3@EGR3!0.20!0.58!EGR3;;chr8:25902668..25902680,-!p3@EBF2!0.20!0.58!EBF2;;chr8:30891078..30891128,-!p2@PURG!0.20!0.58!PURG;;chr8:55370487..55370503,+!p1@SOX17!0.20!0.58!SOX17;;chr8:60031840..60031869,-!p5@TOX!0.20!0.58!TOX;;chr8:60031934..60031986,-!p6@TOX!0.20!0.58!TOX;;chr8:72756194..72756208,-!p9@MSC!0.20!0.58!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.20!0.58!ZFHX4;;chr8:77593750..77593757,+!p3@ZFHX4!0.20!0.58!ZFHX4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.20!0.58!RUNX1T1;;chr8:93074872..93074884,-!p10@RUNX1T1!0.20!0.58!RUNX1T1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.20!0.58!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.20!0.58!ZFP37;;chr19:1863568..1863586,-!p1@KLF16!0.19!45.72!KLF16;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.68!NOC4L;;chr17:2304333..2304364,-!p1@MNT!0.19!18.52!MNT;;chr13:73633131..73633149,+!p1@KLF5!0.19!14.47!KLF5;;chr19:19516464..19516492,+!p4@GATAD2A!0.19!6.37!GATAD2A;;chr19:35264089..35264146,-!p1@ZNF599!0.19!6.37!ZNF599;;chr16:73092898..73092931,-!p1@ZFHX3!0.19!4.63!ZFHX3;;chr17:46125685..46125699,+!p3@NFE2L1!0.19!4.05!NFE2L1;;chr15:61521417..61521460,-!p2@RORA!0.19!2.32!RORA;;chr17:38256932..38256965,-!p4@NR1D1!0.19!2.32!NR1D1;;chr2:113993052..113993097,-!p2@PAX8!0.19!2.32!PAX8;;chr6:7108855..7108903,+!p5@RREB1!0.19!2.32!RREB1;;chr18:56532100..56532130,+!p1@ZNF532!0.19!1.74!ZNF532;;chr19:55987998..55988026,+!p2@ZNF628!0.19!1.74!ZNF628;;chr6:31515311..31515330,+!p3@NFKBIL1!0.19!1.16!NFKBIL1;;chr12:125002827..125002855,-!p5@NCOR2!0.19!1.16!NCOR2;;chr12:26277929..26277955,-!p3@BHLHE41!0.19!1.16!BHLHE41;;chr14:105886349..105886360,+!p3@MTA1!0.19!1.16!MTA1;;chr15:66994615..66994630,+!p3@SMAD6!0.19!1.16!SMAD6;;chr17:42297000..42297022,-!p15@UBTF!0.19!1.16!UBTF;;chr17:42297226..42297246,-!p14@UBTF!0.19!1.16!UBTF;;chr3:42947600..42947680,+!p1@ZNF662!0.19!1.16!ZNF662;;chr12:7079807..7079848,-!p1@PHB2!0.18!244.24!PHB2;;chr1:23885981..23886002,-!p1@ID3!0.18!242.51!ID3;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002600;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11513-119H1 | |id=FF:11513-119H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000184 | ||
|is_obsolete= | |||
|library_id=CNhs11329 | |||
|library_id_phase_based=2:CNhs11329 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11513 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TAGCTT.11513 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11513 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TAGCTT.11513 | |||
|name=Smooth Muscle Cells - Tracheal, donor1 | |name=Smooth Muscle Cells - Tracheal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11329,LSID768,release014,COMPLETED | |profile_hcage=CNhs11329,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0380023575792621,0,0.515658115329287,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.160902404804953,0,0,0,0,0,0,0,0,0.142765520946319,0,0,0,0.437167932714935,0,0.020848220902112,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435952424767612,0.099160193832824,0,0,0.110316050696387,0.185312721065532,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00278659991036313,0,0,0,0.414430138349403,0.885958673194241,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3415 | |rna_catalog_number=SC3415 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119H1 | |rna_tube_id=119H1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114 | |top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11513-119H1;search_select_hide=table117:FF:11513-119H1 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Smooth Muscle Cells - Tracheal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11329 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11329
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11329
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.255 |
| 10 | 10 | 0.713 |
| 100 | 100 | 0.569 |
| 101 | 101 | 0.782 |
| 102 | 102 | 0.639 |
| 103 | 103 | 0.174 |
| 104 | 104 | 0.452 |
| 105 | 105 | 0.366 |
| 106 | 106 | 0.0435 |
| 107 | 107 | 0.0499 |
| 108 | 108 | 0.195 |
| 109 | 109 | 0.115 |
| 11 | 11 | 0.0591 |
| 110 | 110 | 0.134 |
| 111 | 111 | 0.344 |
| 112 | 112 | 0.329 |
| 113 | 113 | 0.274 |
| 114 | 114 | 0.131 |
| 115 | 115 | 0.296 |
| 116 | 116 | 0.129 |
| 117 | 117 | 0.616 |
| 118 | 118 | 0.592 |
| 119 | 119 | 0.216 |
| 12 | 12 | 0.675 |
| 120 | 120 | 0.528 |
| 121 | 121 | 0.811 |
| 122 | 122 | 0.886 |
| 123 | 123 | 0.371 |
| 124 | 124 | 0.148 |
| 125 | 125 | 0.56 |
| 126 | 126 | 0.556 |
| 127 | 127 | 0.194 |
| 128 | 128 | 0.0314 |
| 129 | 129 | 0.513 |
| 13 | 13 | 0.497 |
| 130 | 130 | 0.87 |
| 131 | 131 | 0.949 |
| 132 | 132 | 0.553 |
| 133 | 133 | 0.861 |
| 134 | 134 | 0.477 |
| 135 | 135 | 0.123 |
| 136 | 136 | 0.658 |
| 137 | 137 | 0.226 |
| 138 | 138 | 0.583 |
| 139 | 139 | 0.117 |
| 14 | 14 | 0.885 |
| 140 | 140 | 0.673 |
| 141 | 141 | 0.644 |
| 142 | 142 | 0.723 |
| 143 | 143 | 0.0284 |
| 144 | 144 | 0.457 |
| 145 | 145 | 0.256 |
| 146 | 146 | 0.537 |
| 147 | 147 | 0.288 |
| 148 | 148 | 0.232 |
| 149 | 149 | 0.00767 |
| 15 | 15 | 0.432 |
| 150 | 150 | 0.54 |
| 151 | 151 | 0.344 |
| 152 | 152 | 0.128 |
| 153 | 153 | 0.646 |
| 154 | 154 | 0.381 |
| 155 | 155 | 0.56 |
| 156 | 156 | 0.991 |
| 157 | 157 | 0.433 |
| 158 | 158 | 0.142 |
| 159 | 159 | 0.531 |
| 16 | 16 | 0.0556 |
| 160 | 160 | 0.0248 |
| 161 | 161 | 0.672 |
| 162 | 162 | 0.29 |
| 163 | 163 | 0.814 |
| 164 | 164 | 0.539 |
| 165 | 165 | 0.929 |
| 166 | 166 | 0.723 |
| 167 | 167 | 0.396 |
| 168 | 168 | 0.971 |
| 169 | 169 | 0.0399 |
| 17 | 17 | 0.133 |
| 18 | 18 | 0.0843 |
| 19 | 19 | 0.0448 |
| 2 | 2 | 0.315 |
| 20 | 20 | 0.409 |
| 21 | 21 | 0.122 |
| 22 | 22 | 0.0793 |
| 23 | 23 | 0.127 |
| 24 | 24 | 0.192 |
| 25 | 25 | 0.904 |
| 26 | 26 | 0.0527 |
| 27 | 27 | 0.154 |
| 28 | 28 | 0.287 |
| 29 | 29 | 0.587 |
| 3 | 3 | 0.252 |
| 30 | 30 | 0.305 |
| 31 | 31 | 0.298 |
| 32 | 32 | 1.34589e-6 |
| 33 | 33 | 0.311 |
| 34 | 34 | 0.231 |
| 35 | 35 | 0.6 |
| 36 | 36 | 0.642 |
| 37 | 37 | 0.185 |
| 38 | 38 | 0.319 |
| 39 | 39 | 0.217 |
| 4 | 4 | 0.474 |
| 40 | 40 | 0.0569 |
| 41 | 41 | 0.5 |
| 42 | 42 | 0.54 |
| 43 | 43 | 0.135 |
| 44 | 44 | 0.415 |
| 45 | 45 | 0.403 |
| 46 | 46 | 0.0772 |
| 47 | 47 | 0.255 |
| 48 | 48 | 0.275 |
| 49 | 49 | 0.141 |
| 5 | 5 | 0.713 |
| 50 | 50 | 0.42 |
| 51 | 51 | 0.358 |
| 52 | 52 | 0.258 |
| 53 | 53 | 0.875 |
| 54 | 54 | 0.324 |
| 55 | 55 | 0.246 |
| 56 | 56 | 0.237 |
| 57 | 57 | 0.294 |
| 58 | 58 | 0.865 |
| 59 | 59 | 0.0293 |
| 6 | 6 | 0.982 |
| 60 | 60 | 0.264 |
| 61 | 61 | 0.505 |
| 62 | 62 | 0.631 |
| 63 | 63 | 0.162 |
| 64 | 64 | 0.167 |
| 65 | 65 | 0.0654 |
| 66 | 66 | 0.775 |
| 67 | 67 | 0.806 |
| 68 | 68 | 0.0349 |
| 69 | 69 | 0.0743 |
| 7 | 7 | 0.855 |
| 70 | 70 | 0.0233 |
| 71 | 71 | 0.0693 |
| 72 | 72 | 0.708 |
| 73 | 73 | 0.0804 |
| 74 | 74 | 0.948 |
| 75 | 75 | 0.418 |
| 76 | 76 | 0.758 |
| 77 | 77 | 0.0329 |
| 78 | 78 | 0.843 |
| 79 | 79 | 0.117 |
| 8 | 8 | 0.0172 |
| 80 | 80 | 0.688 |
| 81 | 81 | 0.315 |
| 82 | 82 | 0.169 |
| 83 | 83 | 0.3 |
| 84 | 84 | 0.391 |
| 85 | 85 | 0.057 |
| 86 | 86 | 0.872 |
| 87 | 87 | 0.289 |
| 88 | 88 | 0.266 |
| 89 | 89 | 0.0346 |
| 9 | 9 | 0.258 |
| 90 | 90 | 0.402 |
| 91 | 91 | 0.136 |
| 92 | 92 | 0.0461 |
| 93 | 93 | 0.559 |
| 94 | 94 | 0.164 |
| 95 | 95 | 0.397 |
| 96 | 96 | 0.443 |
| 97 | 97 | 0.517 |
| 98 | 98 | 0.117 |
| 99 | 99 | 0.00371 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11329
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000184 human smooth muscle cell of trachea sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
