FF:10418-106C4: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	transitional-cell carcinoma cell line:5637
Species:	Human (Homo sapiens)
Library ID:	CNhs10735
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	68 year old adult
sex	male
age	68
cell type	unclassifiable
cell line	5637
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005781

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10735		CAGE		DRX008028		DRR008900

Accession ID Hg19

Library id		BAM		CTSS
CNhs10735		DRZ000325		DRZ001710

Accession ID Hg38

Library id		BAM		CTSS
CNhs10735		DRZ011675		DRZ013060

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0715
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.581
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.034
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.034
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.173
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0673
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0577
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.034
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.253
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.594
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.034
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.361
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.034
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.034
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00316
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.505
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.034
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.034
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10735

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.93003e-4
MA0003.1	MA0003.1	0.134
MA0004.1	MA0004.1	0.949
MA0006.1	MA0006.1	0.902
MA0007.1	MA0007.1	0.272
MA0009.1	MA0009.1	0.503
MA0014.1	MA0014.1	0.431
MA0017.1	MA0017.1	0.136
MA0018.2	MA0018.2	0.14
MA0019.1	MA0019.1	0.904
MA0024.1	MA0024.1	1.64207e-6
MA0025.1	MA0025.1	0.262
MA0027.1	MA0027.1	0.507
MA0028.1	MA0028.1	0.0176
MA0029.1	MA0029.1	0.839
MA0030.1	MA0030.1	0.204
MA0031.1	MA0031.1	0.939
MA0035.2	MA0035.2	0.959
MA0038.1	MA0038.1	5.2855e-4
MA0039.2	MA0039.2	0.39
MA0040.1	MA0040.1	0.74
MA0041.1	MA0041.1	0.655
MA0042.1	MA0042.1	0.307
MA0043.1	MA0043.1	0.0186
MA0046.1	MA0046.1	0.987
MA0047.2	MA0047.2	0.469
MA0048.1	MA0048.1	0.573
MA0050.1	MA0050.1	0.792
MA0051.1	MA0051.1	0.415
MA0052.1	MA0052.1	0.605
MA0055.1	MA0055.1	0.0257
MA0057.1	MA0057.1	0.952
MA0058.1	MA0058.1	0.912
MA0059.1	MA0059.1	0.505
MA0060.1	MA0060.1	1.92872e-10
MA0061.1	MA0061.1	0.478
MA0062.2	MA0062.2	0.0104
MA0065.2	MA0065.2	0.0763
MA0066.1	MA0066.1	0.0317
MA0067.1	MA0067.1	0.461
MA0068.1	MA0068.1	0.774
MA0069.1	MA0069.1	0.563
MA0070.1	MA0070.1	0.199
MA0071.1	MA0071.1	0.196
MA0072.1	MA0072.1	0.651
MA0073.1	MA0073.1	0.918
MA0074.1	MA0074.1	0.5
MA0076.1	MA0076.1	0.0083
MA0077.1	MA0077.1	0.0376
MA0078.1	MA0078.1	0.86
MA0079.2	MA0079.2	0.845
MA0080.2	MA0080.2	0.0214
MA0081.1	MA0081.1	0.195
MA0083.1	MA0083.1	0.137
MA0084.1	MA0084.1	0.351
MA0087.1	MA0087.1	0.329
MA0088.1	MA0088.1	0.299
MA0090.1	MA0090.1	0.149
MA0091.1	MA0091.1	0.00212
MA0092.1	MA0092.1	0.276
MA0093.1	MA0093.1	0.964
MA0099.2	MA0099.2	0.106
MA0100.1	MA0100.1	0.583
MA0101.1	MA0101.1	0.27
MA0102.2	MA0102.2	0.517
MA0103.1	MA0103.1	0.0467
MA0104.2	MA0104.2	0.924
MA0105.1	MA0105.1	0.00146
MA0106.1	MA0106.1	0.302
MA0107.1	MA0107.1	0.324
MA0108.2	MA0108.2	0.00165
MA0111.1	MA0111.1	0.653
MA0112.2	MA0112.2	1.66475e-4
MA0113.1	MA0113.1	0.0338
MA0114.1	MA0114.1	0.51
MA0115.1	MA0115.1	0.854
MA0116.1	MA0116.1	5.66215e-4
MA0117.1	MA0117.1	0.437
MA0119.1	MA0119.1	0.21
MA0122.1	MA0122.1	0.693
MA0124.1	MA0124.1	0.683
MA0125.1	MA0125.1	0.00765
MA0131.1	MA0131.1	0.306
MA0135.1	MA0135.1	0.694
MA0136.1	MA0136.1	0.812
MA0137.2	MA0137.2	0.912
MA0138.2	MA0138.2	0.0105
MA0139.1	MA0139.1	0.345
MA0140.1	MA0140.1	0.457
MA0141.1	MA0141.1	0.0159
MA0142.1	MA0142.1	0.362
MA0143.1	MA0143.1	0.967
MA0144.1	MA0144.1	0.468
MA0145.1	MA0145.1	0.193
MA0146.1	MA0146.1	0.0473
MA0147.1	MA0147.1	0.901
MA0148.1	MA0148.1	0.957
MA0149.1	MA0149.1	0.94
MA0150.1	MA0150.1	0.138
MA0152.1	MA0152.1	0.525
MA0153.1	MA0153.1	0.861
MA0154.1	MA0154.1	0.0153
MA0155.1	MA0155.1	0.0988
MA0156.1	MA0156.1	0.307
MA0157.1	MA0157.1	0.5
MA0159.1	MA0159.1	0.304
MA0160.1	MA0160.1	0.342
MA0162.1	MA0162.1	0.472
MA0163.1	MA0163.1	4.3509e-7
MA0164.1	MA0164.1	0.655
MA0258.1	MA0258.1	0.0012
MA0259.1	MA0259.1	0.833

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10735

Novel motif	Logo	P-value
1	1	0.0423
10	10	0.312
100	100	0.801
101	101	0.255
102	102	0.969
103	103	0.136
104	104	0.895
105	105	0.419
106	106	0.0492
107	107	0.363
108	108	0.698
109	109	0.3
11	11	0.0206
110	110	0.407
111	111	0.704
112	112	0.0196
113	113	0.699
114	114	0.0197
115	115	0.652
116	116	0.225
117	117	0.243
118	118	0.216
119	119	0.054
12	12	0.878
120	120	0.59
121	121	0.498
122	122	0.819
123	123	0.184
124	124	0.0803
125	125	0.824
126	126	0.561
127	127	0.449
128	128	0.0107
129	129	0.79
13	13	0.977
130	130	0.445
131	131	0.146
132	132	0.922
133	133	0.0168
134	134	0.27
135	135	0.0205
136	136	0.279
137	137	0.0719
138	138	0.141
139	139	0.0019
14	14	0.963
140	140	0.659
141	141	0.299
142	142	0.486
143	143	0.00634
144	144	0.0341
145	145	0.195
146	146	0.747
147	147	0.67
148	148	0.216
149	149	0.00546
15	15	0.165
150	150	0.87
151	151	0.452
152	152	0.162
153	153	0.576
154	154	0.774
155	155	0.651
156	156	0.911
157	157	0.769
158	158	0.83
159	159	0.332
16	16	0.271
160	160	0.253
161	161	0.755
162	162	0.571
163	163	0.568
164	164	0.124
165	165	0.961
166	166	0.403
167	167	0.644
168	168	0.966
169	169	0.0113
17	17	0.166
18	18	0.0687
19	19	0.0458
2	2	0.69
20	20	0.403
21	21	0.374
22	22	0.091
23	23	0.103
24	24	0.812
25	25	0.631
26	26	0.337
27	27	0.184
28	28	0.852
29	29	0.319
3	3	0.034
30	30	0.908
31	31	0.228
32	32	0.00121
33	33	0.752
34	34	0.418
35	35	0.0695
36	36	0.574
37	37	0.0609
38	38	0.417
39	39	0.848
4	4	0.576
40	40	0.845
41	41	0.201
42	42	0.252
43	43	0.0655
44	44	0.0472
45	45	0.82
46	46	0.0458
47	47	0.176
48	48	0.217
49	49	0.124
5	5	0.164
50	50	0.77
51	51	0.266
52	52	0.711
53	53	0.423
54	54	0.178
55	55	0.562
56	56	0.658
57	57	0.512
58	58	0.297
59	59	0.0235
6	6	0.508
60	60	0.211
61	61	0.602
62	62	0.048
63	63	0.427
64	64	0.258
65	65	0.103
66	66	0.272
67	67	0.375
68	68	0.0283
69	69	0.283
7	7	0.661
70	70	0.0146
71	71	0.172
72	72	0.191
73	73	0.0794
74	74	0.251
75	75	0.113
76	76	0.943
77	77	0.22
78	78	1
79	79	2.55589e-4
8	8	0.0344
80	80	0.29
81	81	0.0553
82	82	6.17331e-4
83	83	0.514
84	84	0.771
85	85	0.00139
86	86	0.167
87	87	0.915
88	88	0.614
89	89	0.0515
9	9	0.325
90	90	0.305
91	91	0.589
92	92	0.0621
93	93	0.874
94	94	0.00405
95	95	0.584
96	96	0.00717
97	97	0.535
98	98	0.0823
99	99	0.972

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10735

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103137 5637 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
1001319 (bladder cell)
1000600 (lower urinary tract cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001255 (urinary bladder)
0002100 (trunk)
0000483 (epithelium)
0004645 (urinary bladder urothelium)
0005910 (transitional epithelium)
0000479 (tissue)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0002323 (body cavity)
0000489 (cavitated compound organ)
0003350 (epithelium of mucosa)
0005177 (trunk region element)
0000486 (multilaminar epithelium)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001556 (lower urinary tract)
0001008 (renal system)
0001256 (wall of urinary bladder)
0001259 (mucosa of urinary bladder)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102868 (bladder transitional cell carcinoma cell line sample)
0100792 (urinary bladder cancer cell line sample)
0102869 (transitional cell carcinoma cell line sample)
0103137 (5637 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007921
+|DRA_sample_Accession=CAGE@SAMD00005781
-|accession_numbers=CAGE;DRX008028;DRR008900;DRZ000325;DRZ001710
+|accession_numbers=CAGE;DRX008028;DRR008900;DRZ000325;DRZ001710;DRZ011675;DRZ013060
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001255,UBERON:0002100,UBERON:0000483,UBERON:0004645,UBERON:0005910,UBERON:0000479,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0004923,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0002323,UBERON:0000489,UBERON:0003350,UBERON:0005177,UBERON:0000486,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0000365,UBERON:0001556,UBERON:0001008,UBERON:0001256,UBERON:0001259
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:1001319,CL:1000600
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.47!296.47!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.09!193.50!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!1.93!83.19!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.86!79.29!IRF6;;chr6:20402102..20402152,+!p1@E2F3!1.67!179.09!E2F3;;chr2:176969228..176969260,+!p1@HOXD11!1.63!41.84!HOXD11;;chr8:10588010..10588030,-!p1@SOX7!1.63!41.76!SOX7;;chr3:12330560..12330579,+!p1@PPARG!1.62!46.81!PPARG;;chr11:34642656..34642667,+!p2@EHF!1.62!40.38!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.56!359.48!KLF5;;chr3:189507432..189507459,+!p1@TP63!1.55!34.68!TP63;;chr1:201979703..201979721,+!p2@ELF3!1.55!34.68!ELF3;;chr1:209979411..209979433,-!p2@IRF6!1.54!33.62!IRF6;;chr6:126240380..126240430,+!p2@NCOA7!1.51!78.72!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.60!DLX2;;chr7:96654133..96654150,-!p1@DLX5!1.46!28.00!DLX5;;chr8:102504651..102504683,+!p1@GRHL2!1.45!27.35!GRHL2;;chr2:176969179..176969226,+!p2@HOXD11!1.45!27.03!HOXD11;;chr6:126240442..126240459,+!p4@NCOA7!1.39!29.87!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.37!78.96!RUNX1;;chr17:46703687..46703740,-!p1@HOXB9!1.37!22.22!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.35!21.49!HOXB6;;chr5:134369905..134369972,-!p1@PITX1!1.33!31.34!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.33!20.19!HOXA9;;chr3:111314186..111314204,-!p1@ZBED2!1.32!19.94!ZBED2;;chr6:126240356..126240379,+!p7@NCOA7!1.31!23.69!NCOA7;;chr3:181429704..181429722,+!p1@SOX2!1.31!19.62!SOX2;;chr6:20403916..20403965,+!p3@E2F3!1.30!82.87!E2F3;;chr7:27192185..27192209,-!p1@HOXA3!1.29!18.32!HOXA3;;chr6:21597765..21597779,+!p2@SOX4!1.27!138.96!SOX4;;chr3:169381420..169381535,-!p1@MECOM!1.26!20.27!MECOM;;chr7:27205106..27205134,-!p2@HOXA9!1.25!16.61!HOXA9;;chr6:126240463..126240489,+!p6@NCOA7!1.23!17.83!NCOA7;;chr11:129245526..129245553,+!p1@BARX2!1.23!15.96!BARX2;;chr5:134369879..134369898,-!p2@PITX1!1.22!15.63!PITX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.22!15.47!ONECUT2;;chr1:3569072..3569093,+!p1@TP73!1.20!14.90!TP73;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.25!ONECUT2;;chr7:27196267..27196311,-!p1@HOXA7!1.17!13.84!HOXA7;;chr14:38064429..38064486,-!p1@FOXA1!1.17!13.68!FOXA1;;chr6:21593973..21593988,+!p1@SOX4!1.16!472.06!SOX4;;chr12:66218255..66218304,+!p3@HMGA2!1.16!35.82!HMGA2;;chr7:27153454..27153469,-!p2@HOXA3!1.16!13.35!HOXA3;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.66!HOXB7;;chr2:176969097..176969109,+!p3@HOXD11!1.14!12.78!HOXD11;;chr7:64838786..64838809,+!p2@ZNF92!1.13!71.07!ZNF92;;chr20:55204351..55204377,+!p1@TFAP2C!1.12!15.63!TFAP2C;;chr17:80797886..80797906,-!p1@ZNF750!1.09!11.23!ZNF750;;chr11:31832658..31832681,-!p1@PAX6!1.07!10.66!PAX6;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.29!GATA3;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.42!KDM5D;;chr7:17338266..17338282,+!p1@AHR!1.03!105.91!AHR;;chr6:20403826..20403886,+!p2@E2F3!1.03!48.92!E2F3;;chr7:17338324..17338341,+!p3@AHR!1.02!32.07!AHR;;chr1:151032922..151032951,+!p2@MLLT11!1.01!15.63!MLLT11;;chr7:27224842..27224872,-!p1@HOXA11!1.00!9.04!HOXA11;;chr6:21597600..21597664,+!p3@SOX4!0.98!14.49!SOX4;;chr11:120107344..120107351,+!p1@POU2F3!0.98!10.34!POU2F3;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.46!FOSL1;;chr6:10412392..10412409,-!p4@TFAP2A!0.97!9.69!TFAP2A;;chr6:135502408..135502459,+!p2@MYB!0.97!9.69!MYB;;chr17:70117153..70117174,+!p1@SOX9!0.96!87.02!SOX9;;chr21:38071430..38071456,+!p1@SIM2!0.96!8.22!SIM2;;chr3:181429741..181429767,+!p2@SOX2!0.95!7.81!SOX2;;chr20:42295745..42295765,+!p1@MYBL2!0.94!131.55!MYBL2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.48!HMGA2;;chr3:170076314..170076334,+!p2@SKIL!0.94!10.26!SKIL;;chr8:102504690..102504704,+!p3@GRHL2!0.94!7.73!GRHL2;;chr7:27196217..27196246,-!p2@HOXA7!0.94!7.65!HOXA7;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.82!HMGA2;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.88!ZNF385A;;chr19:12163769..12163798,-!p1@ZNF878!0.93!9.77!ZNF878;;chr1:37940170..37940190,+!p1@ZC3H12A!0.92!94.67!ZC3H12A;;chr17:46703212..46703238,-!p2@HOXB9!0.92!7.41!HOXB9;;chr17:7493405..7493419,-!p1@SOX15!0.92!7.24!SOX15;;chr2:176969124..176969155,+!p5@HOXD11!0.92!7.24!HOXD11;;chr5:174151553..174151610,+!p1@MSX2!0.91!12.05!MSX2;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.71!GATA3;;chr20:55205825..55205847,+!p2@TFAP2C!0.91!7.16!TFAP2C;;chr22:24093154..24093183,-!p2@ZNF70!0.91!7.08!ZNF70;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.54!HMGA2;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.46!BRCA1;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!11.88!TFAP2A;;chr1:247171316..247171336,-!p3@ZNF695!0.90!10.58!ZNF695;;chr6:106546808..106546833,+!p3@PRDM1!0.89!8.63!PRDM1;;chr11:129245736..129245758,+!p2@BARX2!0.89!6.84!BARX2;;chr8:102504979..102505010,+!p2@GRHL2!0.89!6.76!GRHL2;;chr19:49864746..49864780,-!p2@TEAD2!0.88!9.28!TEAD2;;chr7:148581360..148581425,-!p1@EZH2!0.87!33.62!EZH2;;chr11:34645791..34645836,+!p3@EHF!0.87!6.35!EHF;;chr17:7492684..7492778,-!p2@SOX15!0.86!13.68!SOX15;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.19!IKZF3;;chr2:46524897..46524911,+!p2@EPAS1!0.85!17.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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253a5637.CNhs10735.10418-106C4.hg38.nobarcode.bam
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 |id=FF:10418-106C4
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-|library_ids=CNhs10735
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10418
 |name=transitional-cell carcinoma cell line:5637
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10418-106C4;search_select_hide=table117:FF:10418-106C4
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FF:10418-106C4: Difference between revisions

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Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0