FF:11461-119B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005825 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008124;DRR008996;DRZ000421;DRZ001806;DRZ011771;DRZ013156 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.34!218.89!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.01!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.93!84.67!EHF;;chr1:6479968..6479986,-!p1@HES2!1.84!68.77!HES2;;chr5:134369905..134369972,-!p1@PITX1!1.80!92.81!PITX1;;chr1:209979411..209979433,-!p2@IRF6!1.76!56.94!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.75!62.49!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!54.72!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.62!40.67!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.60!79.13!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.58!56.57!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.57!35.87!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.46!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!36.98!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.50!82.82!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.44!26.62!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.42!256.98!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.51!SOX7;;chr20:22565185..22565223,-!p3@FOXA2!1.42!25.14!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!1.32!19.97!FOXA2;;chr22:19748231..19748317,+!p1@TBX1!1.31!19.60!TBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.31!19.60!SPDEF;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.23!ZNF750;;chr3:111314186..111314204,-!p1@ZBED2!1.28!18.12!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.24!141.62!PPP1R13L;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.27!IRX2;;chr14:37131058..37131139,+!p1@PAX9!1.23!15.90!PAX9;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.19!14.42!SPDEF;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.31!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.16!13.31!GRHL3;;chr14:90085820..90085840,-!p6@FOXN3!1.12!12.20!FOXN3;;chr20:22564895..22564910,-!p1@FOXA2!1.11!11.83!FOXA2;;chr17:8027418..8027432,-!p1@HES7!1.10!11.46!HES7;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.68!PRDM1;;chr15:101069113..101069169,-!p1@CERS3!1.07!10.72!CERS3;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.16!FOXQ1;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.24!TFAP2A;;chr11:34642656..34642667,+!p2@EHF!1.01!9.24!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!0.99!8.87!NKX2-8;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.29!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.98!8.50!OTX1;;chr1:24645921..24645973,+!p2@GRHL3!0.98!8.50!GRHL3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.97!31.80!ZBTB7B;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.13!TFCP2L1;;chr4:57547454..57547469,-!p1@HOPX!0.94!7.76!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!0.89!45.48!SNAI2;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr2:70142232..70142251,+!p1@MXD1!0.88!39.19!MXD1;;chr17:46132044..46132080,+!p4@NFE2L1!0.88!6.66!NFE2L1;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.66!GRHL2;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.72!ETV4;;chr21:36260773..36260804,-!p7@RUNX1!0.87!8.87!RUNX1;;chr2:46524878..46524891,+!p3@EPAS1!0.86!11.46!EPAS1;;chr3:189507460..189507471,+!p3@TP63!0.86!6.29!TP63;;chr1:209979375..209979386,-!p4@IRF6!0.86!6.29!IRF6;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.29!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.29!OVOL1;;chr6:34204672..34204692,+!p1@HMGA1!0.85!732.85!HMGA1;;chr11:120107344..120107351,+!p1@POU2F3!0.85!7.40!POU2F3;;chr1:154975229..154975247,+!p6@ZBTB7B!0.84!5.92!ZBTB7B;;chr1:50889155..50889173,-!p2@DMRTA2!0.82!5.55!DMRTA2;;chr5:2751785..2751808,-!p2@IRX2!0.82!5.55!IRX2;;chr12:66218598..66218645,+!p2@HMGA2!0.81!26.99!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.49!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.90!POU2F2;;chr8:128748308..128748324,+!p2@MYC!0.80!160.84!MYC;;chr12:27485762..27485776,+!p3@ARNTL2!0.80!15.16!ARNTL2;;chr6:10413188..10413249,-!p7@TFAP2A!0.79!5.18!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!0.79!5.18!ZBED2;;chr17:45928443..45928473,-!p2@SP6!0.79!5.18!SP6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.19!ZC3H12A;;chr2:239148671..239148686,-!p1@HES6!0.77!19.23!HES6;;chr12:53625966..53626012,-!p2@RARG!0.76!13.68!RARG;;chr11:34645791..34645836,+!p3@EHF!0.76!4.81!EHF;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.81!PRDM1;;chr20:18038521..18038571,-!p1@OVOL2!0.76!4.81!OVOL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.75!364.95!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.75!135.33!FOSL1;;chrX:107018969..107019024,-!p6@TSC22D3!0.75!6.66!TSC22D3;;chr17:41623075..41623101,-!p9@ETV4!0.75!5.55!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.74!152.34!HMGA1;;chr12:48298765..48298783,-!p2@VDR!0.74!9.98!VDR;;chr1:24646263..24646277,+!p4@GRHL3!0.74!4.44!GRHL3;;chr6:10419768..10419819,-!p6@TFAP2A!0.74!4.44!TFAP2A;;chr13:73636252..73636307,+!p2@KLF5!0.73!5.18!KLF5;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.34!ETV4;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.76!TWIST2;;chr8:49833978..49833996,-!p1@SNAI2!0.71!97.25!SNAI2;;chr14:21566731..21566836,-!p1@ZNF219!0.71!49.92!ZNF219;;chr12:66218003..66218018,+!p9@HMGA2!0.71!5.18!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.71!5.18!ETV4;;chr11:64073022..64073056,+!p1@ESRRA!0.70!53.98!ESRRA;;ch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XP4;;chr8:80680078..80680101,-!p3@HEY1!0.20!0.74!HEY1;;chr14:64971346..64971357,-!p9@ZBTB25!0.20!0.74!ZBTB25;;chr2:178129414..178129517,-!p1@NFE2L2!0.19!55.83!NFE2L2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.24!BCL3;;chr6:32157947..32157992,-!p1@PBX2!0.19!23.29!PBX2;;chr7:137686824..137686865,-!p2@CREB3L2!0.19!17.01!CREB3L2;;chr19:42724436..42724507,+!p1@ZNF526!0.19!11.09!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.19!9.98!TFAP4;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.50!SREBF1;;chr6:43138999..43139017,+!p2@SRF!0.19!7.76!SRF;;chr12:57400261..57400344,-!p1@ZBTB39!0.19!5.92!ZBTB39;;chr6:20403916..20403965,+!p3@E2F3!0.19!5.55!E2F3;;chr2:27357446..27357475,-!p2@PREB!0.19!4.07!PREB;;chr7:148787768..148787825,-!p1@ZNF786!0.19!3.70!ZNF786;;chrX:106959661..106959763,-!p4@TSC22D3!0.19!3.33!TSC22D3;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.33!ZNF836;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.33!NFIA;;chr13:45011349..45011391,-!p4@TSC22D1!0.19!2.59!TSC22D1;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.22!ZNF32;;chr14:61191018..61191048,-!p1@SIX4!0.19!2.22!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.19!2.22!ZNF283;;chr14:74353454..74353469,+!p4@ZNF410!0.19!1.85!ZNF410;;chr11:130184644..130184662,-!p5@ZBTB44!0.19!1.48!ZBTB44;;chr9:35732312..35732324,+!p4@CREB3!0.19!1.48!CREB3;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.48!NFIB;;chr15:31619871..31619884,+!p8@KLF13!0.19!1.48!KLF13;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.48!ZNF771;;chr16:30546275..30546297,-!p2@ZNF747!0.19!1.11!ZNF747;;chr3:126076264..126076305,-!p2@KLF15!0.19!1.11!KLF15;;chr8:128750983..128751021,+!p11@MYC!0.19!1.11!MYC;;chr1:120190761..120190782,-!p2@ZNF697!0.19!1.11!ZNF697;;chr19:59030961..59030974,-!p4@ZBTB45!0.19!0.74!ZBTB45;;chr20:44600785..44600794,-!p7@ZNF335!0.19!0.74!ZNF335;;chr2:27805971..27805981,+!p3@ZNF512!0.19!0.74!ZNF512;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.74!SIX1;;chr17:17726892..17726903,-!p6@SREBF1!0.19!0.74!SREBF1;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.74!RFXANK;;chr8:80680024..80680046,-!p2@HEY1!0.19!0.74!HEY1;;chr16:89940012..89940059,+!p1@TCF25!0.18!117.21!TCF25;;chr19:1652575..1652621,-!p1@TCF3!0.18!52.51!TCF3;;chr11:128392085..128392232,-!p1@ETS1!0.18!45.48!ETS1;;chr18:51750948..51751059,-!p1@MBD2!0.18!43.26!MBD2;;chr19:11071685..11071798,+!p1@SMARCA4!0.18!38.45!SMARCA4;;chr19:56152361..56152434,+!p1@ZNF580!0.18!36.24!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.18!23.66!ZBTB17;;chr3:52001448..52001478,-!p2@PCBP4!0.18!18.49!PCBP4;;chr22:30162924..30163005,-!p1@ZMAT5!0.18!16.27!ZMAT5;;chr6:7107939..7107993,+!p1@RREB1!0.18!15.53!RREB1;;chr19:57702846..57702891,+!p1@ZNF264!0.18!13.31!ZNF264;;chr11:13299319..13299424,+!p1@ARNTL!0.18!13.31!ARNTL;;chr12:8185288..8185339,+!p1@FOXJ2!0.18!13.31!FOXJ2;;chr6:44233252..44233296,-!p1@NFKBIE!0.18!12.94!NFKBIE;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.57!ZNF576;;chr19:58662139..58662182,-!p1@ZNF329!0.18!5.92!ZNF329;;chr7:150076406..150076456,+!p1@ZNF775!0.18!5.55!ZNF775;;chr16:73092898..73092931,-!p1@ZFHX3!0.18!4.44!ZFHX3;;chr12:53848505..53848532,+!p4@PCBP2!0.18!2.22!PCBP2;;chr19:50879683..50879695,+!p2@NR1H2!0.18!2.22!NR1H2;;chr2:121493425..121493474,+!p1@GLI2!0.18!2.22!GLI2;;chr6:42419043..42419087,-!p2@TRERF1!0.18!1.85!TRERF1;;chr19:6280007..6280019,-!p3@MLLT1!0.18!1.85!MLLT1;;chr4:38665753..38665757,+!p7@KLF3!0.18!1.48!KLF3;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.48!TSC22D1;;chr7:148844581..148844606,+!p2@ZNF398!0.18!1.48!ZNF398;;chr1:151431674..151431685,-!p4@POGZ!0.18!1.11!POGZ;;chr1:42800614..42800649,-!p5@FOXJ3!0.18!1.11!FOXJ3;;chrX:131623932..131623964,-!p7@MBNL3!0.18!1.11!MBNL3;;chrX:107019163..107019179,-!p7@TSC22D3!0.18!0.74!TSC22D3;;chr6:32158004..32158015,-!p2@PBX2!0.18!0.74!PBX2;;chr7:148844498..148844507,+!p6@ZNF398!0.18!0.74!ZNF398;;chr7:99156011..99156036,+!p7@ZNF655!0.18!0.74!ZNF655;;chr7:99679311..99679322,-!p3@ZNF3!0.18!0.74!ZNF3;;chr3:169381420..169381535,-!p1@MECOM!0.18!0.74!MECOM;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.74!TGIF1;;chr18:56530595..56530606,+!p11@ZNF532!0.18!0.74!ZNF532;;chr5:149380256..149380343,+!p1@HMGXB3!0.17!39.19!HMGXB3;;chr19:39390587..39390646,+!p1@NFKBIB!0.17!20.71!NFKBIB;;chr1:6685228..6685270,+!p1@THAP3!0.17!8.87!THAP3;;chr2:42795839..42795887,+!p2@MTA3!0.17!8.50!MTA3;;chr3:40518599..40518664,+!p1@ZNF619!0.17!7.03!ZNF619;;chr14:74226747..74226779,-!p3@C14orf43!0.17!6.66!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.17!5.92!C14orf43;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.44!MEIS1;;chr2:208030488..208030551,-!p3@KLF7!0.17!4.07!KLF7;;chr7:17338324..17338341,+!p3@AHR!0.17!3.70!AHR;;chr14:64971288..64971316,-!p2@ZBTB25!0.17!3.33!ZBTB25;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.96!RUNX1;;chr4:1873155..1873185,+!p3@WHSC1!0.17!2.96!WHSC1;;chr2:74229812..74229867,+!p1@TET3!0.17!2.59!TET3;;chr14:35872962..35873025,-!p3@NFKBIA!0.17!2.59!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.17!2.22!CARHSP1;;chr19:17356436..17356481,-!p3@NR2F6!0.17!1.48!NR2F6;;chr12:3068501..3068515,+!p4@TEAD4!0.17!1.48!TEAD4;;c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| 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XP4;;chr8:80680078..80680101,-!p3@HEY1!0.20!0.74!HEY1;;chr14:64971346..64971357,-!p9@ZBTB25!0.20!0.74!ZBTB25;;chr2:178129414..178129517,-!p1@NFE2L2!0.19!55.83!NFE2L2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.24!BCL3;;chr6:32157947..32157992,-!p1@PBX2!0.19!23.29!PBX2;;chr7:137686824..137686865,-!p2@CREB3L2!0.19!17.01!CREB3L2;;chr19:42724436..42724507,+!p1@ZNF526!0.19!11.09!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.19!9.98!TFAP4;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.50!SREBF1;;chr6:43138999..43139017,+!p2@SRF!0.19!7.76!SRF;;chr12:57400261..57400344,-!p1@ZBTB39!0.19!5.92!ZBTB39;;chr6:20403916..20403965,+!p3@E2F3!0.19!5.55!E2F3;;chr2:27357446..27357475,-!p2@PREB!0.19!4.07!PREB;;chr7:148787768..148787825,-!p1@ZNF786!0.19!3.70!ZNF786;;chrX:106959661..106959763,-!p4@TSC22D3!0.19!3.33!TSC22D3;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.33!ZNF836;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.33!NFIA;;chr13:45011349..45011391,-!p4@TSC22D1!0.19!2.59!TSC22D1;;chr10:44144264..44144286,-!p2@ZNF32!0.19!2.22!ZNF32;;chr14:61191018..61191048,-!p1@SIX4!0.19!2.22!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.19!2.22!ZNF283;;chr14:74353454..74353469,+!p4@ZNF410!0.19!1.85!ZNF410;;chr11:130184644..130184662,-!p5@ZBTB44!0.19!1.48!ZBTB44;;chr9:35732312..35732324,+!p4@CREB3!0.19!1.48!CREB3;;chr9:14082760..14082775,-!p6@NFIB!0.19!1.48!NFIB;;chr15:31619871..31619884,+!p8@KLF13!0.19!1.48!KLF13;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.48!ZNF771;;chr16:30546275..30546297,-!p2@ZNF747!0.19!1.11!ZNF747;;chr3:126076264..126076305,-!p2@KLF15!0.19!1.11!KLF15;;chr8:128750983..128751021,+!p11@MYC!0.19!1.11!MYC;;chr1:120190761..120190782,-!p2@ZNF697!0.19!1.11!ZNF697;;chr19:59030961..59030974,-!p4@ZBTB45!0.19!0.74!ZBTB45;;chr20:44600785..44600794,-!p7@ZNF335!0.19!0.74!ZNF335;;chr2:27805971..27805981,+!p3@ZNF512!0.19!0.74!ZNF512;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.74!SIX1;;chr17:17726892..17726903,-!p6@SREBF1!0.19!0.74!SREBF1;;chr19:19303794..19303805,+!p5@RFXANK!0.19!0.74!RFXANK;;chr8:80680024..80680046,-!p2@HEY1!0.19!0.74!HEY1;;chr16:89940012..89940059,+!p1@TCF25!0.18!117.21!TCF25;;chr19:1652575..1652621,-!p1@TCF3!0.18!52.51!TCF3;;chr11:128392085..128392232,-!p1@ETS1!0.18!45.48!ETS1;;chr18:51750948..51751059,-!p1@MBD2!0.18!43.26!MBD2;;chr19:11071685..11071798,+!p1@SMARCA4!0.18!38.45!SMARCA4;;chr19:56152361..56152434,+!p1@ZNF580!0.18!36.24!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.18!23.66!ZBTB17;;chr3:52001448..52001478,-!p2@PCBP4!0.18!18.49!PCBP4;;chr22:30162924..30163005,-!p1@ZMAT5!0.18!16.27!ZMAT5;;chr6:7107939..7107993,+!p1@RREB1!0.18!15.53!RREB1;;chr19:57702846..57702891,+!p1@ZNF264!0.18!13.31!ZNF264;;chr11:13299319..13299424,+!p1@ARNTL!0.18!13.31!ARNTL;;chr12:8185288..8185339,+!p1@FOXJ2!0.18!13.31!FOXJ2;;chr6:44233252..44233296,-!p1@NFKBIE!0.18!12.94!NFKBIE;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.18!12.57!ZNF576;;chr19:58662139..58662182,-!p1@ZNF329!0.18!5.92!ZNF329;;chr7:150076406..150076456,+!p1@ZNF775!0.18!5.55!ZNF775;;chr16:73092898..73092931,-!p1@ZFHX3!0.18!4.44!ZFHX3;;chr12:53848505..53848532,+!p4@PCBP2!0.18!2.22!PCBP2;;chr19:50879683..50879695,+!p2@NR1H2!0.18!2.22!NR1H2;;chr2:121493425..121493474,+!p1@GLI2!0.18!2.22!GLI2;;chr6:42419043..42419087,-!p2@TRERF1!0.18!1.85!TRERF1;;chr19:6280007..6280019,-!p3@MLLT1!0.18!1.85!MLLT1;;chr4:38665753..38665757,+!p7@KLF3!0.18!1.48!KLF3;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.48!TSC22D1;;chr7:148844581..148844606,+!p2@ZNF398!0.18!1.48!ZNF398;;chr1:151431674..151431685,-!p4@POGZ!0.18!1.11!POGZ;;chr1:42800614..42800649,-!p5@FOXJ3!0.18!1.11!FOXJ3;;chrX:131623932..131623964,-!p7@MBNL3!0.18!1.11!MBNL3;;chrX:107019163..107019179,-!p7@TSC22D3!0.18!0.74!TSC22D3;;chr6:32158004..32158015,-!p2@PBX2!0.18!0.74!PBX2;;chr7:148844498..148844507,+!p6@ZNF398!0.18!0.74!ZNF398;;chr7:99156011..99156036,+!p7@ZNF655!0.18!0.74!ZNF655;;chr7:99679311..99679322,-!p3@ZNF3!0.18!0.74!ZNF3;;chr3:169381420..169381535,-!p1@MECOM!0.18!0.74!MECOM;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.74!TGIF1;;chr18:56530595..56530606,+!p11@ZNF532!0.18!0.74!ZNF532;;chr5:149380256..149380343,+!p1@HMGXB3!0.17!39.19!HMGXB3;;chr19:39390587..39390646,+!p1@NFKBIB!0.17!20.71!NFKBIB;;chr1:6685228..6685270,+!p1@THAP3!0.17!8.87!THAP3;;chr2:42795839..42795887,+!p2@MTA3!0.17!8.50!MTA3;;chr3:40518599..40518664,+!p1@ZNF619!0.17!7.03!ZNF619;;chr14:74226747..74226779,-!p3@C14orf43!0.17!6.66!C14orf43;;chr14:74226783..74226819,-!p4@C14orf43!0.17!5.92!C14orf43;;chr2:66662249..66662267,+!p2@MEIS1!0.17!4.44!MEIS1;;chr2:208030488..208030551,-!p3@KLF7!0.17!4.07!KLF7;;chr7:17338324..17338341,+!p3@AHR!0.17!3.70!AHR;;chr14:64971288..64971316,-!p2@ZBTB25!0.17!3.33!ZBTB25;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.96!RUNX1;;chr4:1873155..1873185,+!p3@WHSC1!0.17!2.96!WHSC1;;chr2:74229812..74229867,+!p1@TET3!0.17!2.59!TET3;;chr14:35872962..35873025,-!p3@NFKBIA!0.17!2.59!NFKBIA;;chr16:8962544..8962584,-!p2@CARHSP1!0.17!2.22!CARHSP1;;chr19:17356436..17356481,-!p3@NR2F6!0.17!1.48!NR2F6;;chr12:3068501..3068515,+!p4@TEAD4!0.17!1.48!TEAD4;;c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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor6.CNhs12062.11461-119B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11461-119B3 | |id=FF:11461-119B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000015 | ||
|is_obsolete= | |||
|library_id=CNhs12062 | |||
|library_id_phase_based=2:CNhs12062 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11461 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11461 | |||
|name=Bronchial Epithelial Cell, donor6 | |name=Bronchial Epithelial Cell, donor6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12062,LSID838,release011,COMPLETED | |profile_hcage=CNhs12062,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0801084053993974,0.240426435485783,0.049297236645582,0.558776574684672,0,0,0,0,0,0,0,0,0.136642580572897,0,0.240426435485783,0,0,0.170807524503245,0,0,0,0.253828380085109,0,0.35669949867716,0,0,0.261322747134458,0,0,0,0,0,0,0,0,0,0,0.324130534851672,0,0.200713151275616,0.346642226252401,0,0,0,0,0,0,0,0.0441062691736141,0,0,0,0,0,0,0,0.0396502193302916,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0.136642580572897,0,0,0,-0.066593981521827,0,0,0,0,0,0,0.0164824628957653,0,0,0,0.0459515408379944,0.01613129477674,0,0,0,0,-0.0980353512377064,0.507681270864739,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0910391147779905,0.241766948505469,0,0,0.136642580572897,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.197784277494474,0.180615392328201,0,0,-0.0230225484998808,0,0,0,0,0,0,0,0,0,0.576656245042853,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.168829650325511,0,-0.105936770863061,0.0682983194955286,0,0,0,0,-0.201919379047876,0,0.0157630967791561,-0.0827201683234173,0,0.210074810708238,-0.0180665814730617,0,0,0,0.519875311802223,0.477440466532198,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,0.0765499824443246,0.00788154838957805,0,-0.0999561735206667,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.190346016106072,-0.0304099808375785,0,0.136642580572897,0,-0.0233114681849272,0,0,0.390650871665951,0.354040098698559,-0.0168894869089043,0.158325236070241,0,-0.165747146437016,0.0154357327960887,-0.126560977668958,0.0459515408379944,-0.147401849371139,0.134148815301825,0,-0.0599968396507106,-0.150006842259613,0.0196058897291141,0.165409436302285,0.0162371831832192,-0.135807716867348,0.201758656037811,0,0.136642580572897,0,0.158881062337265,0,0,0.0647713765547605,0.123599930516459,0.0184362552643102,0.289786731688398,0.191492801300473,0.11384019093275,-0.0395325284566706,-0.00277905795137734,-0.011965824878489,-0.224432656447039,0,0,0,-0.107836248598968,-0.188432797103041,-0.10816941300846,0,-0.347334881238084,-0.0683442610773682,0,-0.307549690851369,0.0228479317290506,0,0,0.0187020791328698,0,0,0,0,0,0.170166903112717,-0.145212806116846,-0.096212980982648,0,-0.052676834262749,0.0348952748635361,0.121666792392446,0,-0.027948095840566,-0.00936731688449743,0.0962051845520277,0.134687596727227,0,0.09247784506064,0.0387013079063105,-0.0379741357609071,0.0322625895534799,-0.0584468268118252,-0.222815173605512,-0.110901341746044,0.326259088703498,-0.234053773758692,-0.0495419489604577,-0.0881268324752877,0,-0.428887355573163,-0.224840736676307,0,-0.145183793059481,0,-0.236205229955569,0,-0.369362977637774,0,0.004011525064192,-0.300007315987457,-0.302646794007789,0.024311063138245,0,0.149907677932602,0.647275963866754,0.136642580572897,0.109072348669237,-0.00689480264295215,0.240426435485783,-0.0137245027617426,0.0930504268178769,0.0187361298476955,-0.138989456679195,0,-0.0547169815352327,0,0,-0.152967894971942,-0.235476037764389,0,-0.00466787165030596,-0.101546154043177,-0.280085506343622,0.0206715071379627,0,0,0.660235613772471,0,0,0.0659424324284525,0,0.0164824628957653,-0.116683760913859,0,-0.108622809454255,0,0,-0.177527765965176,0,-0.143280830563994,0,0,0.401246414401026,0.020014467582764,0,0,0,0,0,0,0,0,0.0563893724915605,0,0,-0.537050725968374,-0.218190749643551,0,0.106730434684114,0,0,0,0,0,0,0,0,0.580568537465546,-0.00443306398921229,-0.12301741567642,0.0683212902864485,0,0,0,-0.215723402553475,-0.066593981521827,0,-0.131862706497632,0,0.0683212902864485,0,0,0.0505015907836854,0,0,0,0,-0.057730457053664,0.083132643625868,0,0,0,0.878719961156582,0,0,0,0,-0.0332704642577153,0,0,-0.63193017338638,0,0.110766593032922,-0.0815818795468414,0,0.117322262227825,0.382440775461653,0.687567493041216,0,0.240426435485783,-0.261347131789888,0,0,-0.399678534778849,0,0.136642580572897,0,0,0,0,0,0,0,-0.0776719318268589,0,0,0,0,0,0,0,0,0,0,0,0.00288183663487862,0.231906478193162,0,0,0,0,0,0,0,0.4637887830912,-0.0675821905190275,0,0,0,0,0,0.136642580572897,0,0,-0.334783359090345,0,0,0,0,0,0.0396502193302916,0,0,0,0,0.793422614517673,0,0,-0.0369356967077305,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200811448816225,0.130122522089306,0,0,0,0,0,0.240426435485783,0,0.049297236645582,0,0.324130534851672,0,0,0.126542061776806,0,0,0,-0.104796384789156,0,0.0801084053993974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227328697472609,0,0,0,-0.234551769991467,0,-0.150564935400013,-0.105638571178972,0,0,-0.002241794920757,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.35669949867716,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0984773430569384,0.158768428042384,-0.066529360934138,0,0,0,-0.054385572482455,0,0,0.0409774382668622,0,0.0698651931539954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170807524503245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597479310004282,0.591852027977845,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.136642580572897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39427933691332,0,0,0,0.299347245045023,0,0,0,0,0,0,0,0,0.324130534851672,0,0,0,0,0.192204360246729,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490231107898008,0,0,0,0,0.346642226252401,0,0,0,0,0,0,0,-0.0208769547446218,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481752568565919,0,0,0.253932794789354,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.0882125383472281,0,0,0,0,0,0,0,0,1.24647224800183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120213217742891,0.0927807062332315,0.241766948505469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=CA502-R10a | |rna_catalog_number=CA502-R10a | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.10540361984857e-226!GO:0005737;cytoplasm;1.84386855527039e-200!GO:0043226;organelle;1.35249958381922e-173!GO:0043229;intracellular organelle;3.47200399541534e-173!GO:0043231;intracellular membrane-bound organelle;2.59364587179901e-163!GO:0043227;membrane-bound organelle;4.07615130686642e-163!GO:0044444;cytoplasmic part;5.56850658488592e-137!GO:0044422;organelle part;4.61203082395186e-128!GO:0044446;intracellular organelle part;1.10270555692096e-126!GO:0044237;cellular metabolic process;2.4004930368287e-85!GO:0032991;macromolecular complex;1.30939533455342e-84!GO:0044238;primary metabolic process;3.33459325315348e-84!GO:0030529;ribonucleoprotein complex;1.67340298663684e-79!GO:0005739;mitochondrion;2.62442825157182e-73!GO:0043170;macromolecule metabolic process;2.16357755942866e-72!GO:0005515;protein binding;1.97820604814291e-66!GO:0043233;organelle lumen;3.30903962542222e-63!GO:0031974;membrane-enclosed lumen;3.30903962542222e-63!GO:0019538;protein metabolic process;7.28731932163433e-55!GO:0044428;nuclear part;1.82844502908861e-54!GO:0003723;RNA binding;2.23538741212912e-54!GO:0005840;ribosome;4.10245088760957e-54!GO:0006412;translation;1.70030399766964e-53!GO:0031090;organelle membrane;1.42047930689896e-52!GO:0005634;nucleus;2.53548113165419e-51!GO:0009058;biosynthetic process;6.43580973851527e-51!GO:0003735;structural constituent of ribosome;1.88651128253009e-48!GO:0044267;cellular protein metabolic process;1.88651128253009e-48!GO:0044260;cellular macromolecule metabolic process;2.62773519810305e-48!GO:0044429;mitochondrial part;3.02238838183971e-48!GO:0044249;cellular biosynthetic process;1.75225050437115e-47!GO:0015031;protein transport;8.60001728222119e-45!GO:0033036;macromolecule localization;2.61590804137395e-43!GO:0009059;macromolecule biosynthetic process;3.28460940020441e-43!GO:0005829;cytosol;3.77143417136963e-42!GO:0043234;protein complex;1.56956420171817e-41!GO:0045184;establishment of protein localization;3.60084580234807e-41!GO:0033279;ribosomal subunit;4.65268856584855e-41!GO:0008104;protein localization;4.7565839404473e-41!GO:0006396;RNA processing;6.25309974619646e-41!GO:0016043;cellular component organization and biogenesis;3.76413132418836e-40!GO:0031967;organelle envelope;1.05262673325078e-39!GO:0031975;envelope;2.51791237687077e-39!GO:0043283;biopolymer metabolic process;1.24937130226957e-35!GO:0031981;nuclear lumen;8.8182494502688e-35!GO:0046907;intracellular transport;5.79517011542752e-33!GO:0010467;gene expression;6.00114132444834e-32!GO:0065003;macromolecular complex assembly;7.78515915561341e-32!GO:0043228;non-membrane-bound organelle;7.25014373458025e-31!GO:0043232;intracellular non-membrane-bound organelle;7.25014373458025e-31!GO:0005740;mitochondrial envelope;1.01115677431957e-30!GO:0006886;intracellular protein transport;2.13484082977123e-30!GO:0016071;mRNA metabolic process;1.97919155751935e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.06379548224168e-29!GO:0031966;mitochondrial membrane;1.33878095496039e-28!GO:0022607;cellular component assembly;8.43398684340501e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.47259136178002e-27!GO:0019866;organelle inner membrane;9.21177427330094e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.52412177142982e-26!GO:0008380;RNA splicing;5.18430726572837e-26!GO:0006996;organelle organization and biogenesis;1.74639976540217e-25!GO:0005743;mitochondrial inner membrane;1.96949666459954e-25!GO:0006397;mRNA processing;4.61970575955393e-25!GO:0044445;cytosolic part;1.50451289352884e-22!GO:0031980;mitochondrial lumen;1.03612975626197e-21!GO:0005759;mitochondrial matrix;1.03612975626197e-21!GO:0015934;large ribosomal subunit;1.67648952281582e-21!GO:0012505;endomembrane system;4.12733554158204e-21!GO:0051649;establishment of cellular localization;6.74040953507183e-21!GO:0051641;cellular localization;9.18907407904739e-21!GO:0006119;oxidative phosphorylation;1.05151452841174e-20!GO:0015935;small ribosomal subunit;1.24676830562334e-20!GO:0016874;ligase activity;2.0723392913506e-20!GO:0005654;nucleoplasm;2.33442240817757e-20!GO:0005681;spliceosome;8.77510992932161e-20!GO:0005783;endoplasmic reticulum;2.09385654164754e-19!GO:0044455;mitochondrial membrane part;3.17650443285822e-19!GO:0051186;cofactor metabolic process;5.79682972792688e-19!GO:0006457;protein folding;7.39648551334508e-19!GO:0006259;DNA metabolic process;8.06902230002362e-18!GO:0000166;nucleotide binding;3.79465004132332e-17!GO:0044432;endoplasmic reticulum part;7.45045590912405e-17!GO:0044451;nucleoplasm part;7.45045590912405e-17!GO:0048770;pigment granule;7.96287698239431e-17!GO:0042470;melanosome;7.96287698239431e-17!GO:0044265;cellular macromolecule catabolic process;1.40167921870416e-16!GO:0006512;ubiquitin cycle;1.42010494427263e-16!GO:0005730;nucleolus;2.10394687835343e-16!GO:0016462;pyrophosphatase activity;4.86031363618439e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.14871886201202e-16!GO:0006732;coenzyme metabolic process;5.82658398722009e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.10170420290212e-16!GO:0044248;cellular catabolic process;7.34204527332571e-16!GO:0006605;protein targeting;7.72371913886489e-16!GO:0043285;biopolymer catabolic process;8.02630203587534e-16!GO:0022618;protein-RNA complex assembly;9.81600082527142e-16!GO:0009057;macromolecule catabolic process;1.65398393134302e-15!GO:0005794;Golgi apparatus;1.69936910275283e-15!GO:0005746;mitochondrial respiratory chain;3.25981605904252e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.40820685205142e-15!GO:0005761;mitochondrial ribosome;3.40820685205142e-15!GO:0000313;organellar ribosome;3.40820685205142e-15!GO:0017111;nucleoside-triphosphatase activity;3.6134095178909e-15!GO:0043412;biopolymer modification;5.07753127139224e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.5337854436894e-15!GO:0019941;modification-dependent protein catabolic process;9.25250685607683e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.25250685607683e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.20717791534436e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.20717791534436e-14!GO:0044257;cellular protein catabolic process;1.52539883401267e-14!GO:0008134;transcription factor binding;2.10985350870252e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.1611995841784e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68068132110897e-14!GO:0051082;unfolded protein binding;7.09545027145029e-14!GO:0006464;protein modification process;8.43152357570835e-14!GO:0008135;translation factor activity, nucleic acid binding;1.15447044173242e-13!GO:0048193;Golgi vesicle transport;1.31485982329722e-13!GO:0030163;protein catabolic process;1.88745566808131e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.91092428456178e-13!GO:0003954;NADH dehydrogenase activity;1.91092428456178e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.91092428456178e-13!GO:0012501;programmed cell death;2.57916174837979e-13!GO:0009055;electron carrier activity;3.98163185619335e-13!GO:0006915;apoptosis;4.28139234905214e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.28139234905214e-13!GO:0005789;endoplasmic reticulum membrane;7.47645688520618e-13!GO:0003676;nucleic acid binding;2.85445581614304e-12!GO:0017076;purine nucleotide binding;3.48919849455566e-12!GO:0007049;cell cycle;3.48919849455566e-12!GO:0016192;vesicle-mediated transport;5.75765095896977e-12!GO:0006399;tRNA metabolic process;6.03696203315588e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.33634131264902e-12!GO:0042773;ATP synthesis coupled electron transport;7.33634131264902e-12!GO:0042254;ribosome biogenesis and assembly;7.39689659560621e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.58259600107028e-12!GO:0032553;ribonucleotide binding;7.83068525264723e-12!GO:0032555;purine ribonucleotide binding;7.83068525264723e-12!GO:0043687;post-translational protein modification;1.08520600156602e-11!GO:0016070;RNA metabolic process;1.11380025440897e-11!GO:0008219;cell death;1.24895106535046e-11!GO:0016265;death;1.24895106535046e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.26413586131063e-11!GO:0045271;respiratory chain complex I;1.26413586131063e-11!GO:0005747;mitochondrial respiratory chain complex I;1.26413586131063e-11!GO:0006461;protein complex assembly;2.78213128030846e-11!GO:0051188;cofactor biosynthetic process;3.02219655303866e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.33597756578203e-11!GO:0008565;protein transporter activity;5.73634781611087e-11!GO:0009056;catabolic process;7.1346084286522e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.50375753784556e-11!GO:0000375;RNA splicing, via transesterification reactions;8.50375753784556e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.50375753784556e-11!GO:0003743;translation initiation factor activity;8.73322825464734e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.5556276139104e-10!GO:0006413;translational initiation;1.85600373598311e-10!GO:0006913;nucleocytoplasmic transport;1.91833616621183e-10!GO:0051169;nuclear transport;3.53887536723786e-10!GO:0009259;ribonucleotide metabolic process;5.43449815114264e-10!GO:0005635;nuclear envelope;5.98909269316017e-10!GO:0043067;regulation of programmed cell death;6.63796072680125e-10!GO:0042981;regulation of apoptosis;8.6209173533799e-10!GO:0006446;regulation of translational initiation;1.00211985187221e-09!GO:0016491;oxidoreductase activity;1.21105281518383e-09!GO:0006163;purine nucleotide metabolic process;1.48251538937902e-09!GO:0030554;adenyl nucleotide binding;2.00891272673441e-09!GO:0005524;ATP binding;2.08828390987085e-09!GO:0005793;ER-Golgi intermediate compartment;2.20701829137964e-09!GO:0009150;purine ribonucleotide metabolic process;2.35899388696185e-09!GO:0017038;protein import;2.41458742854128e-09!GO:0008639;small protein conjugating enzyme activity;2.82545226638053e-09!GO:0032559;adenyl ribonucleotide binding;3.4372305012269e-09!GO:0009108;coenzyme biosynthetic process;3.917796216174e-09!GO:0031965;nuclear membrane;3.92629351590064e-09!GO:0022402;cell cycle process;4.93671784010678e-09!GO:0048475;coated membrane;5.03047247660463e-09!GO:0030117;membrane coat;5.03047247660463e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.13817735426713e-09!GO:0005768;endosome;5.52398588813761e-09!GO:0030120;vesicle coat;5.55549138413917e-09!GO:0030662;coated vesicle membrane;5.55549138413917e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.70147512722452e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.70147512722452e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.70147512722452e-09!GO:0004842;ubiquitin-protein ligase activity;5.77294009810714e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.5533807092172e-09!GO:0003712;transcription cofactor activity;7.46524078034467e-09!GO:0044453;nuclear membrane part;8.06647093993454e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;8.55748910159713e-09!GO:0019787;small conjugating protein ligase activity;9.24478327671154e-09!GO:0009141;nucleoside triphosphate metabolic process;9.40610570722325e-09!GO:0006164;purine nucleotide biosynthetic process;1.12027125945384e-08!GO:0009260;ribonucleotide biosynthetic process;1.18646101823773e-08!GO:0043038;amino acid activation;1.54255762027584e-08!GO:0006418;tRNA aminoacylation for protein translation;1.54255762027584e-08!GO:0043039;tRNA aminoacylation;1.54255762027584e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.55379771823876e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.76502760480447e-08!GO:0006974;response to DNA damage stimulus;2.01800360347011e-08!GO:0016881;acid-amino acid ligase activity;2.59035909188463e-08!GO:0007005;mitochondrion organization and biogenesis;2.70477116149118e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.21088268555908e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.21088268555908e-08!GO:0006323;DNA packaging;3.21307154860285e-08!GO:0016740;transferase activity;3.46460144680043e-08!GO:0015986;ATP synthesis coupled proton transport;4.0732993093655e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.0732993093655e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.27627849520728e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.27627849520728e-08!GO:0016604;nuclear body;4.34353502020847e-08!GO:0051246;regulation of protein metabolic process;5.45626837173875e-08!GO:0000074;regulation of progression through cell cycle;5.45626837173875e-08!GO:0051726;regulation of cell cycle;6.02246957909287e-08!GO:0006366;transcription from RNA polymerase II promoter;6.90280123330692e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.13079279930327e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.13079279930327e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.27005399300638e-08!GO:0006364;rRNA processing;9.6232705512359e-08!GO:0016072;rRNA metabolic process;1.28229592485546e-07!GO:0000278;mitotic cell cycle;1.29572105594508e-07!GO:0048523;negative regulation of cellular process;1.41294973655975e-07!GO:0005643;nuclear pore;1.57827644947507e-07!GO:0019829;cation-transporting ATPase activity;2.08666757289554e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.4038781226487e-07!GO:0046034;ATP metabolic process;2.82078742373092e-07!GO:0051276;chromosome organization and biogenesis;2.96167644240396e-07!GO:0044431;Golgi apparatus part;3.22107012330957e-07!GO:0042623;ATPase activity, coupled;3.29129949917208e-07!GO:0065002;intracellular protein transport across a membrane;3.39519095604377e-07!GO:0009060;aerobic respiration;3.54565144910917e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.88852996501884e-07!GO:0016887;ATPase activity;4.19173686987037e-07!GO:0006752;group transfer coenzyme metabolic process;4.34510797029499e-07!GO:0043069;negative regulation of programmed cell death;5.43362190576841e-07!GO:0009719;response to endogenous stimulus;5.64589619293596e-07!GO:0003924;GTPase activity;6.10880591427286e-07!GO:0016787;hydrolase activity;6.34320028582808e-07!GO:0006754;ATP biosynthetic process;6.72225138459191e-07!GO:0006753;nucleoside phosphate metabolic process;6.72225138459191e-07!GO:0009117;nucleotide metabolic process;7.25041994095977e-07!GO:0006916;anti-apoptosis;7.5834308368613e-07!GO:0065004;protein-DNA complex assembly;7.95089606764686e-07!GO:0006091;generation of precursor metabolites and energy;1.15780789972208e-06!GO:0043066;negative regulation of apoptosis;1.28169139796902e-06!GO:0045333;cellular respiration;1.62534858925023e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.66472815869328e-06!GO:0006281;DNA repair;1.9657756138779e-06!GO:0048519;negative regulation of biological process;2.03973874905901e-06!GO:0032446;protein modification by small protein conjugation;2.36013540555782e-06!GO:0016607;nuclear speck;2.69007661100184e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.69306806341501e-06!GO:0046930;pore complex;2.80054021710387e-06!GO:0006333;chromatin assembly or disassembly;3.03830393944084e-06!GO:0000785;chromatin;3.24635369804359e-06!GO:0016567;protein ubiquitination;3.67149356282776e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.81078624996353e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.25588989080972e-06!GO:0051170;nuclear import;4.70704707995903e-06!GO:0005773;vacuole;4.80917597077832e-06!GO:0045259;proton-transporting ATP synthase complex;5.13521102825123e-06!GO:0005762;mitochondrial large ribosomal subunit;5.13521102825123e-06!GO:0000315;organellar large ribosomal subunit;5.13521102825123e-06!GO:0045454;cell redox homeostasis;5.18690631159815e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.45890054433245e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.52147998968435e-06!GO:0043623;cellular protein complex assembly;6.33881176690467e-06!GO:0016779;nucleotidyltransferase activity;6.80797910633998e-06!GO:0006606;protein import into nucleus;7.09707115906164e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.18563211881906e-06!GO:0006099;tricarboxylic acid cycle;7.70025684553576e-06!GO:0046356;acetyl-CoA catabolic process;7.70025684553576e-06!GO:0000139;Golgi membrane;8.20294631668997e-06!GO:0009109;coenzyme catabolic process;1.01403261768415e-05!GO:0006793;phosphorus metabolic process;1.08152419892014e-05!GO:0006796;phosphate metabolic process;1.08152419892014e-05!GO:0044440;endosomal part;1.23175832194262e-05!GO:0010008;endosome membrane;1.23175832194262e-05!GO:0006084;acetyl-CoA metabolic process;1.23175832194262e-05!GO:0051187;cofactor catabolic process;1.31535262423555e-05!GO:0005770;late endosome;1.43489032888252e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.45081805957841e-05!GO:0006334;nucleosome assembly;1.46897329456292e-05!GO:0031497;chromatin assembly;1.53881591954393e-05!GO:0031988;membrane-bound vesicle;1.71828878997217e-05!GO:0008026;ATP-dependent helicase activity;1.72761420922887e-05!GO:0050794;regulation of cellular process;1.86565870583285e-05!GO:0005525;GTP binding;1.907429715717e-05!GO:0006260;DNA replication;2.02271247722013e-05!GO:0005694;chromosome;2.11300660479675e-05!GO:0031252;leading edge;2.18254297594518e-05!GO:0004386;helicase activity;2.25574521491997e-05!GO:0005798;Golgi-associated vesicle;2.43273357719833e-05!GO:0004298;threonine endopeptidase activity;3.16601137543528e-05!GO:0006082;organic acid metabolic process;3.72117957073461e-05!GO:0050657;nucleic acid transport;3.72117957073461e-05!GO:0051236;establishment of RNA localization;3.72117957073461e-05!GO:0050658;RNA transport;3.72117957073461e-05!GO:0000323;lytic vacuole;3.72117957073461e-05!GO:0005764;lysosome;3.72117957073461e-05!GO:0005788;endoplasmic reticulum lumen;3.7825201862563e-05!GO:0008654;phospholipid biosynthetic process;3.85424935730171e-05!GO:0003899;DNA-directed RNA polymerase activity;4.08835582957201e-05!GO:0006403;RNA localization;4.08835582957201e-05!GO:0030118;clathrin coat;4.19886416682385e-05!GO:0019752;carboxylic acid metabolic process;4.28132906670108e-05!GO:0065009;regulation of a molecular function;4.34923587051367e-05!GO:0044427;chromosomal part;4.4175869708337e-05!GO:0000087;M phase of mitotic cell cycle;4.77395266980957e-05!GO:0005667;transcription factor complex;4.95608770093195e-05!GO:0016853;isomerase activity;5.30103718098681e-05!GO:0006613;cotranslational protein targeting to membrane;5.38806556570517e-05!GO:0007067;mitosis;5.61223547220355e-05!GO:0005905;coated pit;5.90691376984181e-05!GO:0048522;positive regulation of cellular process;6.33096917220722e-05!GO:0000314;organellar small ribosomal subunit;8.20115316006908e-05!GO:0005763;mitochondrial small ribosomal subunit;8.20115316006908e-05!GO:0016568;chromatin modification;8.62265178389012e-05!GO:0042802;identical protein binding;8.78084047884174e-05!GO:0008033;tRNA processing;8.80367064001866e-05!GO:0000245;spliceosome assembly;9.07326368958787e-05!GO:0031968;organelle outer membrane;0.000104922433551658!GO:0051427;hormone receptor binding;0.000113012704528897!GO:0019867;outer membrane;0.000113380536109382!GO:0033116;ER-Golgi intermediate compartment membrane;0.000114964388371411!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000116899256784082!GO:0031982;vesicle;0.000117828329420763!GO:0031410;cytoplasmic vesicle;0.000143435277001946!GO:0003697;single-stranded DNA binding;0.000146556637968166!GO:0030132;clathrin coat of coated pit;0.000152715184939081!GO:0000786;nucleosome;0.000158006058991029!GO:0019899;enzyme binding;0.000159470228626922!GO:0045786;negative regulation of progression through cell cycle;0.000161780244313574!GO:0005741;mitochondrial outer membrane;0.000166744839896628!GO:0003713;transcription coactivator activity;0.000166744839896628!GO:0043021;ribonucleoprotein binding;0.000172369813528813!GO:0048037;cofactor binding;0.000207307929831841!GO:0050662;coenzyme binding;0.000207778739361304!GO:0022403;cell cycle phase;0.000209911968952513!GO:0007243;protein kinase cascade;0.000218923273578748!GO:0007006;mitochondrial membrane organization and biogenesis;0.000220814704490308!GO:0035257;nuclear hormone receptor binding;0.000227275127530706!GO:0016310;phosphorylation;0.000234765957538955!GO:0003714;transcription corepressor activity;0.000249116515158145!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000265062485454236!GO:0003724;RNA helicase activity;0.000280812940824022!GO:0030119;AP-type membrane coat adaptor complex;0.000281299191865213!GO:0030867;rough endoplasmic reticulum membrane;0.000297166861550739!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000297214371264367!GO:0032561;guanyl ribonucleotide binding;0.000331299118497852!GO:0019001;guanyl nucleotide binding;0.000331299118497852!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000331483271970153!GO:0008610;lipid biosynthetic process;0.00034840512008553!GO:0030658;transport vesicle membrane;0.000362512128924094!GO:0000151;ubiquitin ligase complex;0.000365194514180675!GO:0006626;protein targeting to mitochondrion;0.000374933032251777!GO:0005769;early endosome;0.000388465848974346!GO:0006520;amino acid metabolic process;0.000395580692674273!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000397518149316008!GO:0005048;signal sequence binding;0.000418939704429437!GO:0030131;clathrin adaptor complex;0.000435922546677692!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000443895677379564!GO:0016564;transcription repressor activity;0.000448331261141032!GO:0043566;structure-specific DNA binding;0.000451703702925145!GO:0043065;positive regulation of apoptosis;0.000451703702925145!GO:0030176;integral to endoplasmic reticulum membrane;0.000457180696853159!GO:0031324;negative regulation of cellular metabolic process;0.000469954510225542!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000491590867567089!GO:0043068;positive regulation of programmed cell death;0.000494970591340911!GO:0043681;protein import into mitochondrion;0.000516870617004683!GO:0009967;positive regulation of signal transduction;0.00053356950101843!GO:0007264;small GTPase mediated signal transduction;0.00053410874663975!GO:0016563;transcription activator activity;0.000553499660789102!GO:0051028;mRNA transport;0.000553822862150208!GO:0016859;cis-trans isomerase activity;0.000565893087715015!GO:0006839;mitochondrial transport;0.000612207439288886!GO:0008250;oligosaccharyl transferase complex;0.000620977139911117!GO:0030125;clathrin vesicle coat;0.000631356804985832!GO:0030665;clathrin coated vesicle membrane;0.000631356804985832!GO:0030031;cell projection biogenesis;0.000635005638760383!GO:0016044;membrane organization and biogenesis;0.000653467792323016!GO:0006979;response to oxidative stress;0.000671852779240292!GO:0004576;oligosaccharyl transferase activity;0.000673970542103973!GO:0051168;nuclear export;0.000688823436691003!GO:0046474;glycerophospholipid biosynthetic process;0.000698642934558736!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000699111432779287!GO:0006891;intra-Golgi vesicle-mediated transport;0.000722561543238172!GO:0016126;sterol biosynthetic process;0.000770483089569261!GO:0030036;actin cytoskeleton organization and biogenesis;0.000863996939348714!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000873609092162543!GO:0048471;perinuclear region of cytoplasm;0.000897017949511259!GO:0015630;microtubule cytoskeleton;0.000902140078285954!GO:0015980;energy derivation by oxidation of organic compounds;0.000902140078285954!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000923934612174448!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0010210275358689!GO:0006612;protein targeting to membrane;0.00116137671127296!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118383354273387!GO:0030660;Golgi-associated vesicle membrane;0.00120703567719587!GO:0006118;electron transport;0.00121694433092198!GO:0051920;peroxiredoxin activity;0.00121694433092198!GO:0051789;response to protein stimulus;0.00125531583650275!GO:0006986;response to unfolded protein;0.00125531583650275!GO:0006414;translational elongation;0.00127401384200898!GO:0005885;Arp2/3 protein complex;0.00127584470770312!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00129778185585029!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00133711089623276!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00140262382363663!GO:0031072;heat shock protein binding;0.00140980853488888!GO:0009892;negative regulation of metabolic process;0.00150365161391979!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157409418503723!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157409418503723!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157409418503723!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00157409418503723!GO:0015399;primary active transmembrane transporter activity;0.00157409418503723!GO:0009165;nucleotide biosynthetic process;0.00170199855894712!GO:0001726;ruffle;0.00171909857246889!GO:0030880;RNA polymerase complex;0.0018272165716841!GO:0005813;centrosome;0.00185279207532735!GO:0048518;positive regulation of biological process;0.00192130862816068!GO:0051252;regulation of RNA metabolic process;0.00195147744990331!GO:0005791;rough endoplasmic reticulum;0.00203615722841012!GO:0043488;regulation of mRNA stability;0.0021063195022374!GO:0043487;regulation of RNA stability;0.0021063195022374!GO:0000049;tRNA binding;0.00219505163122021!GO:0016197;endosome transport;0.00221580204821117!GO:0030133;transport vesicle;0.00222510878556224!GO:0030663;COPI coated vesicle membrane;0.00233647105671799!GO:0030126;COPI vesicle coat;0.00233647105671799!GO:0046489;phosphoinositide biosynthetic process;0.00235199853649491!GO:0019843;rRNA binding;0.00246167021724997!GO:0008632;apoptotic program;0.00249962890382952!GO:0050790;regulation of catalytic activity;0.00251350516590302!GO:0018196;peptidyl-asparagine modification;0.00254222164066421!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00254222164066421!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00262434319553769!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00286180044666791!GO:0046467;membrane lipid biosynthetic process;0.00294473731684157!GO:0000059;protein import into nucleus, docking;0.00294473731684157!GO:0051098;regulation of binding;0.0030137499010449!GO:0006818;hydrogen transport;0.00307018650520281!GO:0050789;regulation of biological process;0.00308384943187376!GO:0015992;proton transport;0.00308755517412103!GO:0008652;amino acid biosynthetic process;0.00320286182665741!GO:0006402;mRNA catabolic process;0.00321100394854988!GO:0051329;interphase of mitotic cell cycle;0.0032562508444547!GO:0006695;cholesterol biosynthetic process;0.00338062742797478!GO:0030137;COPI-coated vesicle;0.00357384864002706!GO:0016481;negative regulation of transcription;0.00364108640364097!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00383446250221334!GO:0000428;DNA-directed RNA polymerase complex;0.00383446250221334!GO:0030659;cytoplasmic vesicle membrane;0.00385074816065787!GO:0051301;cell division;0.00385908449739353!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00388715195365679!GO:0006917;induction of apoptosis;0.00388715195365679!GO:0008186;RNA-dependent ATPase activity;0.00390298456476627!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00415588108948064!GO:0030029;actin filament-based process;0.00415588108948064!GO:0017166;vinculin binding;0.00416679698535682!GO:0000279;M phase;0.00416679698535682!GO:0048500;signal recognition particle;0.0041981340747016!GO:0006650;glycerophospholipid metabolic process;0.00441625621718384!GO:0006401;RNA catabolic process;0.00449769041331701!GO:0048468;cell development;0.00452946423924777!GO:0008092;cytoskeletal protein binding;0.00459244358453032!GO:0005684;U2-dependent spliceosome;0.00484707929685217!GO:0046483;heterocycle metabolic process;0.0052387387952683!GO:0045045;secretory pathway;0.0052387387952683!GO:0012502;induction of programmed cell death;0.00525607907088132!GO:0005815;microtubule organizing center;0.00530022752119849!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00549049376594616!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00553347134269206!GO:0044262;cellular carbohydrate metabolic process;0.00575953716614195!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00579389992036969!GO:0008139;nuclear localization sequence binding;0.00598454922723551!GO:0051287;NAD binding;0.00599999732653548!GO:0006595;polyamine metabolic process;0.00608905799478753!GO:0016791;phosphoric monoester hydrolase activity;0.00666928186087638!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00682525919464743!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00682525919464743!GO:0044255;cellular lipid metabolic process;0.00735712014648329!GO:0006733;oxidoreduction coenzyme metabolic process;0.00745411396056262!GO:0006749;glutathione metabolic process;0.00751786335916704!GO:0008637;apoptotic mitochondrial changes;0.00755314561243918!GO:0051325;interphase;0.00765605389055026!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00802880846311677!GO:0007010;cytoskeleton organization and biogenesis;0.00815809081975927!GO:0030833;regulation of actin filament polymerization;0.00820065026217642!GO:0030134;ER to Golgi transport vesicle;0.00822827882443625!GO:0048487;beta-tubulin binding;0.00835979667437686!GO:0004004;ATP-dependent RNA helicase activity;0.00859695033570051!GO:0051101;regulation of DNA binding;0.00874137291914688!GO:0035258;steroid hormone receptor binding;0.008841087830543!GO:0005774;vacuolar membrane;0.00913567377174611!GO:0030503;regulation of cell redox homeostasis;0.00935526487477717!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00965957087196185!GO:0006383;transcription from RNA polymerase III promoter;0.00974916359748277!GO:0005149;interleukin-1 receptor binding;0.00974916359748277!GO:0006509;membrane protein ectodomain proteolysis;0.00991925552553723!GO:0033619;membrane protein proteolysis;0.00991925552553723!GO:0016311;dephosphorylation;0.00998932928484067!GO:0006611;protein export from nucleus;0.0100939788068618!GO:0015631;tubulin binding;0.01027708989794!GO:0003746;translation elongation factor activity;0.0103048656286411!GO:0031529;ruffle organization and biogenesis;0.0105254952359959!GO:0045941;positive regulation of transcription;0.0105676271483074!GO:0003684;damaged DNA binding;0.0105676271483074!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0105676271483074!GO:0009166;nucleotide catabolic process;0.010609704474572!GO:0006417;regulation of translation;0.0108681427494655!GO:0043492;ATPase activity, coupled to movement of substances;0.0110354854168651!GO:0000096;sulfur amino acid metabolic process;0.011100131092203!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112790381257889!GO:0045047;protein targeting to ER;0.0112790381257889!GO:0006519;amino acid and derivative metabolic process;0.0114236051456275!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0116844596605881!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0117288432975561!GO:0016125;sterol metabolic process;0.0117686291925348!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0121167146870313!GO:0046822;regulation of nucleocytoplasmic transport;0.0122123048598267!GO:0003729;mRNA binding;0.0123438136507467!GO:0045893;positive regulation of transcription, DNA-dependent;0.0124144598330111!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0124880918629239!GO:0030027;lamellipodium;0.0126670184338582!GO:0008312;7S RNA binding;0.0127105489375351!GO:0030433;ER-associated protein catabolic process;0.0127402264940464!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0127402264940464!GO:0044433;cytoplasmic vesicle part;0.012819163200117!GO:0016741;transferase activity, transferring one-carbon groups;0.0128281483341447!GO:0051540;metal cluster binding;0.0129882869886569!GO:0051536;iron-sulfur cluster binding;0.0129882869886569!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0131883392952653!GO:0006066;alcohol metabolic process;0.0132285705915201!GO:0006506;GPI anchor biosynthetic process;0.0134082480544157!GO:0006740;NADPH regeneration;0.0135059922558249!GO:0006098;pentose-phosphate shunt;0.0135059922558249!GO:0044452;nucleolar part;0.0136974695135885!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0137418407553569!GO:0051087;chaperone binding;0.0137945821156294!GO:0008629;induction of apoptosis by intracellular signals;0.0140454878792236!GO:0048144;fibroblast proliferation;0.0140551182922618!GO:0048145;regulation of fibroblast proliferation;0.0140551182922618!GO:0008168;methyltransferase activity;0.0140844499533351!GO:0030127;COPII vesicle coat;0.0141920389979488!GO:0012507;ER to Golgi transport vesicle membrane;0.0141920389979488!GO:0006289;nucleotide-excision repair;0.0143725007299997!GO:0006497;protein amino acid lipidation;0.0143725007299997!GO:0008361;regulation of cell size;0.0143725007299997!GO:0006778;porphyrin metabolic process;0.0143725007299997!GO:0033013;tetrapyrrole metabolic process;0.0143725007299997!GO:0030128;clathrin coat of endocytic vesicle;0.0143725007299997!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0143725007299997!GO:0030122;AP-2 adaptor complex;0.0143725007299997!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0143725007299997!GO:0010257;NADH dehydrogenase complex assembly;0.0143725007299997!GO:0033108;mitochondrial respiratory chain complex assembly;0.0143725007299997!GO:0051128;regulation of cellular component organization and biogenesis;0.0147421850527475!GO:0030032;lamellipodium biogenesis;0.0147426453120884!GO:0045334;clathrin-coated endocytic vesicle;0.0147727323018971!GO:0003690;double-stranded DNA binding;0.0154262177724035!GO:0045926;negative regulation of growth;0.0155618678613326!GO:0005819;spindle;0.0157607691749641!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0157806373395528!GO:0015002;heme-copper terminal oxidase activity;0.0157806373395528!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0157806373395528!GO:0004129;cytochrome-c oxidase activity;0.0157806373395528!GO:0006779;porphyrin biosynthetic process;0.0158292595976747!GO:0033014;tetrapyrrole biosynthetic process;0.0158292595976747!GO:0043022;ribosome binding;0.0159990196030909!GO:0006354;RNA elongation;0.0161035312934179!GO:0030384;phosphoinositide metabolic process;0.0161035312934179!GO:0031272;regulation of pseudopodium formation;0.0161035312934179!GO:0031269;pseudopodium formation;0.0161035312934179!GO:0031344;regulation of cell projection organization and biogenesis;0.0161035312934179!GO:0031268;pseudopodium organization and biogenesis;0.0161035312934179!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0161035312934179!GO:0031274;positive regulation of pseudopodium formation;0.0161035312934179!GO:0006730;one-carbon compound metabolic process;0.0161255509399689!GO:0006984;ER-nuclear signaling pathway;0.0161810583810528!GO:0031301;integral to organelle membrane;0.0162784534020073!GO:0030041;actin filament polymerization;0.0162784534020073!GO:0004721;phosphoprotein phosphatase activity;0.0165449784119833!GO:0006505;GPI anchor metabolic process;0.0165856014727547!GO:0006643;membrane lipid metabolic process;0.0166658919698528!GO:0031902;late endosome membrane;0.0168882233570217!GO:0016049;cell growth;0.0169047327082607!GO:0043284;biopolymer biosynthetic process;0.0175231321740325!GO:0007265;Ras protein signal transduction;0.0182106313811163!GO:0005832;chaperonin-containing T-complex;0.0182320073300278!GO:0048146;positive regulation of fibroblast proliferation;0.0183912169262393!GO:0022890;inorganic cation transmembrane transporter activity;0.0186798165127441!GO:0006767;water-soluble vitamin metabolic process;0.0188575055707338!GO:0004680;casein kinase activity;0.0188794963868721!GO:0044437;vacuolar part;0.0188794963868721!GO:0042158;lipoprotein biosynthetic process;0.0189681997173348!GO:0004674;protein serine/threonine kinase activity;0.0189681997173348!GO:0006007;glucose catabolic process;0.0192580707182057!GO:0045792;negative regulation of cell size;0.01947380574584!GO:0055092;sterol homeostasis;0.0198532866359899!GO:0042632;cholesterol homeostasis;0.0198532866359899!GO:0004850;uridine phosphorylase activity;0.0198568864786252!GO:0016272;prefoldin complex;0.020163799438392!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0203116132290265!GO:0030308;negative regulation of cell growth;0.020409060672455!GO:0030145;manganese ion binding;0.020409060672455!GO:0005869;dynactin complex;0.0207460191390377!GO:0008243;plasminogen activator activity;0.020789796041717!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0209830351724536!GO:0003711;transcription elongation regulator activity;0.0214427845944246!GO:0006807;nitrogen compound metabolic process;0.021684576256527!GO:0001558;regulation of cell growth;0.0217975091790656!GO:0050178;phenylpyruvate tautomerase activity;0.0219170877969219!GO:0051272;positive regulation of cell motility;0.0220467737539865!GO:0040017;positive regulation of locomotion;0.0220467737539865!GO:0035035;histone acetyltransferase binding;0.0220967464997239!GO:0016363;nuclear matrix;0.0226935866339624!GO:0046519;sphingoid metabolic process;0.0229468064458485!GO:0008213;protein amino acid alkylation;0.0229956120926443!GO:0006479;protein amino acid methylation;0.0229956120926443!GO:0001836;release of cytochrome c from mitochondria;0.0233782302935459!GO:0007040;lysosome organization and biogenesis;0.0236314803068314!GO:0051539;4 iron, 4 sulfur cluster binding;0.024531501633341!GO:0012506;vesicle membrane;0.0248831959705988!GO:0006405;RNA export from nucleus;0.0255409266600403!GO:0008234;cysteine-type peptidase activity;0.0258540908781704!GO:0003756;protein disulfide isomerase activity;0.0258647029647562!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0258647029647562!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0258827227582447!GO:0005765;lysosomal membrane;0.0259734437595697!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.026431582221986!GO:0008538;proteasome activator activity;0.0266374631323091!GO:0006352;transcription initiation;0.0271401601935591!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0271880549664596!GO:0051338;regulation of transferase activity;0.0291007229111103!GO:0009303;rRNA transcription;0.029281912123592!GO:0009112;nucleobase metabolic process;0.0294759103779537!GO:0008180;signalosome;0.0294782127793027!GO:0051059;NF-kappaB binding;0.0299867310961661!GO:0046983;protein dimerization activity;0.0299867310961661!GO:0007088;regulation of mitosis;0.0301898771522097!GO:0043414;biopolymer methylation;0.0301898771522097!GO:0055088;lipid homeostasis;0.0306889855988788!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0309325133472211!GO:0012510;trans-Golgi network transport vesicle membrane;0.0309325133472211!GO:0019318;hexose metabolic process;0.0309593803612108!GO:0005637;nuclear inner membrane;0.0318486283520865!GO:0033673;negative regulation of kinase activity;0.0324544969778487!GO:0006469;negative regulation of protein kinase activity;0.0324544969778487!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0326184672773452!GO:0032507;maintenance of cellular protein localization;0.0328956441912013!GO:0046426;negative regulation of JAK-STAT cascade;0.0329571536082015!GO:0030521;androgen receptor signaling pathway;0.032978273753344!GO:0042987;amyloid precursor protein catabolic process;0.0331128741086966!GO:0007050;cell cycle arrest;0.0335472809297297!GO:0031326;regulation of cellular biosynthetic process;0.0338295138028998!GO:0045892;negative regulation of transcription, DNA-dependent;0.0338829956834052!GO:0042168;heme metabolic process;0.0338829956834052!GO:0006739;NADP metabolic process;0.0342389026551941!GO:0006629;lipid metabolic process;0.034449446229591!GO:0009308;amine metabolic process;0.0345192740518801!GO:0000287;magnesium ion binding;0.0346205843047014!GO:0051716;cellular response to stimulus;0.0354965574074879!GO:0005996;monosaccharide metabolic process;0.0358378357841908!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0359682449741544!GO:0009116;nucleoside metabolic process;0.0365753366252947!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0366096353346564!GO:0006261;DNA-dependent DNA replication;0.0366204062046602!GO:0040029;regulation of gene expression, epigenetic;0.0369199499532723!GO:0051348;negative regulation of transferase activity;0.0374029039014883!GO:0006783;heme biosynthetic process;0.0381472594046292!GO:0007033;vacuole organization and biogenesis;0.0385191501888396!GO:0006458;'de novo' protein folding;0.0385191501888396!GO:0051084;'de novo' posttranslational protein folding;0.0385191501888396!GO:0007034;vacuolar transport;0.0385191501888396!GO:0004177;aminopeptidase activity;0.0386767740076391!GO:0008426;protein kinase C inhibitor activity;0.0393921146558568!GO:0006644;phospholipid metabolic process;0.0397058032644737!GO:0000339;RNA cap binding;0.0398890029716193!GO:0008154;actin polymerization and/or depolymerization;0.0420696378582623!GO:0043189;H4/H2A histone acetyltransferase complex;0.0427326593716801!GO:0005758;mitochondrial intermembrane space;0.0431708338118439!GO:0033559;unsaturated fatty acid metabolic process;0.0435932121425431!GO:0006636;unsaturated fatty acid biosynthetic process;0.0435932121425431!GO:0048660;regulation of smooth muscle cell proliferation;0.0435932121425431!GO:0035303;regulation of dephosphorylation;0.0441742481142982!GO:0005862;muscle thin filament tropomyosin;0.0446100387838896!GO:0006672;ceramide metabolic process;0.0447452853184421!GO:0051336;regulation of hydrolase activity;0.0454975038294829!GO:0016407;acetyltransferase activity;0.0458454285572813!GO:0016251;general RNA polymerase II transcription factor activity;0.0459605435007735!GO:0032940;secretion by cell;0.0459605435007735!GO:0006596;polyamine biosynthetic process;0.0459605435007735!GO:0006516;glycoprotein catabolic process;0.0459605435007735!GO:0006904;vesicle docking during exocytosis;0.0460441178903597!GO:0006376;mRNA splice site selection;0.0476548123798508!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0476548123798508!GO:0004681;casein kinase I activity;0.0487667350524609!GO:0000209;protein polyubiquitination;0.0489449404261747!GO:0009451;RNA modification;0.0489449404261747!GO:0022406;membrane docking;0.0489599265232968!GO:0048278;vesicle docking;0.0489599265232968!GO:0045936;negative regulation of phosphate metabolic process;0.0492006589911027!GO:0031124;mRNA 3'-end processing;0.049713724727893 | |||
|sample_id=11461 | |sample_id=11461 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=TP53:2.64136570588;PPARG:2.34950630365;TBX4,5:2.19696265597;ZEB1:1.94925354267;SNAI1..3:1.86544576101;VSX1,2:1.81813576684;MYOD1:1.71583234485;ZNF148:1.54553994492;NR5A1,2:1.30266480015;POU2F1..3:1.204899181;HMX1:1.1424746453;ZNF423:1.12931586636;ONECUT1,2:1.06008204411;EBF1:1.05312598823;TFCP2:0.989272667828;CRX:0.898478245184;SP1:0.874323940079;PAX1,9:0.858025927052;XCPE1{core}:0.855745162312;GLI1..3:0.845010195239;LMO2:0.804358466897;TEAD1:0.798668004232;ELK1,4_GABP{A,B1}:0.758136483863;ADNP_IRX_SIX_ZHX:0.754561525917;GTF2A1,2:0.732351465251;IKZF1:0.731292552123;TBP:0.725224320753;ARID5B:0.6920317071;ESR1:0.668581952197;CEBPA,B_DDIT3:0.655844872078;FOS_FOS{B,L1}_JUN{B,D}:0.654155793581;HAND1,2:0.622402508974;TFAP2{A,C}:0.584200002944;BACH2:0.558156979297;RXRA_VDR{dimer}:0.535652693151;FOXM1:0.52622137019;AR:0.47841722108;MTF1:0.465864022678;ZIC1..3:0.464573385261;TFAP4:0.464073587371;RXR{A,B,G}:0.458360020143;NANOG:0.422926177996;bHLH_family:0.408148555292;FOXQ1:0.401439697232;HLF:0.385446069564;FOSL2:0.350271516904;POU1F1:0.348765652473;EP300:0.338054101116;TEF:0.303439020217;ALX4:0.301516288916;NFE2:0.28320258161;TLX1..3_NFIC{dimer}:0.236101691317;NKX2-2,8:0.215712004944;NFIL3:0.195163549634;HIF1A:0.172599015626;HES1:0.169097008831;ZBTB6:0.167506120239;PAX2:0.163780777867;UFEwm:0.13132209898;REST:0.113285784348;TLX2:0.104533898653;CDC5L:0.0890889977597;HOX{A5,B5}:0.0778854905583;ATF4:0.0585186497405;PAX8:0.0557014151599;YY1:0.041457796943;ZNF238:0.0124691190493;NKX2-3_NKX2-5:0.00703132523121;GZF1:-0.0129677954153;SMAD1..7,9:-0.0298912134424;POU6F1:-0.0347730721053;HNF4A_NR2F1,2:-0.0358048391186;STAT5{A,B}:-0.0366259624037;GFI1B:-0.0395027488789;ESRRA:-0.043202953882;NR1H4:-0.0480194665562;SOX17:-0.0635996487895;FOX{F1,F2,J1}:-0.0838793597966;NFKB1_REL_RELA:-0.0884782453132;KLF4:-0.136375000119;ELF1,2,4:-0.142558567872;SPZ1:-0.144785568615;T:-0.159632054418;ETS1,2:-0.169063639791;RBPJ:-0.171655709052;LEF1_TCF7_TCF7L1,2:-0.18099941069;NFE2L1:-0.183052767063;NKX2-1,4:-0.18519337874;LHX3,4:-0.186925698689;ZNF143:-0.208726793274;MAZ:-0.222016349224;POU5F1:-0.225898899804;MAFB:-0.229163827973;NKX3-2:-0.253317769006;TFAP2B:-0.253515009753;SOX{8,9,10}:-0.261387173383;PAX5:-0.263701062127;RREB1:-0.26789929249;HNF1A:-0.281361363254;NR3C1:-0.285347053381;SOX2:-0.289784065636;NR6A1:-0.291221543251;GATA6:-0.304459584872;NFE2L2:-0.309837967337;MED-1{core}:-0.330946627162;ATF2:-0.349069050458;SPIB:-0.362354577075;ATF5_CREB3:-0.376464169699;PBX1:-0.382643955341;GFI1:-0.420878593262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422207159556;JUN:-0.424350148757;TOPORS:-0.431886113453;STAT2,4,6:-0.43745401559;HIC1:-0.444509316782;NRF1:-0.462719358927;EN1,2:-0.467718950838;RFX1:-0.482094082642;GTF2I:-0.483558005105;PAX4:-0.484368645247;HOX{A4,D4}:-0.492893795208;NFY{A,B,C}:-0.497802294288;RFX2..5_RFXANK_RFXAP:-0.516003484283;RUNX1..3:-0.51914370325;TFDP1:-0.522224642479;RORA:-0.54183359282;SPI1:-0.545305937103;ALX1:-0.556028253715;POU3F1..4:-0.564348678712;OCT4_SOX2{dimer}:-0.56670916099;MYB:-0.594635200738;IRF7:-0.615457789616;CREB1:-0.618710903096;PDX1:-0.621675110559;AIRE:-0.625411455493;EGR1..3:-0.631873635936;MEF2{A,B,C,D}:-0.640815046781;FOXL1:-0.641490541716;GCM1,2:-0.653756482119;HOX{A6,A7,B6,B7}:-0.667924543511;SRF:-0.717975577704;ATF6:-0.72329378648;FOXN1:-0.733979591953;MYBL2:-0.742246111473;NHLH1,2:-0.74983936378;AHR_ARNT_ARNT2:-0.751396011698;NANOG{mouse}:-0.789936164879;NFIX:-0.799091354301;PATZ1:-0.803062010788;PITX1..3:-0.846071773632;ZFP161:-0.860234880283;CUX2:-0.887680930216;E2F1..5:-0.901404993402;MTE{core}:-0.918575014399;PRRX1,2:-0.934164892375;HSF1,2:-0.936199757074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.936768563992;MYFfamily:-0.95950493475;MZF1:-0.965564310116;NFATC1..3:-0.989878442326;EVI1:-0.999369189339;NKX3-1:-1.02958390472;BREu{core}:-1.04647753779;XBP1:-1.0528157374;PRDM1:-1.07316674808;CDX1,2,4:-1.13039185155;TGIF1:-1.13079696078;SOX5:-1.1599703934;FOX{D1,D2}:-1.17786876277;HOXA9_MEIS1:-1.19587876146;PAX3,7:-1.22525252503;TAL1_TCF{3,4,12}:-1.2277347948;FOXP1:-1.263304932;FOX{I1,J2}:-1.28811559388;PAX6:-1.30259933435;NKX6-1,2:-1.30552187016;DMAP1_NCOR{1,2}_SMARC:-1.33005878061;BPTF:-1.36161245585;FOXO1,3,4:-1.37668956331;SREBF1,2:-1.41051335341;ZBTB16:-1.4356780709;IRF1,2:-1.44259663671;DBP:-1.49479695238;FOXA2:-1.56211107216;FOXD3:-1.56758188306;FOXP3:-1.5987280216;ZNF384:-1.60380928621;STAT1,3:-1.6134275139;GATA4:-1.767009796;IKZF2:-1.98517950199;HMGA1,2:-2.15370547962;HBP1_HMGB_SSRP1_UBTF:-2.23426326489 | |top_motifs=TP53:2.64136570588;PPARG:2.34950630365;TBX4,5:2.19696265597;ZEB1:1.94925354267;SNAI1..3:1.86544576101;VSX1,2:1.81813576684;MYOD1:1.71583234485;ZNF148:1.54553994492;NR5A1,2:1.30266480015;POU2F1..3:1.204899181;HMX1:1.1424746453;ZNF423:1.12931586636;ONECUT1,2:1.06008204411;EBF1:1.05312598823;TFCP2:0.989272667828;CRX:0.898478245184;SP1:0.874323940079;PAX1,9:0.858025927052;XCPE1{core}:0.855745162312;GLI1..3:0.845010195239;LMO2:0.804358466897;TEAD1:0.798668004232;ELK1,4_GABP{A,B1}:0.758136483863;ADNP_IRX_SIX_ZHX:0.754561525917;GTF2A1,2:0.732351465251;IKZF1:0.731292552123;TBP:0.725224320753;ARID5B:0.6920317071;ESR1:0.668581952197;CEBPA,B_DDIT3:0.655844872078;FOS_FOS{B,L1}_JUN{B,D}:0.654155793581;HAND1,2:0.622402508974;TFAP2{A,C}:0.584200002944;BACH2:0.558156979297;RXRA_VDR{dimer}:0.535652693151;FOXM1:0.52622137019;AR:0.47841722108;MTF1:0.465864022678;ZIC1..3:0.464573385261;TFAP4:0.464073587371;RXR{A,B,G}:0.458360020143;NANOG:0.422926177996;bHLH_family:0.408148555292;FOXQ1:0.401439697232;HLF:0.385446069564;FOSL2:0.350271516904;POU1F1:0.348765652473;EP300:0.338054101116;TEF:0.303439020217;ALX4:0.301516288916;NFE2:0.28320258161;TLX1..3_NFIC{dimer}:0.236101691317;NKX2-2,8:0.215712004944;NFIL3:0.195163549634;HIF1A:0.172599015626;HES1:0.169097008831;ZBTB6:0.167506120239;PAX2:0.163780777867;UFEwm:0.13132209898;REST:0.113285784348;TLX2:0.104533898653;CDC5L:0.0890889977597;HOX{A5,B5}:0.0778854905583;ATF4:0.0585186497405;PAX8:0.0557014151599;YY1:0.041457796943;ZNF238:0.0124691190493;NKX2-3_NKX2-5:0.00703132523121;GZF1:-0.0129677954153;SMAD1..7,9:-0.0298912134424;POU6F1:-0.0347730721053;HNF4A_NR2F1,2:-0.0358048391186;STAT5{A,B}:-0.0366259624037;GFI1B:-0.0395027488789;ESRRA:-0.043202953882;NR1H4:-0.0480194665562;SOX17:-0.0635996487895;FOX{F1,F2,J1}:-0.0838793597966;NFKB1_REL_RELA:-0.0884782453132;KLF4:-0.136375000119;ELF1,2,4:-0.142558567872;SPZ1:-0.144785568615;T:-0.159632054418;ETS1,2:-0.169063639791;RBPJ:-0.171655709052;LEF1_TCF7_TCF7L1,2:-0.18099941069;NFE2L1:-0.183052767063;NKX2-1,4:-0.18519337874;LHX3,4:-0.186925698689;ZNF143:-0.208726793274;MAZ:-0.222016349224;POU5F1:-0.225898899804;MAFB:-0.229163827973;NKX3-2:-0.253317769006;TFAP2B:-0.253515009753;SOX{8,9,10}:-0.261387173383;PAX5:-0.263701062127;RREB1:-0.26789929249;HNF1A:-0.281361363254;NR3C1:-0.285347053381;SOX2:-0.289784065636;NR6A1:-0.291221543251;GATA6:-0.304459584872;NFE2L2:-0.309837967337;MED-1{core}:-0.330946627162;ATF2:-0.349069050458;SPIB:-0.362354577075;ATF5_CREB3:-0.376464169699;PBX1:-0.382643955341;GFI1:-0.420878593262;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422207159556;JUN:-0.424350148757;TOPORS:-0.431886113453;STAT2,4,6:-0.43745401559;HIC1:-0.444509316782;NRF1:-0.462719358927;EN1,2:-0.467718950838;RFX1:-0.482094082642;GTF2I:-0.483558005105;PAX4:-0.484368645247;HOX{A4,D4}:-0.492893795208;NFY{A,B,C}:-0.497802294288;RFX2..5_RFXANK_RFXAP:-0.516003484283;RUNX1..3:-0.51914370325;TFDP1:-0.522224642479;RORA:-0.54183359282;SPI1:-0.545305937103;ALX1:-0.556028253715;POU3F1..4:-0.564348678712;OCT4_SOX2{dimer}:-0.56670916099;MYB:-0.594635200738;IRF7:-0.615457789616;CREB1:-0.618710903096;PDX1:-0.621675110559;AIRE:-0.625411455493;EGR1..3:-0.631873635936;MEF2{A,B,C,D}:-0.640815046781;FOXL1:-0.641490541716;GCM1,2:-0.653756482119;HOX{A6,A7,B6,B7}:-0.667924543511;SRF:-0.717975577704;ATF6:-0.72329378648;FOXN1:-0.733979591953;MYBL2:-0.742246111473;NHLH1,2:-0.74983936378;AHR_ARNT_ARNT2:-0.751396011698;NANOG{mouse}:-0.789936164879;NFIX:-0.799091354301;PATZ1:-0.803062010788;PITX1..3:-0.846071773632;ZFP161:-0.860234880283;CUX2:-0.887680930216;E2F1..5:-0.901404993402;MTE{core}:-0.918575014399;PRRX1,2:-0.934164892375;HSF1,2:-0.936199757074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.936768563992;MYFfamily:-0.95950493475;MZF1:-0.965564310116;NFATC1..3:-0.989878442326;EVI1:-0.999369189339;NKX3-1:-1.02958390472;BREu{core}:-1.04647753779;XBP1:-1.0528157374;PRDM1:-1.07316674808;CDX1,2,4:-1.13039185155;TGIF1:-1.13079696078;SOX5:-1.1599703934;FOX{D1,D2}:-1.17786876277;HOXA9_MEIS1:-1.19587876146;PAX3,7:-1.22525252503;TAL1_TCF{3,4,12}:-1.2277347948;FOXP1:-1.263304932;FOX{I1,J2}:-1.28811559388;PAX6:-1.30259933435;NKX6-1,2:-1.30552187016;DMAP1_NCOR{1,2}_SMARC:-1.33005878061;BPTF:-1.36161245585;FOXO1,3,4:-1.37668956331;SREBF1,2:-1.41051335341;ZBTB16:-1.4356780709;IRF1,2:-1.44259663671;DBP:-1.49479695238;FOXA2:-1.56211107216;FOXD3:-1.56758188306;FOXP3:-1.5987280216;ZNF384:-1.60380928621;STAT1,3:-1.6134275139;GATA4:-1.767009796;IKZF2:-1.98517950199;HMGA1,2:-2.15370547962;HBP1_HMGB_SSRP1_UBTF:-2.23426326489 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11461-119B3;search_select_hide=table117:FF:11461-119B3 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Bronchial Epithelial Cell, donor6 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12062 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12062
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12062
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.579 |
| 10 | 10 | 0.976 |
| 100 | 100 | 0.737 |
| 101 | 101 | 0.00153 |
| 102 | 102 | 0.0949 |
| 103 | 103 | 0.151 |
| 104 | 104 | 0.392 |
| 105 | 105 | 0.0888 |
| 106 | 106 | 0.0502 |
| 107 | 107 | 0.0716 |
| 108 | 108 | 0.44 |
| 109 | 109 | 5.50129e-4 |
| 11 | 11 | 0.0631 |
| 110 | 110 | 0.0716 |
| 111 | 111 | 0.502 |
| 112 | 112 | 0.243 |
| 113 | 113 | 0.433 |
| 114 | 114 | 0.349 |
| 115 | 115 | 0.163 |
| 116 | 116 | 0.274 |
| 117 | 117 | 0.174 |
| 118 | 118 | 0.908 |
| 119 | 119 | 0.142 |
| 12 | 12 | 0.32 |
| 120 | 120 | 0.0762 |
| 121 | 121 | 0.741 |
| 122 | 122 | 0.07 |
| 123 | 123 | 0.379 |
| 124 | 124 | 0.132 |
| 125 | 125 | 0.848 |
| 126 | 126 | 0.495 |
| 127 | 127 | 0.0344 |
| 128 | 128 | 0.612 |
| 129 | 129 | 0.121 |
| 13 | 13 | 0.0349 |
| 130 | 130 | 0.773 |
| 131 | 131 | 0.427 |
| 132 | 132 | 0.489 |
| 133 | 133 | 5.7783e-4 |
| 134 | 134 | 0.189 |
| 135 | 135 | 0.976 |
| 136 | 136 | 0.0753 |
| 137 | 137 | 0.0702 |
| 138 | 138 | 0.704 |
| 139 | 139 | 0.233 |
| 14 | 14 | 0.736 |
| 140 | 140 | 0.0489 |
| 141 | 141 | 0.421 |
| 142 | 142 | 0.0492 |
| 143 | 143 | 0.508 |
| 144 | 144 | 0.233 |
| 145 | 145 | 0.368 |
| 146 | 146 | 0.00567 |
| 147 | 147 | 0.0425 |
| 148 | 148 | 0.18 |
| 149 | 149 | 0.191 |
| 15 | 15 | 0.893 |
| 150 | 150 | 0.349 |
| 151 | 151 | 0.494 |
| 152 | 152 | 0.036 |
| 153 | 153 | 0.995 |
| 154 | 154 | 0.596 |
| 155 | 155 | 0.438 |
| 156 | 156 | 0.305 |
| 157 | 157 | 0.701 |
| 158 | 158 | 0.388 |
| 159 | 159 | 0.597 |
| 16 | 16 | 0.0202 |
| 160 | 160 | 0.313 |
| 161 | 161 | 0.395 |
| 162 | 162 | 0.39 |
| 163 | 163 | 0.699 |
| 164 | 164 | 0.271 |
| 165 | 165 | 0.235 |
| 166 | 166 | 0.13 |
| 167 | 167 | 0.264 |
| 168 | 168 | 0.768 |
| 169 | 169 | 0.0502 |
| 17 | 17 | 0.14 |
| 18 | 18 | 0.0569 |
| 19 | 19 | 0.404 |
| 2 | 2 | 0.175 |
| 20 | 20 | 0.717 |
| 21 | 21 | 0.476 |
| 22 | 22 | 0.187 |
| 23 | 23 | 0.58 |
| 24 | 24 | 0.109 |
| 25 | 25 | 0.81 |
| 26 | 26 | 0.143 |
| 27 | 27 | 0.448 |
| 28 | 28 | 0.762 |
| 29 | 29 | 0.238 |
| 3 | 3 | 0.582 |
| 30 | 30 | 0.0711 |
| 31 | 31 | 0.696 |
| 32 | 32 | 0.676 |
| 33 | 33 | 0.128 |
| 34 | 34 | 0.808 |
| 35 | 35 | 0.663 |
| 36 | 36 | 0.738 |
| 37 | 37 | 0.166 |
| 38 | 38 | 0.317 |
| 39 | 39 | 0.23 |
| 4 | 4 | 0.531 |
| 40 | 40 | 0.00877 |
| 41 | 41 | 0.659 |
| 42 | 42 | 0.966 |
| 43 | 43 | 0.446 |
| 44 | 44 | 0.582 |
| 45 | 45 | 0.205 |
| 46 | 46 | 0.411 |
| 47 | 47 | 0.181 |
| 48 | 48 | 0.069 |
| 49 | 49 | 0.988 |
| 5 | 5 | 0.66 |
| 50 | 50 | 0.522 |
| 51 | 51 | 0.761 |
| 52 | 52 | 0.491 |
| 53 | 53 | 0.386 |
| 54 | 54 | 0.575 |
| 55 | 55 | 0.929 |
| 56 | 56 | 0.376 |
| 57 | 57 | 0.532 |
| 58 | 58 | 0.988 |
| 59 | 59 | 0.056 |
| 6 | 6 | 0.186 |
| 60 | 60 | 0.23 |
| 61 | 61 | 0.616 |
| 62 | 62 | 0.898 |
| 63 | 63 | 0.259 |
| 64 | 64 | 0.239 |
| 65 | 65 | 0.161 |
| 66 | 66 | 0.734 |
| 67 | 67 | 0.599 |
| 68 | 68 | 0.809 |
| 69 | 69 | 0.141 |
| 7 | 7 | 0.527 |
| 70 | 70 | 0.00644 |
| 71 | 71 | 0.262 |
| 72 | 72 | 0.956 |
| 73 | 73 | 0.0127 |
| 74 | 74 | 0.0261 |
| 75 | 75 | 0.145 |
| 76 | 76 | 0.916 |
| 77 | 77 | 0.00456 |
| 78 | 78 | 0.0568 |
| 79 | 79 | 0.544 |
| 8 | 8 | 0.246 |
| 80 | 80 | 0.984 |
| 81 | 81 | 0.585 |
| 82 | 82 | 0.681 |
| 83 | 83 | 0.513 |
| 84 | 84 | 0.899 |
| 85 | 85 | 0.492 |
| 86 | 86 | 0.785 |
| 87 | 87 | 0.00589 |
| 88 | 88 | 0.473 |
| 89 | 89 | 0.0912 |
| 9 | 9 | 0.672 |
| 90 | 90 | 0.133 |
| 91 | 91 | 0.617 |
| 92 | 92 | 0.74 |
| 93 | 93 | 0.666 |
| 94 | 94 | 0.686 |
| 95 | 95 | 0.031 |
| 96 | 96 | 0.53 |
| 97 | 97 | 0.726 |
| 98 | 98 | 0.36 |
| 99 | 99 | 0.0205 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12062
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
