FFCP PHASE1:Hg19::chr5:43233373..43233374,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-98bp_to_ENST00000501221_5end | |association_with_transcript=-98bp_to_ENST00000501221_5end | ||
|cluster_id=chr5:43233373..43233374,- | |||
|coexpression_cluster_id=C3284 | |||
|description=CAGE_peak_1_at_ENST00000501221_5end | |description=CAGE_peak_1_at_ENST00000501221_5end | ||
|id=chr5:43233373..43233374,- | |id=chr5:43233373..43233374,- | ||
|ontology_enrichment_celltype=CL:0000055!3.74e-12!180;CL:0000183!1.67e-08!59;CL:0000393!5.92e-08!60;CL:0000211!5.92e-08!60;CL:0000680!1.22e-07!57;CL:0000056!1.22e-07!57;CL:0000355!1.22e-07!57;CL:0000133!4.35e-07!59;CL:0000187!5.44e-07!54;CL:0002319!5.79e-07!25 | |ontology_enrichment_celltype=CL:0000055!3.74e-12!180;CL:0000183!1.67e-08!59;CL:0000393!5.92e-08!60;CL:0000211!5.92e-08!60;CL:0000680!1.22e-07!57;CL:0000056!1.22e-07!57;CL:0000355!1.22e-07!57;CL:0000133!4.35e-07!59;CL:0000187!5.44e-07!54;CL:0002319!5.79e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002319;4.77e-10;25!CL:0000128;1.88e-09;7!CL:0000126;1.88e-09;7!CL:0000127;1.88e-09;7!CL:0002605;1.13e-08;3!CL:0000192;1.27e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.33e-10,25;CL:0000393,1.20e-09,61;CL:0000211,1.20e-09,61;CL:0000128,1.60e-09,7;CL:0000126,1.60e-09,7;CL:0000127,1.60e-09,7;CL:0002453,1.60e-09,7;CL:0000047,4.53e-09,8;CL:0002605,9.32e-09,3;CL:0000192,1.39e-08,43;CL:0000514,1.39e-08,43;CL:0000680,1.23e-07,58;CL:0000056,1.23e-07,58;CL:0000355,1.23e-07,58;CL:0000187,3.85e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;1.27e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.82e-17!82;UBERON:0000073!1.92e-16!94;UBERON:0001016!1.92e-16!94;UBERON:0005743!3.97e-16!86;UBERON:0004121!1.81e-13!169;UBERON:0000955!3.49e-13!69;UBERON:0006238!3.49e-13!69;UBERON:0000924!3.55e-13!173;UBERON:0006601!3.55e-13!173;UBERON:0003075!5.08e-13!86;UBERON:0007284!5.08e-13!86;UBERON:0000119!5.62e-13!312;UBERON:0000483!7.21e-13!309;UBERON:0002346!1.83e-12!90;UBERON:0001049!2.57e-12!57;UBERON:0005068!2.57e-12!57;UBERON:0006241!2.57e-12!57;UBERON:0007135!2.57e-12!57;UBERON:0002616!3.45e-12!59;UBERON:0000033!6.40e-12!123;UBERON:0000468!1.15e-11!659;UBERON:0000153!3.82e-11!129;UBERON:0007811!3.82e-11!129;UBERON:0000475!1.10e-10!365;UBERON:0000025!1.36e-10!194;UBERON:0000467!6.90e-10!625;UBERON:0000480!9.93e-10!626;UBERON:0003056!1.39e-09!61;UBERON:0000922!3.37e-09!612;UBERON:0002049!4.14e-09!79;UBERON:0007798!4.14e-09!79;UBERON:0002780!6.39e-09!41;UBERON:0001890!6.39e-09!41;UBERON:0006240!6.39e-09!41;UBERON:0000923!1.01e-08!604;UBERON:0005291!1.01e-08!604;UBERON:0006598!1.01e-08!604;UBERON:0002532!1.01e-08!604;UBERON:0004111!1.40e-08!241;UBERON:0002050!1.42e-08!605;UBERON:0005423!1.42e-08!605;UBERON:0000477!1.71e-08!286;UBERON:0003080!2.05e-08!42;UBERON:0001893!2.34e-08!34;UBERON:0002791!2.88e-08!33;UBERON:0002020!5.66e-08!34;UBERON:0003528!5.66e-08!34;UBERON:0001869!2.45e-07!32 | |ontology_enrichment_uberon=UBERON:0001017!7.82e-17!82;UBERON:0000073!1.92e-16!94;UBERON:0001016!1.92e-16!94;UBERON:0005743!3.97e-16!86;UBERON:0004121!1.81e-13!169;UBERON:0000955!3.49e-13!69;UBERON:0006238!3.49e-13!69;UBERON:0000924!3.55e-13!173;UBERON:0006601!3.55e-13!173;UBERON:0003075!5.08e-13!86;UBERON:0007284!5.08e-13!86;UBERON:0000119!5.62e-13!312;UBERON:0000483!7.21e-13!309;UBERON:0002346!1.83e-12!90;UBERON:0001049!2.57e-12!57;UBERON:0005068!2.57e-12!57;UBERON:0006241!2.57e-12!57;UBERON:0007135!2.57e-12!57;UBERON:0002616!3.45e-12!59;UBERON:0000033!6.40e-12!123;UBERON:0000468!1.15e-11!659;UBERON:0000153!3.82e-11!129;UBERON:0007811!3.82e-11!129;UBERON:0000475!1.10e-10!365;UBERON:0000025!1.36e-10!194;UBERON:0000467!6.90e-10!625;UBERON:0000480!9.93e-10!626;UBERON:0003056!1.39e-09!61;UBERON:0000922!3.37e-09!612;UBERON:0002049!4.14e-09!79;UBERON:0007798!4.14e-09!79;UBERON:0002780!6.39e-09!41;UBERON:0001890!6.39e-09!41;UBERON:0006240!6.39e-09!41;UBERON:0000923!1.01e-08!604;UBERON:0005291!1.01e-08!604;UBERON:0006598!1.01e-08!604;UBERON:0002532!1.01e-08!604;UBERON:0004111!1.40e-08!241;UBERON:0002050!1.42e-08!605;UBERON:0005423!1.42e-08!605;UBERON:0000477!1.71e-08!286;UBERON:0003080!2.05e-08!42;UBERON:0001893!2.34e-08!34;UBERON:0002791!2.88e-08!33;UBERON:0002020!5.66e-08!34;UBERON:0003528!5.66e-08!34;UBERON:0001869!2.45e-07!32 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.21e-13,81;UBERON:0001016,8.67e-13,89;UBERON:0000025,1.53e-10,192;UBERON:0000483,4.53e-10,306;UBERON:0000119,7.45e-10,309;UBERON:0003075,1.64e-09,82;UBERON:0007284,1.64e-09,82;UBERON:0001049,3.01e-09,56;UBERON:0005068,3.01e-09,56;UBERON:0006241,3.01e-09,56;UBERON:0007135,3.01e-09,56;UBERON:0002346,7.89e-09,86;UBERON:0000955,9.26e-09,68;UBERON:0006238,9.26e-09,68;UBERON:0000073,1.26e-08,53;UBERON:0002616,1.26e-08,53;UBERON:0004121,1.29e-08,171;UBERON:0000924,1.29e-08,171;UBERON:0006601,1.29e-08,171;UBERON:0005423,1.95e-08,581;UBERON:0004111,2.07e-08,240;UBERON:0000923,3.34e-08,560;UBERON:0010316,3.34e-08,560;UBERON:0005291,3.34e-08,560;UBERON:0006598,3.34e-08,560;UBERON:0010317,3.34e-08,560;UBERON:0002532,3.34e-08,560;UBERON:0002050,4.99e-08,564;UBERON:0000922,5.75e-08,592;UBERON:0010371,3.40e-07,104;UBERON:0001134,6.49e-07,62;UBERON:0002036,6.49e-07,62;UBERON:0003082,6.49e-07,62 | |||
|phase1_expression=1.09007027562334,0.214100523890983,0.563817616383885,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.436882744260345,0.263766978228454,0.74259811776028,0,0.672325146451775,0,1.46062018077475,0,1.23121058076788,0.612002073732759,2.82109249330279,3.14859585844162,1.23186982565596,1.50651167513763,0,0,0,0,0,0.154816123316076,0,0,0,0.154934401160603,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0.393419540227666,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0.541607727530031,0,0,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0.850813354476611,0.443458794925128,0.614843499851882,0.0654895377488563,0,0,0.324547393654683,0.348259474598534,1.06366368415092,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0,1.37559020970034,0.417989933073621,0,0,0.33472061276467,1.20848795132744,0,0.488124115096339,0,4.0507097394088,0.267899184852239,0,0,1.53316637465883,1.89853131913626,0.549605231791222,0,0,0,0,0.379891534993739,0.397227542439656,0.573673241497627,0,0,1.06748995729705,0.74000264525148,0,0.134710672069688,0.326923806226917,0,0.576175924479999,0,0.624320153660641,0,0.448346041655403,0.117434498643765,0.161872944368132,0,0.204154171254893,0.737005903870608,0,2.37600571456411,0.247266929278557,0.910161361938026,0.718618141816238,0.168336113954066,1.25118519871964,0,0.877955241761676,0.919463387397059,0.150238058906597,0.680593098960126,0,0,0,0.300091096084402,0.103052529238439,0,0.18611685633159,0.337552664482532,0.0974370051611986,0.504867548488229,0.736399189138395,0,0.355009592516614,0.302256294682921,0.339121184620975,0.193260853163297,0.272746120590835,0.286804595389004,0.121973706129595,0.265059536642971,0.232387885739037,0.310983165046111,0.504641701751257,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,1.2347220339942,4.41026134156626,0,0,0,0.441463099414651,0,0.343135620597051,0.768251997860379,0,0,0,0,1.03993478527958,1.44331342025273,0.579652024875384,0.234817388471643,0.433099343283221,0.925971025153221,0.761016608938393,0,0,0.738651018262192,0.468008530278475,0.594524649154913,0,0.335964256397719,0,0.179117045405697,0,0.383382679165211,0,0.088048434013226,1.65862492432618,0.720599767084807,0.12624243342638,0.126995788584338,0.763976851116555,0,0,0,0.300343057843917,0,0.224262168690721,0,0.51336800074665,0.258543431515556,0,0,0.531876233169741,0,0.771622122786426,1.41849132023278,1.0656887160644,0,0,2.46972101034231,0,0,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0.502257091432126,0,0,0,0,1.30303176000821,0.205476322550383,0.358121926479791,0,0,0,0,1.52456774533478,6.50699269288109,3.09315525111078,8.37581326671744,3.82763250991898,0.749007023947182,0,0.414415513436035,0,0,0.271265023699736,0.415941723061614,0,0.157702415033935,0.35142424497814,0.902838299183157,0,0,0.664225598535437,0.553107505625109,0.60818530127658,0.391602314925481,0.343143423810856,0,0,0.106727557803444,0,0,0,0.744323423456331,0.460385919864187,1.12264037773229,0.384417447767103,0,0.482561763430822,0,0.308419387605311,0.532685175939381,0.739144404124282,0.519254429183621,0,0,1.20303882181971,0,0.114814448164607,0.910455840033585,0.786746489756545,0.902399225814824,1.07821471946181,0.784349769176855,0,0.949964660035881,0,0.510281115829547,0.215915916102139,0,1.62567862526312,2.00675909541941,0,0,1.34324852833307,0,0,0,0.328014645699706,0.325378394664303,0,0.0915694648183434,0.165018999841176,0,0,0,0.580024309752732,0.154048617114644,0.307007349452259,0.413509717453592,0.214840489736547,0.145016693914229,0.767039646744908,2.49289699810865,0,0,0.127612712494584,0,0,0,0.6970372701606,0.924100740528266,1.06461206063404,0,1.48259375283136,0.286249773483982,0.744316738719335,1.2655176988749,0.571890581771475,1.79128453917934,1.28381696410176,0.318203247925937,0.78494864019923,1.43897966066652,0.54907405947211,0.706874414074119,1.01091240786658,3.17020642346017,0,0.975267478179181,0.243713489631284,0,0,0.424216295861138,1.13008116620243,0,3.3171948762061,0,0,0,1.42037263873893,1.8589409885985,0.563391205064483,0.430234056612155,0.392996164052485,0.35667105148125,1.77380532035299,0.211107635297664,0.329294892959902,0.75894634753143,0.699869440489966,0,0,0,0,0.86101074534246,0,0,0,0,0,0,0,0.822724546172388,0,1.08006287447623,0,0,0.962479855263359,0,0,0.432807638929335,0.0711418433484141,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0.222886768554957,0.284136146806413,0.23874448473769,0.593929361665277,0,0,0.422008249231538,0.111308705022906,0,0.422250816255987,0,0.276283915531148,0.755798243562828,0.306806047506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| ||
|short_description=p1@ENST00000501221 | |short_description=p1@ENST00000501221 | ||
}} | }} |
Latest revision as of 14:59, 30 July 2015
Short description: | p1@ENST00000501221 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000501221_5end |
Coexpression cluster: | C3284_Neurons_Neural_brain_duodenum_occipital_temporal_parietal |
Association with transcript: | -98bp_to_ENST00000501221_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.33e-10 | 25 |
electrically responsive cell | 1.20e-09 | 61 |
electrically active cell | 1.20e-09 | 61 |
oligodendrocyte | 1.60e-09 | 7 |
macroglial cell | 1.60e-09 | 7 |
astrocyte | 1.60e-09 | 7 |
oligodendrocyte precursor cell | 1.60e-09 | 7 |
neuronal stem cell | 4.53e-09 | 8 |
astrocyte of the cerebral cortex | 9.32e-09 | 3 |
smooth muscle cell | 1.39e-08 | 43 |
smooth muscle myoblast | 1.39e-08 | 43 |
muscle precursor cell | 1.23e-07 | 58 |
myoblast | 1.23e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.23e-07 | 58 |
muscle cell | 3.85e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.21e-13 | 81 |
nervous system | 8.67e-13 | 89 |
tube | 1.53e-10 | 192 |
epithelium | 4.53e-10 | 306 |
cell layer | 7.45e-10 | 309 |
neural plate | 1.64e-09 | 82 |
presumptive neural plate | 1.64e-09 | 82 |
neural tube | 3.01e-09 | 56 |
neural rod | 3.01e-09 | 56 |
future spinal cord | 3.01e-09 | 56 |
neural keel | 3.01e-09 | 56 |
neurectoderm | 7.89e-09 | 86 |
brain | 9.26e-09 | 68 |
future brain | 9.26e-09 | 68 |
regional part of nervous system | 1.26e-08 | 53 |
regional part of brain | 1.26e-08 | 53 |
ectoderm-derived structure | 1.29e-08 | 171 |
ectoderm | 1.29e-08 | 171 |
presumptive ectoderm | 1.29e-08 | 171 |
developing anatomical structure | 1.95e-08 | 581 |
anatomical conduit | 2.07e-08 | 240 |
germ layer | 3.34e-08 | 560 |
germ layer / neural crest | 3.34e-08 | 560 |
embryonic tissue | 3.34e-08 | 560 |
presumptive structure | 3.34e-08 | 560 |
germ layer / neural crest derived structure | 3.34e-08 | 560 |
epiblast (generic) | 3.34e-08 | 560 |
embryonic structure | 4.99e-08 | 564 |
embryo | 5.75e-08 | 592 |
ecto-epithelium | 3.40e-07 | 104 |
skeletal muscle tissue | 6.49e-07 | 62 |
striated muscle tissue | 6.49e-07 | 62 |
myotome | 6.49e-07 | 62 |