FF:10813-111B3: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	normal embryonic palatal mesenchymal cell line:HEPM
Species:	Human (Homo sapiens)
Library ID:	CNhs11894
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	palate
dev stage	NA
sex	female
age	fetal
cell type	unclassifiable
cell line	HEPM
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004738

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11894		CAGE		DRX007970		DRR008842

Accession ID Hg19

Library id		BAM		CTSS
CNhs11894		DRZ000267		DRZ001652

Accession ID Hg38

Library id		BAM		CTSS
CNhs11894		DRZ011617		DRZ013002

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.00192
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.454
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.232
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.084
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0444
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.664
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.35
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.601
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0136
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0145
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.46
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.561
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.232
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.494
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.113
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0625
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.232
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.131
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.54
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.468
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.313
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.232
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.137
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.797
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11894

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.60456e-4
MA0003.1	MA0003.1	0.808
MA0004.1	MA0004.1	0.0325
MA0006.1	MA0006.1	0.983
MA0007.1	MA0007.1	0.855
MA0009.1	MA0009.1	0.227
MA0014.1	MA0014.1	0.37
MA0017.1	MA0017.1	4.50755e-4
MA0018.2	MA0018.2	0.313
MA0019.1	MA0019.1	0.829
MA0024.1	MA0024.1	0.218
MA0025.1	MA0025.1	0.0302
MA0027.1	MA0027.1	0.767
MA0028.1	MA0028.1	0.00257
MA0029.1	MA0029.1	0.944
MA0030.1	MA0030.1	0.484
MA0031.1	MA0031.1	0.028
MA0035.2	MA0035.2	0.00585
MA0038.1	MA0038.1	0.644
MA0039.2	MA0039.2	0.00176
MA0040.1	MA0040.1	0.828
MA0041.1	MA0041.1	0.561
MA0042.1	MA0042.1	0.958
MA0043.1	MA0043.1	0.406
MA0046.1	MA0046.1	0.0228
MA0047.2	MA0047.2	0.228
MA0048.1	MA0048.1	0.0217
MA0050.1	MA0050.1	7.68724e-4
MA0051.1	MA0051.1	0.0883
MA0052.1	MA0052.1	0.647
MA0055.1	MA0055.1	0.765
MA0057.1	MA0057.1	0.399
MA0058.1	MA0058.1	2.02926e-4
MA0059.1	MA0059.1	0.0165
MA0060.1	MA0060.1	0.00506
MA0061.1	MA0061.1	0.00207
MA0062.2	MA0062.2	1.07048e-10
MA0065.2	MA0065.2	0.00274
MA0066.1	MA0066.1	0.356
MA0067.1	MA0067.1	0.699
MA0068.1	MA0068.1	0.287
MA0069.1	MA0069.1	0.162
MA0070.1	MA0070.1	0.525
MA0071.1	MA0071.1	0.469
MA0072.1	MA0072.1	0.449
MA0073.1	MA0073.1	0.547
MA0074.1	MA0074.1	0.403
MA0076.1	MA0076.1	0.00182
MA0077.1	MA0077.1	0.355
MA0078.1	MA0078.1	0.806
MA0079.2	MA0079.2	0.283
MA0080.2	MA0080.2	5.18637e-11
MA0081.1	MA0081.1	0.0148
MA0083.1	MA0083.1	0.0184
MA0084.1	MA0084.1	0.149
MA0087.1	MA0087.1	0.897
MA0088.1	MA0088.1	0.051
MA0090.1	MA0090.1	0.0119
MA0091.1	MA0091.1	0.117
MA0092.1	MA0092.1	0.759
MA0093.1	MA0093.1	0.0275
MA0099.2	MA0099.2	1.57952e-5
MA0100.1	MA0100.1	0.841
MA0101.1	MA0101.1	2.05747e-4
MA0102.2	MA0102.2	0.379
MA0103.1	MA0103.1	0.00392
MA0104.2	MA0104.2	2.30987e-4
MA0105.1	MA0105.1	0.0661
MA0106.1	MA0106.1	0.751
MA0107.1	MA0107.1	2.29844e-4
MA0108.2	MA0108.2	0.102
MA0111.1	MA0111.1	0.622
MA0112.2	MA0112.2	0.684
MA0113.1	MA0113.1	0.69
MA0114.1	MA0114.1	6.35056e-4
MA0115.1	MA0115.1	0.0304
MA0116.1	MA0116.1	0.0909
MA0117.1	MA0117.1	0.447
MA0119.1	MA0119.1	0.484
MA0122.1	MA0122.1	0.0374
MA0124.1	MA0124.1	0.0274
MA0125.1	MA0125.1	0.398
MA0131.1	MA0131.1	0.767
MA0135.1	MA0135.1	0.428
MA0136.1	MA0136.1	3.74997e-15
MA0137.2	MA0137.2	0.25
MA0138.2	MA0138.2	0.437
MA0139.1	MA0139.1	0.486
MA0140.1	MA0140.1	0.0486
MA0141.1	MA0141.1	0.28
MA0142.1	MA0142.1	0.0618
MA0143.1	MA0143.1	0.794
MA0144.1	MA0144.1	0.344
MA0145.1	MA0145.1	0.933
MA0146.1	MA0146.1	0.177
MA0147.1	MA0147.1	0.00134
MA0148.1	MA0148.1	0.184
MA0149.1	MA0149.1	0.288
MA0150.1	MA0150.1	5.29199e-4
MA0152.1	MA0152.1	0.0151
MA0153.1	MA0153.1	0.578
MA0154.1	MA0154.1	0.0572
MA0155.1	MA0155.1	0.0654
MA0156.1	MA0156.1	1.15354e-12
MA0157.1	MA0157.1	0.145
MA0159.1	MA0159.1	0.172
MA0160.1	MA0160.1	0.059
MA0162.1	MA0162.1	0.269
MA0163.1	MA0163.1	0.549
MA0164.1	MA0164.1	0.941
MA0258.1	MA0258.1	0.515
MA0259.1	MA0259.1	0.433

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11894

Novel motif	Logo	P-value
1	1	0.219
10	10	0.667
100	100	0.754
101	101	0.73
102	102	0.338
103	103	0.36
104	104	0.846
105	105	0.262
106	106	0.482
107	107	0.418
108	108	0.737
109	109	0.234
11	11	0.911
110	110	0.509
111	111	0.214
112	112	0.678
113	113	0.557
114	114	0.631
115	115	2.33578e-4
116	116	0.355
117	117	0.244
118	118	0.694
119	119	0.287
12	12	0.262
120	120	0.271
121	121	0.396
122	122	0.0126
123	123	0.0496
124	124	0.631
125	125	0.399
126	126	0.294
127	127	0.477
128	128	0.604
129	129	0.18
13	13	0.247
130	130	0.879
131	131	0.891
132	132	0.032
133	133	0.812
134	134	0.177
135	135	0.0779
136	136	0.732
137	137	0.119
138	138	0.539
139	139	0.364
14	14	0.107
140	140	0.0941
141	141	0.291
142	142	0.271
143	143	0.596
144	144	0.231
145	145	0.576
146	146	0.145
147	147	0.239
148	148	0.152
149	149	0.313
15	15	0.0594
150	150	0.581
151	151	0.274
152	152	0.037
153	153	0.614
154	154	0.814
155	155	0.731
156	156	0.33
157	157	0.319
158	158	0.0211
159	159	0.603
16	16	0.169
160	160	0.915
161	161	0.575
162	162	0.918
163	163	0.225
164	164	0.526
165	165	0.245
166	166	0.017
167	167	0.631
168	168	0.171
169	169	0.482
17	17	0.635
18	18	0.983
19	19	0.0214
2	2	0.998
20	20	0.809
21	21	0.634
22	22	0.766
23	23	0.611
24	24	0.215
25	25	0.188
26	26	0.658
27	27	0.57
28	28	0.213
29	29	0.609
3	3	0.392
30	30	0.901
31	31	0.74
32	32	9.46976e-17
33	33	1
34	34	0.209
35	35	0.619
36	36	0.0747
37	37	0.426
38	38	0.151
39	39	0.736
4	4	0.299
40	40	0.0289
41	41	0.149
42	42	0.324
43	43	0.393
44	44	0.192
45	45	0.255
46	46	0.649
47	47	0.175
48	48	0.512
49	49	0.175
5	5	0.489
50	50	0.938
51	51	0.59
52	52	0.831
53	53	0.123
54	54	0.995
55	55	0.271
56	56	0.541
57	57	0.549
58	58	0.0815
59	59	0.991
6	6	0.507
60	60	0.58
61	61	0.549
62	62	0.252
63	63	0.945
64	64	0.847
65	65	0.825
66	66	0.0704
67	67	0.485
68	68	0.957
69	69	0.623
7	7	0.13
70	70	0.298
71	71	0.395
72	72	0.662
73	73	0.324
74	74	0.971
75	75	0.382
76	76	0.998
77	77	0.898
78	78	0.0345
79	79	0.00717
8	8	0.556
80	80	0.0491
81	81	0.961
82	82	0.776
83	83	0.389
84	84	0.96
85	85	0.318
86	86	0.751
87	87	0.84
88	88	0.477
89	89	0.557
9	9	0.738
90	90	0.304
91	91	0.967
92	92	0.804
93	93	0.418
94	94	0.791
95	95	0.967
96	96	0.952
97	97	0.682
98	98	0.0614
99	99	0.165

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11894

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000134 mesenchymal cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0005705 primary palate mesenchyme

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001474 (bone element)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0005705 (primary palate mesenchyme)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0008193 (pneumatized bone)
0001708 (jaw skeleton)
0010912 (subdivision of skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002514 (intramembranous bone)
0003457 (head bone)
0008907 (dermal bone)
0008001 (irregular bone)
0007213 (mesenchyme derived from head neural crest)
0009891 (facial mesenchyme)
0003104 (mesenchyme)
0007914 (head or neck bone)
0010317 (germ layer / neural crest derived structure)
0007375 (roof of mouth)
0003323 (mesenchyme of upper jaw)
0010258 (mesenchyme from rhombencephalic neural crest)
0005253 (head mesenchyme)
0007842 (membrane bone)
0004089 (midface)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0001456 (face)
0008895 (splanchnocranium)
0002397 (maxilla)
0003113 (dermatocranium)
0011137 (axial skeletal system)
0003277 (skeleton of upper jaw)
0009142 (entire embryonic mesenchyme)
0010323 (cranial skeletal system)
0001709 (upper jaw region)
0002244 (premaxilla)
0005620 (primary palate)
0010364 (dermal skeleton)
0004288 (skeleton)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005062 (neural fold)
UBERON:0007284 (presumptive neural plate)
UBERON:0003099 (cranial neural crest)
UBERON:0003852 (rhombencephalon neural crest)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002100,UBERON:0001474,UBERON:0002384,UBERON:0000033,UBERON:0000926,UBERON:0000479,UBERON:0005705,UBERON:0000062,UBERON:0000475,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001444,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0000075,UBERON:0008193,UBERON:0001708,UBERON:0003104,UBERON:0002514,UBERON:0003462,UBERON:0000914,UBERON:0008001,UBERON:0010188,UBERON:0005256,UBERON:0007914,UBERON:0003457,UBERON:0006598,UBERON:0009292,UBERON:0002539,UBERON:0007375,UBERON:0003323,UBERON:0002532,UBERON:0002329,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0002090,UBERON:0001456,UBERON:0003129,UBERON:0001704,UBERON:0005944,UBERON:0002397,UBERON:0001709,UBERON:0008814,UBERON:0008816,UBERON:0003077,UBERON:0009142,UBERON:0004066,UBERON:0002244,UBERON:0005620,UBERON:0004288,UBERON:0006603,UBERON:0003089,UBERON:0004068,UBERON:0003059,UBERON:0004362,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00004738
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
+|accession_numbers=CAGE;DRX007970;DRR008842;DRZ000267;DRZ001652;DRZ011617;DRZ013002
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001474,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0005705,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0008193,UBERON:0001708,UBERON:0010912,UBERON:0011159,UBERON:0002514,UBERON:0003457,UBERON:0008907,UBERON:0008001,UBERON:0007213,UBERON:0009891,UBERON:0003104,UBERON:0007914,UBERON:0010317,UBERON:0007375,UBERON:0003323,UBERON:0010258,UBERON:0005253,UBERON:0007842,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0001456,UBERON:0008895,UBERON:0002397,UBERON:0003113,UBERON:0011137,UBERON:0003277,UBERON:0009142,UBERON:0010323,UBERON:0001709,UBERON:0002244,UBERON:0005620,UBERON:0010364,UBERON:0004288
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!2.22!433.44!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!2.19!172.11!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!2.09!150.95!FOXF1;;chr12:52445218..52445237,+!p1@NR4A1!1.81!761.07!NR4A1;;chr10:28034739..28034756,-!p1@MKX!1.80!62.07!MKX;;chr2:157189180..157189290,-!p1@NR4A2!1.77!284.96!NR4A2;;chr9:102584159..102584174,+!p2@NR4A3!1.77!101.57!NR4A3;;chr14:61116183..61116208,-!p1@SIX1!1.76!204.90!SIX1;;chr9:132427883..132427951,+!p2@PRRX2!1.76!57.13!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.75!74.77!FOXF2;;chr9:132427972..132428056,+!p1@PRRX2!1.74!69.12!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.73!71.59!PRRX1;;chr12:85673868..85673881,+!p2@ALX1!1.71!50.79!ALX1;;chr1:170632477..170632506,+!p6@PRRX1!1.66!44.79!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.60!38.79!SIX2;;chr19:45971246..45971265,+!p1@FOSB!1.59!669.73!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!56.43!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr14:37131058..37131139,+!p1@PAX9!1.52!32.09!PAX9;;chr6:134210243..134210257,+!p1@TCF21!1.52!31.74!TCF21;;chr9:102584262..102584276,+!p1@NR4A3!1.50!66.66!NR4A3;;chr12:115122318..115122331,-!p2@TBX3!1.50!30.68!TBX3;;chr3:157824202..157824211,-!p3@SHOX2!1.48!28.92!SHOX2;;chr15:57511609..57511651,+!p2@TCF12!1.44!44.08!TCF12;;chr12:85674018..85674039,+!p3@ALX1!1.44!26.45!ALX1;;chr5:321810..321877,+!p1@AHRR!1.42!77.59!AHRR;;chr14:75745523..75745537,+!p1@FOS!1.41!2803.77!FOS;;chr20:50179368..50179392,-!p2@NFATC2!1.39!30.33!NFATC2;;chr3:157824001..157824078,-!p2@SHOX2!1.39!23.63!SHOX2;;chr2:200322654..200322707,-!p2@SATB2!1.38!33.15!SATB2;;chr4:81118647..81118666,+!p1@PRDM8!1.38!29.98!PRDM8;;chr5:137804484..137804498,+!p2@EGR1!1.35!83.94!EGR1;;chr1:170633262..170633285,+!p3@PRRX1!1.35!24.33!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.35!22.57!GLIS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!105.45!CREB3L1;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.86!TFAP2A;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.22!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!1.33!20.46!ALX1;;chr15:37392724..37392757,-!p1@MEIS2!1.32!89.23!MEIS2;;chr2:172967621..172967637,-!p1@DLX2!1.32!52.20!DLX2;;chr1:170632439..170632465,+!p11@PRRX1!1.32!20.10!PRRX1;;chr12:115122303..115122314,-!p6@TBX3!1.31!19.40!TBX3;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.28!PAX3;;chr6:126240442..126240459,+!p4@NCOA7!1.24!20.81!NCOA7;;chr1:170632723..170632739,+!p8@PRRX1!1.24!16.58!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!1.24!16.22!PRRX1;;chr9:96717629..96717644,-!p1@BARX1!1.23!15.87!BARX1;;chr8:49833948..49833973,-!p2@SNAI2!1.22!96.63!SNAI2;;chr9:102584241..102584261,+!p4@NR4A3!1.21!23.63!NR4A3;;chr19:54058073..54058088,+!p1@ZNF331!1.21!15.17!ZNF331;;chr15:37392616..37392638,-!p2@MEIS2!1.20!45.85!MEIS2;;chr8:99956662..99956684,+!p1@OSR2!1.20!22.92!OSR2;;chr6:10412392..10412409,-!p4@TFAP2A!1.20!16.93!TFAP2A;;chr2:45236579..45236596,-!p2@SIX2!1.20!14.81!SIX2;;chr1:75600067..75600094,+!p2@LHX8!1.19!14.46!LHX8;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.11!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!1.18!14.11!DLX2;;chr7:28448965..28448994,+!p2@CREB5!1.16!46.91!CREB5;;chr8:60031934..60031986,-!p6@TOX!1.16!13.40!TOX;;chr11:44331576..44331650,-!p1@ALX4!1.16!13.40!ALX4;;chr14:61116168..61116180,-!p2@SIX1!1.15!15.17!SIX1;;chr14:61125184..61125196,-!p8@SIX1!1.14!12.70!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.70!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!1.14!12.70!DLX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.17!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!1.11!261.33!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!1.11!244.05!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.62!FOXC2;;chr14:24837368..24837401,+!p1@NFATC4!1.11!27.86!NFATC4;;chr3:157823517..157823562,-!p1@SHOX2!1.11!12.70!SHOX2;;chr3:193853927..193853944,+!p1@HES1!1.10!378.07!HES1;;chr6:126240380..126240430,+!p2@NCOA7!1.10!30.33!NCOA7;;chr15:42749722..42749739,-!p2@ZFP106!1.10!20.81!ZFP106;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.86!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.10!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.75!TFAP2C;;chr1:170632683..170632696,+!p12@PRRX1!1.06!10.58!PRRX1;;chr2:100721881..100721904,-!p6@AFF3!1.06!10.58!AFF3;;chr19:13134772..13134822,+!p2@NFIX!1.04!14.81!NFIX;;chr14:75746722..75746777,+!p2@FOS!1.04!12.70!FOS;;chr7:14028488..14028516,-!p2@ETV1!1.04!10.93!ETV1;;chr19:54041669..54041697,+!p2@ZNF331!1.04!9.87!ZNF331;;chr5:72744594..72744609,-!p1@FOXD1!1.03!45.50!FOXD1;;chr20:48599506..48599526,+!p1@SNAI1!1.02!62.42!SNAI1;;chr15:37392703..37392717,-!p8@MEIS2!1.02!13.40!MEIS2;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.52!SOX11;;chr9:124991204..124991246,-!p1@LHX6!1.02!9.52!LHX6;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.50!ZFHX4;;chr6:1389824..1389840,+!p3@FOXF2!1.01!9.17!FOXF2;;chr6:19837592..19837621,+!p1@ID4!1.00!55.72!ID4;;chr4:4861385..4861398,+!p1@MSX1!1.00!27.51!MSX1;;chr8:60031809..60031835,-!p4@TOX!1.00!11.64!TOX;;chr12:115121962.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+|ffid_belonging_in_development=CL:0000134,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0003104,UBERON:0005062,UBERON:0007284,UBERON:0003099,UBERON:0003852,UBERON:0010316
 |fonse_cell_line=FF:0100669
 |fonse_cell_line_closure=FF:0100669
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10813-111B3
 |is_a=CL:0000134;;EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0005705
 |is_obsolete=
+|library_id=CNhs11894
+|library_id_phase_based=2:CNhs11894
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10813
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10813
 |name=normal embryonic palatal mesenchymal cell line:HEPM
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11894,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=14.73552
 |sample_age=fetal
+|sample_category=cell lines
 |sample_cell_catalog=jcrb9095
 |sample_cell_line=HEPM
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10813-111B3;search_select_hide=table117:FF:10813-111B3
 }}

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FF:10813-111B3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0