FFCP PHASE1:Hg19::chr3:45838011..45838034,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:45838011..45838034,-
|short_description=p2@SLC6A20
|description=CAGE_peak_2_at_SLC6A20_5end
|association_with_transcript=0bp_to_ENST00000358525,ENST0000041...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54716 | |EntrezGene=54716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |HGNC=30927 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP91,C9JIN6 | |UniProt=Q9NP91,C9JIN6 | ||
|association_with_transcript=0bp_to_ENST00000358525,ENST00000413781,NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | |||
|cluster_id=chr3:45838011..45838034,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_2_at_SLC6A20_5end | |||
|id=chr3:45838011..45838034,- | |||
|ontology_enrichment_celltype=CL:0002586!9.15e-08!3;CL:0000239!3.85e-07!3;CL:1000615!3.85e-07!3;CL:0002306!3.85e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002586;4.48e-18;3!CL:0000149;1.08e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.34e-18,3;CL:0000149,1.23e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.58e-09;3!UBERON:0006242;2.75e-07;1!UBERON:0005425;2.75e-07;1!UBERON:0010115;4.43e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;4.43e-07;1!DOID:3603;4.43e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,3.82e-07,1;DOID:3603,3.82e-07,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002108;2.59e-19;4!UBERON:0000966;3.67e-19;5!UBERON:0005388;3.67e-19;5!UBERON:0001802;3.67e-19;5!UBERON:0001781;4.48e-18;3!UBERON:0001782;4.48e-18;3!UBERON:0001896;9.78e-18;3!UBERON:0005290;9.78e-18;3!UBERON:0002360;7.76e-13;2!UBERON:0000094;7.76e-13;2!UBERON:0010743;7.76e-13;2!UBERON:0005162;1.07e-12;2!UBERON:0000122;1.07e-12;2!UBERON:0001905;3.05e-12;2!UBERON:0002757;3.05e-12;2!UBERON:0010134;3.05e-12;2!UBERON:0005408;3.05e-12;2!UBERON:0001899;3.05e-12;2!UBERON:0000160;1.92e-11;17!UBERON:0002104;1.47e-09;21!UBERON:0002298;3.98e-09;6!UBERON:0005409;7.99e-09;22!UBERON:0002114;1.21e-08;2!UBERON:0001032;2.73e-08;24!UBERON:0004456;2.73e-08;24!UBERON:0000941;2.75e-07;1!UBERON:0001785;2.75e-07;1!UBERON:0002464;2.75e-07;1!UBERON:0004904;2.75e-07;1!UBERON:0001021;2.75e-07;1!UBERON:0004732;2.93e-07;13!UBERON:0000970;3.81e-07;20!UBERON:0002363;4.43e-07;1!UBERON:0002336;4.43e-07;1!UBERON:0011215;4.43e-07;1!UBERON:0001018;4.43e-07;1!UBERON:0002473;4.43e-07;1!UBERON:0005340;4.43e-07;1!UBERON:0003544;4.43e-07;1!UBERON:0005970;4.43e-07;1!UBERON:0002316;4.43e-07;1!UBERON:0001020;4.43e-07;1!UBERON:0002437;4.43e-07;1!UBERON:0005795;7.95e-07;1!UBERON:0003112;7.95e-07;1!UBERON:0001301;7.95e-07;1!UBERON:0011158;7.95e-07;1!UBERON:0003128;7.95e-07;1!UBERON:0001703;7.95e-07;1!UBERON:0002241;7.95e-07;1 | |||
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| ||
|short_description=p2@SLC6A20 | |||
}} | }} |
Latest revision as of 09:23, 18 September 2015
Short description: | p2@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC6A20_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000358525, ENST00000413781, NM_020208, NM_022405, uc011bai.1, uc011baj.1_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | Q9NP91C9JIN6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.34e-18 | 3 |
visual pigment cell | 1.23e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 3.82e-07 | 1 |
mucinous cystadenocarcinoma | 3.82e-07 | 1 |