FF:10164-103B2: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	caudate nucleus, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12321
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	caudate nucleus
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005372

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12321		CAGE		DRX008630		DRR009502

Accession ID Hg19

Library id		BAM		CTSS
CNhs12321		DRZ000927		DRZ002312

Accession ID Hg38

Library id		BAM		CTSS
CNhs12321		DRZ012277		DRZ013662

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10035		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.319
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.998
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0494
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.628
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.429
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0918
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.2
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0494
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0938
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.205
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.0938
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0494
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.224
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.83
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0938
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0494
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0984
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0938
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0639
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0494
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.838
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.134
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.171
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00266
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0247
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0938
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.467
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0314
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.171
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0494
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0583
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.517
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0494
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0494
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.476
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.134
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.429
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.903
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0494
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.0938
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.236
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0494
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.577
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.389
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.836
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.344
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0938
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.467
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0494
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12321

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00579
MA0003.1	MA0003.1	0.277
MA0004.1	MA0004.1	0.455
MA0006.1	MA0006.1	0.281
MA0007.1	MA0007.1	0.335
MA0009.1	MA0009.1	0.2
MA0014.1	MA0014.1	0.76
MA0017.1	MA0017.1	0.00168
MA0018.2	MA0018.2	0.436
MA0019.1	MA0019.1	0.751
MA0024.1	MA0024.1	0.822
MA0025.1	MA0025.1	0.272
MA0027.1	MA0027.1	0.317
MA0028.1	MA0028.1	0.135
MA0029.1	MA0029.1	0.0108
MA0030.1	MA0030.1	0.385
MA0031.1	MA0031.1	0.981
MA0035.2	MA0035.2	0.00658
MA0038.1	MA0038.1	0.32
MA0039.2	MA0039.2	0.239
MA0040.1	MA0040.1	0.818
MA0041.1	MA0041.1	0.725
MA0042.1	MA0042.1	0.826
MA0043.1	MA0043.1	0.743
MA0046.1	MA0046.1	0.0105
MA0047.2	MA0047.2	0.0513
MA0048.1	MA0048.1	0.201
MA0050.1	MA0050.1	0.0479
MA0051.1	MA0051.1	0.132
MA0052.1	MA0052.1	0.396
MA0055.1	MA0055.1	0.00417
MA0057.1	MA0057.1	0.894
MA0058.1	MA0058.1	0.399
MA0059.1	MA0059.1	0.0809
MA0060.1	MA0060.1	0.403
MA0061.1	MA0061.1	0.00752
MA0062.2	MA0062.2	0.0157
MA0065.2	MA0065.2	4.19891e-4
MA0066.1	MA0066.1	0.0141
MA0067.1	MA0067.1	0.737
MA0068.1	MA0068.1	0.548
MA0069.1	MA0069.1	0.597
MA0070.1	MA0070.1	0.462
MA0071.1	MA0071.1	0.0235
MA0072.1	MA0072.1	0.181
MA0073.1	MA0073.1	0.315
MA0074.1	MA0074.1	0.339
MA0076.1	MA0076.1	0.287
MA0077.1	MA0077.1	0.406
MA0078.1	MA0078.1	0.548
MA0079.2	MA0079.2	0.486
MA0080.2	MA0080.2	9.42935e-9
MA0081.1	MA0081.1	0.0351
MA0083.1	MA0083.1	0.0182
MA0084.1	MA0084.1	0.961
MA0087.1	MA0087.1	0.867
MA0088.1	MA0088.1	0.204
MA0090.1	MA0090.1	0.196
MA0091.1	MA0091.1	0.247
MA0092.1	MA0092.1	0.246
MA0093.1	MA0093.1	0.471
MA0099.2	MA0099.2	7.35267e-16
MA0100.1	MA0100.1	0.816
MA0101.1	MA0101.1	0.00956
MA0102.2	MA0102.2	0.334
MA0103.1	MA0103.1	0.259
MA0104.2	MA0104.2	0.48
MA0105.1	MA0105.1	9.2473e-4
MA0106.1	MA0106.1	0.0297
MA0107.1	MA0107.1	0.00822
MA0108.2	MA0108.2	0.127
MA0111.1	MA0111.1	0.511
MA0112.2	MA0112.2	6.48209e-4
MA0113.1	MA0113.1	0.527
MA0114.1	MA0114.1	0.00254
MA0115.1	MA0115.1	0.435
MA0116.1	MA0116.1	0.00762
MA0117.1	MA0117.1	0.79
MA0119.1	MA0119.1	0.0608
MA0122.1	MA0122.1	0.916
MA0124.1	MA0124.1	0.839
MA0125.1	MA0125.1	0.285
MA0131.1	MA0131.1	0.919
MA0135.1	MA0135.1	0.0308
MA0136.1	MA0136.1	4.99455e-12
MA0137.2	MA0137.2	0.453
MA0138.2	MA0138.2	0.702
MA0139.1	MA0139.1	0.368
MA0140.1	MA0140.1	8.76382e-4
MA0141.1	MA0141.1	0.00524
MA0142.1	MA0142.1	0.896
MA0143.1	MA0143.1	0.763
MA0144.1	MA0144.1	0.465
MA0145.1	MA0145.1	0.114
MA0146.1	MA0146.1	0.0219
MA0147.1	MA0147.1	0.343
MA0148.1	MA0148.1	0.0335
MA0149.1	MA0149.1	0.0149
MA0150.1	MA0150.1	2.74942e-4
MA0152.1	MA0152.1	0.638
MA0153.1	MA0153.1	0.427
MA0154.1	MA0154.1	0.0308
MA0155.1	MA0155.1	0.642
MA0156.1	MA0156.1	2.63173e-6
MA0157.1	MA0157.1	0.367
MA0159.1	MA0159.1	0.0115
MA0160.1	MA0160.1	0.0143
MA0162.1	MA0162.1	0.113
MA0163.1	MA0163.1	1.55002e-5
MA0164.1	MA0164.1	0.698
MA0258.1	MA0258.1	0.00861
MA0259.1	MA0259.1	0.937

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12321

Novel motif	Logo	P-value
1	1	0.0391
10	10	0.0446
100	100	0.332
101	101	0.51
102	102	0.717
103	103	0.119
104	104	0.0874
105	105	0.122
106	106	0.0229
107	107	0.0755
108	108	0.767
109	109	0.00496
11	11	0.0137
110	110	0.0599
111	111	0.087
112	112	0.397
113	113	0.74
114	114	0.132
115	115	0.898
116	116	0.18
117	117	0.0131
118	118	0.185
119	119	0.124
12	12	0.924
120	120	0.161
121	121	0.269
122	122	0.831
123	123	0.823
124	124	0.332
125	125	0.281
126	126	0.0551
127	127	0.335
128	128	0.103
129	129	0.463
13	13	0.00342
130	130	0.417
131	131	0.168
132	132	0.652
133	133	0.0232
134	134	0.77
135	135	0.19
136	136	0.0165
137	137	0.606
138	138	0.925
139	139	0.152
14	14	0.795
140	140	0.348
141	141	0.339
142	142	0.55
143	143	0.0196
144	144	0.861
145	145	0.169
146	146	0.456
147	147	0.924
148	148	0.0984
149	149	0.21
15	15	0.084
150	150	0.177
151	151	0.499
152	152	0.0741
153	153	0.826
154	154	0.514
155	155	0.686
156	156	0.57
157	157	0.548
158	158	0.763
159	159	0.0493
16	16	0.064
160	160	0.197
161	161	0.331
162	162	0.943
163	163	0.901
164	164	0.041
165	165	0.0803
166	166	0.81
167	167	0.619
168	168	0.289
169	169	0.00748
17	17	0.112
18	18	0.134
19	19	0.12
2	2	0.787
20	20	0.199
21	21	0.1
22	22	0.182
23	23	0.25
24	24	0.0663
25	25	0.51
26	26	4.05408e-4
27	27	0.646
28	28	0.728
29	29	0.018
3	3	0.0569
30	30	0.869
31	31	0.776
32	32	0.0294
33	33	0.0699
34	34	0.649
35	35	0.638
36	36	0.12
37	37	0.0347
38	38	0.273
39	39	0.306
4	4	0.714
40	40	0.0295
41	41	0.318
42	42	0.278
43	43	0.112
44	44	0.231
45	45	0.646
46	46	0.0657
47	47	0.0666
48	48	0.0569
49	49	0.148
5	5	0.365
50	50	0.345
51	51	0.386
52	52	0.438
53	53	0.952
54	54	0.348
55	55	0.467
56	56	0.489
57	57	0.264
58	58	0.288
59	59	0.0723
6	6	0.907
60	60	0.0553
61	61	0.129
62	62	0.166
63	63	0.151
64	64	0.157
65	65	0.187
66	66	0.125
67	67	0.336
68	68	0.195
69	69	0.32
7	7	0.0659
70	70	0.0431
71	71	0.0118
72	72	0.4
73	73	0.0348
74	74	0.596
75	75	0.0394
76	76	0.468
77	77	0.152
78	78	0.00133
79	79	0.219
8	8	0.0761
80	80	0.651
81	81	0.562
82	82	0.428
83	83	0.0876
84	84	0.843
85	85	0.153
86	86	0.217
87	87	9.8541e-4
88	88	0.775
89	89	0.377
9	9	0.415
90	90	0.0499
91	91	0.324
92	92	0.361
93	93	0.945
94	94	0.133
95	95	0.0263
96	96	0.811
97	97	0.729
98	98	0.179
99	99	0.43

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12321

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010164 human caudate nucleus - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005372
-|accession_numbers=CAGE;DRX008630;DRR009502;DRZ000927;DRZ002312
+|HumanCAGEScanFiles=NCig10035;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008630;DRR009502;DRZ000927;DRZ002312;DRZ012277;DRZ013662
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.49!310.54!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!291.60!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.17!146.40!OLIG1;;chr3:181429704..181429722,+!p1@SOX2!2.00!99.25!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.98!94.31!SOX10;;chrX:82763292..82763317,+!p1@POU3F4!1.84!68.26!POU3F4;;chr9:114287433..114287513,+!p1@ZNF483!1.81!157.86!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.80!61.38!ARNT2;;chr17:53342311..53342400,+!p1@HLF!1.76!65.00!HLF;;chr15:80733570..80733659,+!p2@ARNT2!1.74!53.54!ARNT2;;chr14:29235961..29236008,+!p1@FOXG1!1.74!53.54!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.68!67.41!CSRNP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.46!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.62!41.00!OLIG2;;chr12:54779511..54779577,-!p5@ZNF385A!1.62!40.40!ZNF385A;;chr12:106976678..106976708,+!p2@RFX4!1.60!38.95!RFX4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.59!37.99!SMARCE1;;chr16:1031762..1031781,+!p1@SOX8!1.59!37.87!SOX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.58!50.05!BHLHE41;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.26!SOX2;;chr17:38219209..38219230,+!p1@THRA!1.57!444.28!THRA;;chr2:60781201..60781258,-!p3@BCL11A!1.56!34.97!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.55!71.03!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.73!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.37!HIF3A;;chr6:19837592..19837621,+!p1@ID4!1.49!177.28!ID4;;chr18:55102598..55102623,+!p1@ONECUT2!1.49!30.15!ONECUT2;;chr14:29234581..29234601,+!p2@FOXG1!1.46!28.10!FOXG1;;chr13:72441315..72441454,-!p1@DACH1!1.44!51.74!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.43!29.06!RORB;;chr2:2334997..2335053,-!p1@MYT1L!1.42!25.20!MYT1L;;chrX:85969626..85969664,+!p1@DACH2!1.41!24.72!DACH2;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.36!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.39!23.28!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!38.23!ZEB2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.83!NPAS3;;chr12:26277956..26277980,-!p1@BHLHE41!1.35!75.73!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.05!SOX15;;chr16:85932760..85932775,+!p1@IRF8!1.34!21.10!IRF8;;chr22:41763274..41763318,+!p3@TEF!1.34!20.74!TEF;;chr17:70117153..70117174,+!p1@SOX9!1.33!204.77!SOX9;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.84!KLF15;;chr12:106976774..106976788,+!p1@RFX4!1.32!19.78!RFX4;;chr11:47400078..47400106,-!p1@SPI1!1.32!19.66!SPI1;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.66!HIF3A;;chr2:45168875..45168916,+!p1@SIX3!1.31!19.42!SIX3;;chr8:53322304..53322340,-!p1@ST18!1.30!19.17!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!19.17!ZBED1;;chr14:29236269..29236285,+!p3@FOXG1!1.30!18.81!FOXG1;;chr2:2328299..2328363,-!p3@MYT1L!1.28!18.21!MYT1L;;chr15:31658288..31658338,+!p4@KLF13!1.28!18.21!KLF13;;chr9:126774018..126774055,+!p1@LHX2!1.28!18.21!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.28!17.85!KCNIP3;;chr3:25469724..25469773,+!p1@RARB!1.26!24.60!RARB;;chr10:64134120..64134183,+!p1@ZNF365!1.26!20.86!ZNF365;;chr7:96654133..96654150,-!p1@DLX5!1.26!17.12!DLX5;;chrX:82763265..82763283,+!p2@POU3F4!1.26!17.00!POU3F4;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr2:73520667..73520683,-!p1@EGR4!1.25!16.76!EGR4;;chr18:55102628..55102646,+!p2@ONECUT2!1.25!16.64!ONECUT2;;chr3:114173720..114173794,-!p6@ZBTB20!1.24!16.28!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.92!ZNF727;;chr4:57547751..57547764,-!p6@HOPX!1.23!15.80!HOPX;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.31!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.22!15.68!PAX6;;chr19:57352109..57352153,-!p2@ZIM2!1.21!15.20!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.19!14.59!NKX6-2;;chr2:2330039..2330072,-!p6@MYT1L!1.19!14.47!MYT1L;;chr19:38085768..38085821,+!p1@ZNF540!1.18!21.10!ZNF540;;chr6:108487289..108487302,+!p1@NR2E1!1.18!14.11!NR2E1;;chr7:150974206..150974255,-!p1@SMARCD3!1.17!84.66!SMARCD3;;chr1:61548069..61548102,+!p3@NFIA!1.17!33.41!NFIA;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.78!HEY1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.87!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.75!POU3F3;;chr14:58797974..58798011,+!p3@ARID4A!1.16!13.39!ARID4A;;chr3:114819124..114819200,-!p3@ZBTB20!1.15!30.51!ZBTB20;;chr17:38219143..38219154,+!p2@THRA!1.14!45.71!THRA;;chr17:38219184..38219195,+!p3@THRA!1.14!25.81!THRA;;chr11:8102846..8102892,+!p1@TUB!1.14!18.09!TUB;;chr19:53193731..53193767,-!p1@ZNF83!1.13!110.83!ZNF83;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.47!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.13!12.42!FOXJ1;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.30!NPAS3;;chr2:45168834..45168847,+!p2@SIX3!1.12!12.30!SIX3;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.94!SIX3;;chr16:67197654..67197716,+!p3@HSF4!1.11!11.94!HSF4;;chr3:126076264..126076305,-!p2@KLF15!1.10!16.28!KLF15;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.66!MEIS2;;chr15:61521417..61521460,-!p2@RORA!1.09!25.20!RORA;;chr8:53322347..53322378,-!p2@ST18!1.09!11.22!ST18;;chr9:3525867..3525902,-!p3@RFX3!1.08!38.35!RFX3;;chr8:30890810..30890880,-!p1@PURG!1.08!11.09!PURG;;chr10:119302232..119302265,+!p1@EMX2!1.08!10.97!EMX2;;chr14:21994337..21994442,-!p1@SALL2!1.07!29.67!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.07!23.03!ZNF395;;chr8:93074848..93074871,-!p3@RUNX1T1!1.07!10.73!RUNX1T1;;chr2:42721205..42721307,+!p4@MTA3!1.07!10.73!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.06!35.21!RERE;;chr8:22550530..22550609,-!p2@EGR3!1.05!10.25!EGR3;;chr1:2461692..2461710,-!p1@HES5!1.04!10.01!HES5;;chr3:141105235..141105307,+!p7@ZBTB38!1.04!9.89!ZBTB38;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.89!PKNOX2;;chr3:33482052..33482116,-!p2@UBP1!1.03!14.95!UBP1;;chr6:126112039..126112062,+!p8@NCOA7!1.03!11.82!NCOA7;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.65!DACH1;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.35!KLF5;;chr2:2328095..2328125,-!p7@MYT1L!1.02!9.53!MYT1L;;chr1:40105299..40105326,-!p1@HEYL!1.02!9.53!HEYL;;chr15:80696666..80696700,+!p4@ARNT2!1.02!9.53!ARNT2;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.61!HEY2;;chr8:80680024..80680046,-!p2@HEY1!1.01!10.49!HEY1;;chr10:48355030..48355090,+!p1@ZNF488!1.00!11.70!ZNF488;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.92!ZIC1;;chr19:38720294..38720348,-!p1@DPF1!0.99!11.09!DPF1;;chr14:33408072..33408114,+!p2@NPAS3!0.99!10.49!NPAS3;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.68!ZNF366;;chr5:178368186..178368238,+!p1@ZNF454!0.98!15.56!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.27!ZNF540;;chr12:24715376..24715432,-!p1@SOX5!0.98!10.97!SOX5;;chr15:37392576..37392589,-!p12@MEIS2!0.98!10.49!MEIS2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.44!ZSCAN1;;chr2:42721689..42721723,+!p6@MTA3!0.98!8.44!MTA3;;chr22:41777927..41777971,+!p1@TEF!0.97!72.00!TEF;;chr17:38256822..38256851,-!p1@NR1D1!0.97!67.17!NR1D1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.37!ZNF737;;chr20:62680984..62680999,-!p1@SOX18!0.97!11.22!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.97!8.32!ERG;;chr3:187463179..187463201,-!p2@BCL6!0.96!34.25!BCL6;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:22005197..22005261,-!p3@SALL2!0.96!8.20!SALL2;;chr16:51185318..51185348,-!p2@SALL1!0.96!8.08!SALL1;;chr7:113726357..113726443,+!p1@FOXP2!0.95!13.75!FOXP2;;chr19:49139477..49139552,-!p4@DBP!0.95!10.13!DBP;;chr18:6414884..6414942,-!p1@L3MBTL4!0.95!10.01!L3MBTL4;;chr4:57547454..57547469,-!p1@HOPX!0.95!7.96!HOPX;;chr22:41763452..41763466,+!p2@TEF!0.95!7.84!TEF;;chr7:64337960..64337986,+!p6@ZNF273!0.95!7.84!ZNF273;;chr12:24102576..24102623,-!p2@SOX5!0.95!7.84!SOX5;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.53!ZFHX4;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.49!STAT4;;chr2:113057415..113057477,+!p3@ZC3H6!0.94!10.13!ZC3H6;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.20!ZNF334;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.78!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.82!ZNF385A;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.20!POU3F1;;chr16:8963020..8963054,-!p6@CARHSP1!0.93!7.60!CARHSP1;;chr16:67197776..67197831,+!p4@HSF4!0.92!7.36!HSF4;;chr7:64337988..64338010,+!p8@ZNF273!0.92!7.36!ZNF273;;chr9:126774058..126774081,+!p3@LHX2!0.92!7.36!LHX2;;chr2:175199675..175199688,+!p1@SP9!0.92!7.36!SP9;;chr3:114173859..114173873,-!p15@ZBTB20!0.92!7.36!ZBTB20;;chr7:96634878..96634900,+!p2@DLX6!0.92!7.24!DLX6;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.25!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!0.91!7.12!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!0.91!7.12!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!0.91!7.12!ARID4A;;chr6:15401104..15401166,+!p5@JARID2!0.91!7.12!JARID2;;chr2:45169193..45169219,+!p3@SIX3!0.91!7.12!SIX3;;chr15:61521462..61521482,-!p4@RORA!0.91!7.12!RORA;;chr16:67198633..67198671,+!p1@HSF4!0.91!7.12!HSF4;;chr9:3525727..3525828,-!p2@RFX3!0.90!18.45!RFX3;;chr15:37391271..37391376,-!p5@MEIS2!0.90!13.39!MEIS2;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.61!ZNF471;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.89!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.90!8.80!ZNF793;;chr2:45168959..45168990,+!p6@SIX3!0.90!6.99!SIX3;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.87!MLXIPL;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!471.29!TSC22D1;;chr7:64023441..64023462,-!p1@ZNF680!0.89!56.56!ZNF680;;chr9:3525910..3525955,-!p4@RFX3!0.89!21.22!RFX3;;chrX:106959661..106959763,-!p4@TSC22D3!0.89!20.62!TSC22D3;;chrX:118739835..118739862,-!p1@NKRF!0.89!7.48!NKRF;;chr11:85393886..85393913,-!p3@CREBZF!0.89!6.75!CREBZF;;chr15:80696410..80696477,+!p6@ARNT2!0.89!6.75!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!0.89!6.75!NFIX;;chr7:50344289..50344323,+!p1@IKZF1!0.89!6.75!IKZF1;;chr7:96635448..96635470,+!p5@DLX6!0.89!6.75!DLX6;;chr20:3388541..3388575,-!p2@C20orf194!0.88!27.13!C20orf194;;chr16:79634624..79634642,-!p1@MAF!0.88!26.89!MAF;;chr2:60780607..60780624,-!p2@BCL11A!0.88!20.98!BCL11A;;chrX:70315688..70315709,+!p1@FOXO4!0.88!15.92!FOXO4;;chr7:64023410..64023428,-!p2@ZNF680!0.88!10.61!ZNF680;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.29!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.88!8.08!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A!0.41!2.53!PURA;;chr19:13106383..13106423,+!p8@NFIX!0.41!2.29!NFIX;;chr19:37407411..37407451,+!p3@ZNF568!0.41!2.29!ZNF568;;chr18:42260030..42260055,+!p3@SETBP1!0.41!2.17!SETBP1;;chr15:57511589..57511608,+!p4@TCF12!0.41!1.57!TCF12;;chr18:53253323..53253359,-!p19@TCF4!0.41!1.57!TCF4;;chr18:55102959..55102985,+!p6@ONECUT2!0.41!1.57!ONECUT2;;chr18:6414849..6414876,-!p2@L3MBTL4!0.41!1.57!L3MBTL4;;chr19:13213954..13214021,-!p4@LYL1!0.41!1.57!LYL1;;chr19:22193731..22193751,-!p1@ZNF208!0.41!1.57!ZNF208;;chr10:119302352..119302362,+!p9@EMX2!0.41!1.57!EMX2;;chr10:31610584..31610601,+!p19@ZEB1!0.41!1.57!ZEB1;;chr12:106976837..106976850,+!p5@RFX4!0.41!1.57!RFX4;;chr12:125003168..125003180,-!p15@NCOR2!0.41!1.57!NCOR2;;chr12:26278030..26278039,-!p7@BHLHE41!0.41!1.57!BHLHE41;;chr12:56414795..56414836,+!p4@IKZF4!0.41!1.57!IKZF4;;chr13:72440493..72440513,-!p12@DACH1!0.41!1.57!DACH1;;chr2:166428839..166428859,+!p2@CSRNP3!0.41!1.57!CSRNP3;;chr2:180726058..180726098,-!p3@ZNF385B!0.41!1.57!ZNF385B;;chr2:2328418..2328441,-!p13@MYT1L!0.41!1.57!MYT1L;;chr2:60781041..60781064,-!p13@BCL11A!0.41!1.57!BCL11A;;chr3:111314186..111314204,-!p1@ZBED2!0.41!1.57!ZBED2;;chr3:114173964..114173975,-!p36@ZBTB20!0.41!1.57!ZBTB20;;chr3:141106643..141106681,+!p16@ZBTB38!0.41!1.57!ZBTB38;;chrX:84499056..84499078,+!p3@ZNF711!0.41!1.57!ZNF711;;chrX:82763261..82763262,+!p4@POU3F4!0.41!1.57!POU3F4;;chrX:118740008..118740045,-!p3@NKRF!0.41!1.57!NKRF;;chr6:28321827..28321856,-!p5@ZNF323!0.41!1.57!ZNF323;;chr6:42419928..42419963,-!p6@TRERF1!0.41!1.57!TRERF1;;chr7:14029034..14029087,-!p5@ETV1!0.41!1.57!ETV1;;chr8:53322411..53322422,-!p6@ST18!0.41!1.57!ST18;;chr8:93115274..93115323,-!p4@RUNX1T1!0.41!1.57!RUNX1T1;;chr1:151804244..151804310,-!p1@RORC!0.41!1.57!RORC;;chr1:2159755..2159789,+!p5@SKI!0.41!1.57!SKI;;chr20:21494684..21494708,-!p1@NKX2-2!0.41!1.57!NKX2-2;;chr20:62795758..62795784,+!p4@MYT1!0.41!1.57!MYT1;;chr15:100106155..100106243,+!p1@MEF2A!0.40!60.18!MEF2A;;chr4:26322419..26322479,+!p2@RBPJ!0.40!27.13!RBPJ;;chr19:35168567..35168620,+!p1@ZNF302!0.40!25.93!ZNF302;;chr6:33168126..33168180,-!p2@RXRB!0.40!23.76!RXRB;;chr9:4300050..4300118,-!p1@GLIS3!0.40!14.47!GLIS3;;chr9:125667518..125667588,-!p1@RC3H2!0.40!14.35!RC3H2;;chr18:72922811..72922827,+!p1@TSHZ1!0.40!10.61!TSHZ1;;chr19:58258202..58258226,+!p3@ZNF776!0.40!10.37!ZNF776;;chrX:46404811..46404869,-!p1@ZNF674!0.40!7.84!ZNF674;;chr19:44809143..44809187,-!p1@ZNF235!0.40!6.27!ZNF235;;chr19:23941680..23941704,-!p1@ZNF681!0.40!6.03!ZNF681;;chr19:37862054..37862110,+!p1@ZNF527!0.40!5.67!ZNF527;;chr19:52552051..52552113,-!p1@ZNF432!0.40!4.10!ZNF432;;chr12:104531823..104531849,-!p5@NFYB!0.40!4.10!NFYB;;chr3:52001396..52001425,-!p4@PCBP4!0.40!3.38!PCBP4;;chr19:37407172..37407217,-!p2@ZNF829!0.40!3.38!ZNF829;;chr17:38465413..38465438,+!p5@RARA!0.40!2.89!RARA;;chr19:13134772..13134822,+!p2@NFIX!0.40!2.65!NFIX;;chr19:35417844..35417877,+!p2@ZNF30!0.40!2.65!ZNF30;;chr6:91006575..91006602,-!p2@BACH2!0.40!2.65!BACH2;;chr13:46549840..46549882,-!p4@ZC3H13!0.40!2.53!ZC3H13;;chr5:124082279..124082319,-!p3@ZNF608!0.40!2.05!ZNF608;;chr18:53255839..53255854,-!p13@TCF4!0.40!1.93!TCF4;;chr13:73636516..73636532,+!p3@KLF5!0.40!1.81!KLF5;;chr19:53606636..53606692,-!p1@ZNF160!0.39!40.52!ZNF160;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.39!23.52!ZBTB41;;chr19:53400852..53400962,-!p1@ZNF320!0.39!21.59!ZNF320;;chr17:36861496..36861586,+!p1@MLLT6!0.39!20.98!MLLT6;;chr10:38383255..38383324,+!p1@ZNF37A!0.39!20.62!ZNF37A;;chr19:37157713..37157760,-!p1@ZNF461!0.39!12.18!ZNF461;;chr17:16557128..16557174,-!p1@ZNF624!0.39!9.65!ZNF624;;chr19:58962974..58963001,+!p1@ZNF324B!0.39!9.29!ZNF324B;;chr1:14075865..14075896,+!p3@PRDM2!0.39!8.80!PRDM2;;chr19:12721616..12721640,-!p2@ZNF490!0.39!6.99!ZNF490;;chr19:23870007..23870022,-!p2@ZNF675!0.39!6.63!ZNF675;;chr3:71007886..71007887,-!p8@FOXP1!0.39!6.51!FOXP1;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001873;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010122,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10164-103B2
 |is_a=EFO:0002091;;FF:0000002;;FF:0010164
 |is_obsolete=
 |library_id=CNhs12321
-|library_id_phase_based=1:CNhs12321
+|library_id_phase_based=2:CNhs12321
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10164
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10164
 |name=caudate nucleus, adult, donor10252
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=NCig10035,,,
 |profile_hcage=CNhs12321,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 102: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10164-103B2;search_select_hide=table117:FF:10164-103B2
 }}

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FF:10164-103B2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0